HHsearch results for GI: 254780680 and protein with PDBid: 1qf6_A

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.91  E-value=1.5e-23  Score=194.09  Aligned_cols=264  Identities=19%  Similarity=0.259  Sum_probs=215.0

Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      -+||-.||+.++|+.|..-    |+|+|++.-.|.++-+.|.+++-+. ..+.||.+|.+|.+.+.+...-+|++..+.+
T Consensus       241 ~rdhr~lg~~~~lf~~~~~----~~G~~~~lP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~eLw~~sg~~d~~~e  315 (642)
T 1qf6_A          241 KRDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD  315 (642)
T ss_dssp             TTCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEETHHHHHHSHHHHHGG
T ss_pred             HHHHHHHHHHHHHHEECCC----CCCEEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCC
T ss_conf             6407889987578603367----8825887720999999999999999-9976989986254676567754762222233


Q ss_pred             HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             776431---00023134541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r  218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED  294 (430)
Q Consensus       218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~  294 (430)
                      .+|...   ++++|-||.|.+.+.+|++.+..+.+||+|+.-+++|||-|.-  | ...||.|+-+|..-+..+||++++
T Consensus       316 ~m~~~~~~~~~~~L~P~~e~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~--~-~~~Gl~R~ReF~q~Da~~f~~~~~  392 (642)
T 1qf6_A          316 AMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ  392 (642)
T ss_dssp             GCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG--G-GCBTTTBCSEEEEEEEEEEECGGG
T ss_pred             CEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC--C-CCCCCCCCCCCEECCEEEEECCHH
T ss_conf             0787622564256547886179999985012324478589997233368867--5-654532011202545479955624


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-------------------------------HHEEEEEEEECCC
Q ss_conf             145789899999999998410675303780117844-------------------------------3402410110100
Q gi|254780680|r  295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-------------------------------ACKTYDLEVWLAG  343 (430)
Q Consensus       295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-------------------------------a~~~~DiE~w~P~  343 (430)
                      +.++..+++....++|+.||+++-.|.++++..+..                               +.....||+.++-
T Consensus       393 ~~~e~~~~~~~~~~i~~~~Gl~~~~v~lst~~e~~~gs~e~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~gpkid~~~~d  472 (642)
T 1qf6_A          393 IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYD  472 (642)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECC
T ss_conf             59999999999999999819955899952587666787889999889999999966997124146544468760368604


Q ss_pred             -CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf             -48332375310210076453268473389984101042004322-89999999988346899838658222310
Q gi|254780680|r  344 -QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY  416 (430)
Q Consensus       344 -~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py  416 (430)
                       .++..+++-+- ...-.+.|.++.|.+.+|.+ +.+.++..+.. .+.|++++++|++    | .+.|..|-||
T Consensus       473 ~~gr~~~~~tiq-ld~~~~~~~~~~y~~~~g~~-~~~~~i~~~~~G~ieR~ia~liE~~----g-~~~P~~lAP~  540 (642)
T 1qf6_A          473 CLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEF----A-GFFPTWLAPV  540 (642)
T ss_dssp             TTCCEEEEEEEE-EESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHH----T-TCCCTTTCSS
T ss_pred             CCCCCEEEEEEE-EECCCCCCCCCEEECCCCCC-CCCEEEEECCCCHHHHHHHHHHHHC----C-CCCCCCCCCC
T ss_conf             667402652698-65355531320134554453-0355774166418999999999861----8-9589875873