HHsearch alignment for GI: 254780680 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=100.00 E-value=9.6e-38 Score=301.20 Aligned_cols=166 Identities=40% Similarity=0.618 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf 99999999998622320320212356202788986551422476776431----00023134541145445342059555
Q gi|254780680|r 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTNLYSHEIIESKS 249 (430)
Q Consensus 174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430)
T Consensus 1 l~~~l~~~~~~~~-~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~ 79 (170)
T pfam00587 1 LRNALENFIRDLF-KRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEILSYRD 79 (170)
T ss_pred CHHHHHHHHHHHH-HHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 9799999999999-985998999991756789834477655753125673589976887325745888998862003235
Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC
Q ss_conf 04208853221078843355434321222210200212127865014578989999999999841067530378011784
Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF 329 (430)
Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~ 329 (430)
T Consensus 80 lP~r~~~~~~~fR~E~~----~~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~lgl~~~i~~~~~g~l~~ 155 (170)
T pfam00587 80 LPLKLYQIGPCFRYEAR----PRRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDLGLPYRVVLNTRGDLGG 155 (170)
T ss_pred CCCEEECCCCCCCCCCC----CCCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 86013306530067777----66677436788980479996700429999999999999999879967999726777898
Q ss_pred HHHEEEEEEEECCCC
Q ss_conf 434024101101004
Q gi|254780680|r 330 SACKTYDLEVWLAGQ 344 (430)
Q Consensus 330 ~a~~~~DiE~w~P~~ 344 (430)
T Consensus 156 ~~~~~~d~E~w~~~~ 170 (170)
T pfam00587 156 YASKTGDLEAWLPAE 170 (170)
T ss_pred HHHHCCCCCEECCCC
T ss_conf 678607852057889