HHsearch results for GI: 254780680 and protein with PDBid: 2cja_A
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=0 Score=433.06 Aligned_cols=300 Identities=17% Similarity=0.171 Sum_probs=258.3
Q ss_pred HHCCCCCCCHHHHC----CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHH
Q ss_conf 10022588112211----35554024200015656656662112202211731000112221675301056488999999
Q gi|254780680|r 103 SCIPNVPLEEVPIG----TSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 (430)
Q Consensus 103 l~IPNi~~~~VP~G----~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~AL 178 (430)
-++.|++..++|.. ++|..+ ++... .++.+.|. .+|.+++++++++. +.+|+|++++.+.||+|.|||
T Consensus 166 ~ri~~l~~~~~~~~~~~~~~e~~~-~~~e~-~~r~~~~~-~d~~~~~~~~g~i~-----~~~~~G~~~~~p~g~~L~raL 237 (522)
T 2cja_A 166 DRILTLLEEKIEAAQYGAKAEHWN-LLWQR-EPMEHPFK-EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTF 237 (522)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCC-EEEEC-CCCCCCCC-SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHCCCCCHHHHH-HHHHC-CCCCCCCC-CCHHHHHHHCCCCH-----HCCCCCEEEECCHHHHHHHHH
T ss_conf 998753023055523555166777-76431-22233112-78899998647600-----147686389866799999999
Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH----------------------------------HH
Q ss_conf 99999862232032021235620278898655142247677643----------------------------------10
Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT----------------------------------TD 224 (430)
Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~----------------------------------~d 224 (430)
.+|++|.+..+.||++|.+|.|++.+++++|||+|.|.++||.+ ++
T Consensus 238 e~~~~e~~~~k~G~~ev~~P~li~~el~~~sGh~~~f~~~m~~V~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~ 317 (522)
T 2cja_A 238 EKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEP 317 (522)
T ss_dssp HHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCC
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999998886398798788633799995478856674643563256655410111221110012334321110114566
Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 00231345411454453420595550420885322-10788433554343212222102002121278650145789899
Q gi|254780680|r 225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAP-SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 (430)
Q Consensus 225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~-cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~ 303 (430)
+++|.||+|+|++++|+++++++.+||+||+++|+ |||.|+|+ ++||+|||||+|+|++.+|+||++.+++++|+
T Consensus 318 ~y~L~Pt~c~~~~~~~~~~~~s~~dLPlk~~~~s~~~fR~E~g~----~~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l 393 (522)
T 2cja_A 318 IGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG----IHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522)
T ss_dssp CEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSS----CCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCC----CCCCCEEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_conf 56660577199999971863570002488874040268745778----77550246778643999956888999999999
Q ss_pred HHHHHHHH-HHCCHHHHCCCC---------CHHCCCHHHEEEEEEEECCCC---CCEEEEEEECCCCCHHHHHCCCEEEC
Q ss_conf 99999999-841067530378---------011784434024101101004---83323753102100764532684733
Q gi|254780680|r 304 SCAEEILK-RLDLHYRVVSLC---------TGDLGFSACKTYDLEVWLAGQ---NLYREISSCSTCGNFQSRRMNSRYRD 370 (430)
Q Consensus 304 ~~~~~i~~-~L~lpyRvv~~~---------sgdlg~~a~~~~DiE~w~P~~---~~y~Ev~S~Snc~D~QsrRl~iry~~ 370 (430)
+.+.++|. .|+||||++..+ .+++++++..+||+|+|+|++ ++|.||+||++|+||||+|++|+.
T Consensus 394 ~~~~~if~~~L~L~~r~v~~~~~~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~-- 471 (522)
T 2cja_A 394 DRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL-- 471 (522)
T ss_dssp HHHHHHHHHTSCCCEEEEEC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEE--
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC--
T ss_conf 999999999709845993256544566555112335621240238854256778871899866264342637309738--
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEE
Q ss_conf 8998410104200432289999999988346899838658222310188013
Q gi|254780680|r 371 PNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAV 422 (430)
Q Consensus 371 ~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~ 422 (430)
.+ .+++|| +++|+++.|+++|+||+|+...+ ..|+++|+|+|+...
T Consensus 472 ~~---~~~v~~-~c~GiGleR~i~alle~~g~d~~--~WP~~i~~~vg~~~~ 517 (522)
T 2cja_A 472 QS---GDELWS-GCSGVGLERWAAVFLAQKGLDPA--NWPEEFRNRVGEMPK 517 (522)
T ss_dssp TT---CCCEEE-EEEEEEHHHHHHHHHHHHCSCGG--GSCHHHHHHHCSCCC
T ss_pred CC---CCEEEE-ECCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCC
T ss_conf 99---998999-37672999999999996599999--988699998648561