HHsearch results for GI: 254780680 and protein with PDBid: 2dq0_A
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=0 Score=1246.04 Aligned_cols=424 Identities=38% Similarity=0.636 Sum_probs=412.1
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98844785199999999984698958---899999999999999999999999999999999986449987999999999
Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ---SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET 77 (430)
Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~---id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~ 77 (430)
|||||+||+||+.|++++++||.+.+ +|+++++|++||+++.++++||++||++||+||++++++++ ++++++++
T Consensus 1 MLDik~iRenpe~v~~~l~~R~~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~--~~~l~~~~ 78 (455)
T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKS 78 (455)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHH
T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf 9897887769999999998649963155799999999999999999999999999999999999867997--89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------------------CCC
Q ss_conf 999988644466666778887744310022588112211355540242000156566--------------------566
Q gi|254780680|r 78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSA--------------------IHL 137 (430)
Q Consensus 78 ~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f--------------------~f~ 137 (430)
++|+++|+.+++++++++++++++++.|||+||++||+|.||+||++|++||++|.| +|+
T Consensus 79 ~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f~~~~~~~~~~~~~~~~~~~~~f~ 158 (455)
T 2dq0_A 79 REIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWK 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999999999997276777866687888666646785057556555532111234555565667887
Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430)
Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430)
|++|||||+.+|++||++|+|+||||||||+|+||+|||||+|||||++ .++||++|+||+|||+++|+||||+|+|++
T Consensus 159 ~k~H~el~e~l~liDfe~~akvsGsrf~~Lkg~~A~Le~ALi~f~ld~~-~~~Gy~~v~pP~iV~~~~~~gtGqlp~f~~ 237 (455)
T 2dq0_A 159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFED 237 (455)
T ss_dssp CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHH
T ss_pred CCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHCCCCCCCHH
T ss_conf 6769999877187314333212578647835808899999999999750-001654623861102788734268987601
Q ss_pred HHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH
Q ss_conf 776431-0002313454114544534205955504208853221078843355434321222210200212127865014
Q gi|254780680|r 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 (430)
Q Consensus 218 ~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~ 296 (430)
|+|+++ +|+||||||||||+|||+|++|+.++||+||+|+|||||+||||||||||||||||||+|||||+||+||+|+
T Consensus 238 ~~Y~i~~~dl~Li~TaEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~ 317 (455)
T 2dq0_A 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW 317 (455)
T ss_dssp TCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH
T ss_pred CEEEECCCCEEECCCCCCCHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCH
T ss_conf 04785599757436443204444401325787789202465897886555578764012201221426899834897319
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCC
Q ss_conf 57898999999999984106753037801178443402410110100483323753102100764532684733899841
Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSL 376 (430)
Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~ 376 (430)
++|++|+.++++||++||||||||+|||||||++|+||||||||||||++|+||||||||||||||||||||+++.++++
T Consensus 318 ~~~e~~~~~~~~i~~~L~lpyrvv~~~s~dlg~~a~~k~DiE~w~P~~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~ 397 (455)
T 2dq0_A 318 EWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKP 397 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCCC
T ss_conf 99999999999999975996589881376678771218999988557786245746615435766133445126899963
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf 010420043228999999998834689983865822231018801307334
Q gi|254780680|r 377 KFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430)
Q Consensus 377 ~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430)
+||||||||||||||+|+||||||||+||+|+||+||||||||.++|++..
T Consensus 398 ~~~HtlNgt~lav~R~l~ailEn~q~~dg~i~iP~~L~pymg~~~~~~~~~ 448 (455)
T 2dq0_A 398 RYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEK 448 (455)
T ss_dssp EECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHSCSEECCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEEECCCC
T ss_conf 554533064018878999999847389986868854463459958841552