HHsearch alignment for GI: 254780680 and conserved domain: cd00778
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.89 E-value=1.3e-22 Score=188.82 Aligned_cols=241 Identities=22% Similarity=0.243 Sum_probs=209.6
Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCHHHHHHHHH
Q ss_conf 202211731000112221675301056488999999999998622320320212356202788986-5514224767764
Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIPKFADDMFC 221 (430)
Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp~f~~~~y~ 221 (430)
T Consensus 8 ~~~~~~~l~d~-~--pv~--G~~~~lP~G~~i~~~l~~~~r~~-~~~~G~~ev~~P~l~~~~~~~k~sgh~~~y~~emf~ 81 (261)
T cd00778 8 EVITKAELIDY-G--PVK--GCMVFRPYGYAIWENIQKILDKE-IKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAW 81 (261)
T ss_pred HHHHHHCCCCC-C--CCC--CEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCEE
T ss_conf 99998177224-7--998--30888632899999999999999-998699699883327889999742814305765335
Q ss_pred HH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEE-ECCCC
Q ss_conf 31--------0002313454114544534205955504208853221078843355434321222210200212-12786
Q gi|254780680|r 222 TT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV-SITRE 292 (430)
Q Consensus 222 ~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~-~~~~p 292 (430)
T Consensus 82 v~~~g~~~~d~~y~LkPmne~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s--~--~~gL~RvReF~~dDahs~~~t~ 157 (261)
T cd00778 82 VTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK--T--TRPFLRTREFLWQEGHTAHATE 157 (261)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCC--C--CCCCCEEEEEEEECCCCCCCCH
T ss_conf 52168520135603478886999999973505402278255530422437788--8--8765325425234233655899
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECC
Q ss_conf 50145789899999999998-41067530378011784434024101101004833237531021007645326847338
Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKR-LDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDP 371 (430)
Q Consensus 293 e~S~~~~e~~~~~~~~i~~~-L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~ 371 (430)
T Consensus 158 eq~~~e~~~~~~~y~~i~~~l~~~~~~~~~~~~~dk~~Ga~y~~~id~~~~d-gr~~q~gti~~l~~~~s~~f~l~y~~~ 236 (261)
T cd00778 158 EEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMPD-GRALQSGTSHNLGQNFSKAFDIKYQDK 236 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHCCCCCCCCCEEEEEECCC-CCEEEEEHHHHCCCCHHHHCCCEEECC
T ss_conf 9999999999999999999847815786056521116785100014787478-870467510202765356379899999
Q ss_pred CCCCCCEEEE-ECCCHHHHHHHHHHHHH
Q ss_conf 9984101042-00432289999999988
Q gi|254780680|r 372 NSKSLKFTHT-LNGSGVAVGRCLIAILE 398 (430)
Q Consensus 372 ~~~~~~~~ht-lNgt~~A~~R~l~ailE 398 (430)
T Consensus 237 dg~~-~~phr~~~G~~---eR~ig~lI~ 260 (261)
T cd00778 237 DGQK-EYVHQTSWGIS---TRLIGAIIM 260 (261)
T ss_pred CCCC-CCCEEEEEEHH---HHHHHHHHC
T ss_conf 9998-08557412499---899889734