HHsearch results for GI: 254780680 and protein with PDBid: 1qf6_A
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.91 E-value=1.5e-23 Score=194.09 Aligned_cols=264 Identities=19% Similarity=0.259 Sum_probs=215.0
Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430)
Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430)
-+||-.||+.++|+.|..- |+|+|++.-.|.++-+.|.+++-+. ..+.||.+|.+|.+.+.+...-+|++..+.+
T Consensus 241 ~rdhr~lg~~~~lf~~~~~----~~G~~~~lP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~eLw~~sg~~d~~~e 315 (642)
T 1qf6_A 241 KRDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315 (642)
T ss_dssp TTCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEETHHHHHHSHHHHHGG
T ss_pred HHHHHHHHHHHHHHEECCC----CCCEEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCC
T ss_conf 6407889987578603367----8825887720999999999999999-9976989986254676567754762222233
Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430)
Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430)
.+|... ++++|-||.|.+.+.+|++.+..+.+||+|+.-+++|||-|.- | ...||.|+-+|..-+..+||++++
T Consensus 316 ~m~~~~~~~~~~~L~P~~e~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~--~-~~~Gl~R~ReF~q~Da~~f~~~~~ 392 (642)
T 1qf6_A 316 AMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ 392 (642)
T ss_dssp GCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG--G-GCBTTTBCSEEEEEEEEEEECGGG
T ss_pred CEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC--C-CCCCCCCCCCCEECCEEEEECCHH
T ss_conf 0787622564256547886179999985012324478589997233368867--5-654532011202545479955624
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-------------------------------HHEEEEEEEECCC
Q ss_conf 145789899999999998410675303780117844-------------------------------3402410110100
Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-------------------------------ACKTYDLEVWLAG 343 (430)
Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-------------------------------a~~~~DiE~w~P~ 343 (430)
+.++..+++....++|+.||+++-.|.++++..+.. +.....||+.++-
T Consensus 393 ~~~e~~~~~~~~~~i~~~~Gl~~~~v~lst~~e~~~gs~e~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~gpkid~~~~d 472 (642)
T 1qf6_A 393 IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYD 472 (642)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECC
T ss_conf 59999999999999999819955899952587666787889999889999999966997124146544468760368604
Q ss_pred -CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf -48332375310210076453268473389984101042004322-89999999988346899838658222310
Q gi|254780680|r 344 -QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY 416 (430)
Q Consensus 344 -~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py 416 (430)
.++..+++-+- ...-.+.|.++.|.+.+|.+ +.+.++..+.. .+.|++++++|++ | .+.|..|-||
T Consensus 473 ~~gr~~~~~tiq-ld~~~~~~~~~~y~~~~g~~-~~~~~i~~~~~G~ieR~ia~liE~~----g-~~~P~~lAP~ 540 (642)
T 1qf6_A 473 CLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEF----A-GFFPTWLAPV 540 (642)
T ss_dssp TTCCEEEEEEEE-EESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHH----T-TCCCTTTCSS
T ss_pred CCCCCEEEEEEE-EECCCCCCCCCEEECCCCCC-CCCEEEEECCCCHHHHHHHHHHHHC----C-CCCCCCCCCC
T ss_conf 667402652698-65355531320134554453-0355774166418999999999861----8-9589875873