HHsearch results for GI: 254780680 and protein with PDBid: 2dq0_A

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00  E-value=0  Score=1246.04  Aligned_cols=424  Identities=38%  Similarity=0.636  Sum_probs=412.1

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             98844785199999999984698958---899999999999999999999999999999999986449987999999999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQ---SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET   77 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~---id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~   77 (430)
                      |||||+||+||+.|++++++||.+.+   +|+++++|++||+++.++++||++||++||+||++++++++  ++++++++
T Consensus         1 MLDik~iRenpe~v~~~l~~R~~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~--~~~l~~~~   78 (455)
T 2dq0_A            1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKS   78 (455)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf             9897887769999999998649963155799999999999999999999999999999999999867997--89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------------------CCC
Q ss_conf             999988644466666778887744310022588112211355540242000156566--------------------566
Q gi|254780680|r   78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSA--------------------IHL  137 (430)
Q Consensus        78 ~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f--------------------~f~  137 (430)
                      ++|+++|+.+++++++++++++++++.|||+||++||+|.||+||++|++||++|.|                    +|+
T Consensus        79 ~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f~~~~~~~~~~~~~~~~~~~~~f~  158 (455)
T 2dq0_A           79 REIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWK  158 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999999999999997276777866687888666646785057556555532111234555565667887


Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      |++|||||+.+|++||++|+|+||||||||+|+||+|||||+|||||++ .++||++|+||+|||+++|+||||+|+|++
T Consensus       159 ~k~H~el~e~l~liDfe~~akvsGsrf~~Lkg~~A~Le~ALi~f~ld~~-~~~Gy~~v~pP~iV~~~~~~gtGqlp~f~~  237 (455)
T 2dq0_A          159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFED  237 (455)
T ss_dssp             CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHH
T ss_pred             CCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHCCCCCCCHH
T ss_conf             6769999877187314333212578647835808899999999999750-001654623861102788734268987601


Q ss_pred             HHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH
Q ss_conf             776431-0002313454114544534205955504208853221078843355434321222210200212127865014
Q gi|254780680|r  218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF  296 (430)
Q Consensus       218 ~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~  296 (430)
                      |+|+++ +|+||||||||||+|||+|++|+.++||+||+|+|||||+||||||||||||||||||+|||||+||+||+|+
T Consensus       238 ~~Y~i~~~dl~Li~TaEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~  317 (455)
T 2dq0_A          238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW  317 (455)
T ss_dssp             TCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH
T ss_pred             CEEEECCCCEEECCCCCCCHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCH
T ss_conf             04785599757436443204444401325787789202465897886555578764012201221426899834897319


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCC
Q ss_conf             57898999999999984106753037801178443402410110100483323753102100764532684733899841
Q gi|254780680|r  297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSL  376 (430)
Q Consensus       297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~  376 (430)
                      ++|++|+.++++||++||||||||+|||||||++|+||||||||||||++|+||||||||||||||||||||+++.++++
T Consensus       318 ~~~e~~~~~~~~i~~~L~lpyrvv~~~s~dlg~~a~~k~DiE~w~P~~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~  397 (455)
T 2dq0_A          318 EWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKP  397 (455)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCCC
T ss_conf             99999999999999975996589881376678771218999988557786245746615435766133445126899963


Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf             010420043228999999998834689983865822231018801307334
Q gi|254780680|r  377 KFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH  427 (430)
Q Consensus       377 ~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~  427 (430)
                      +||||||||||||||+|+||||||||+||+|+||+||||||||.++|++..
T Consensus       398 ~~~HtlNgt~lav~R~l~ailEn~q~~dg~i~iP~~L~pymg~~~~~~~~~  448 (455)
T 2dq0_A          398 RYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEK  448 (455)
T ss_dssp             EECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHSCSEECCCC-
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEEECCCC
T ss_conf             554533064018878999999847389986868854463459958841552