HHsearch results for GI: 254780680 and protein with PDBid: 2dq3_A
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=1175.29 Aligned_cols=422 Identities=49% Similarity=0.825 Sum_probs=410.7
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 98844785199999999984698958--8999999999999999999999999999999999864499879999999999
Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ--SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETS 78 (430)
Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~--id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~ 78 (430)
|||||+||+||+.|++++++||.+++ +|+|++||++||+++.++|+||++||.+||+||++++++++ +++++++++
T Consensus 1 MlDik~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~--~~~l~~~~~ 78 (425)
T 2dq3_A 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVK 78 (425)
T ss_dssp CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHH
T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_conf 989788876999999999870998255599999999999999999999999999999999999867988--999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHH
Q ss_conf 99988644466666778887744310022588112211355540242000156566566621122022117310001122
Q gi|254780680|r 79 TLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATK 158 (430)
Q Consensus 79 ~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~k 158 (430)
+|+++++.+++++++++++++++++.|||+||++||+|.+|++|++|++||++|.|+|+||||+|||+.+|++||++|+|
T Consensus 79 ~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~~g~~~~~~f~~k~H~eig~~l~l~Df~~~~k 158 (425)
T 2dq3_A 79 ELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAK 158 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHC
T ss_conf 99999999999999999999999972789878888999872256788337888999989884999998739840566642
Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHH
Q ss_conf 2167530105648899999999999862232032021235620278898655142247677643-100023134541145
Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLT 237 (430)
Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~ 237 (430)
+||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|++ ++++||||||||||+
T Consensus 159 vsGsrf~~l~g~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~ 237 (425)
T 2dq3_A 159 LSGSRFTVIAGWGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT 237 (425)
T ss_dssp HHCSSCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHH
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHH
T ss_conf 36776268628599999999999999998-77987743837668999864156742456530126886164144565088
Q ss_pred HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 44534205955504208853221078843355434321222210200212127865014578989999999999841067
Q gi|254780680|r 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317 (430)
Q Consensus 238 ~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430)
|||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||+||+|++|+++|++|+.++++||++|||||
T Consensus 238 ~~~~~~~~~~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L~l~~ 317 (425)
T 2dq3_A 238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPY 317 (425)
T ss_dssp GGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHCCEEECHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77335074175488403453787786655457677751543210023246641733589999999999999999716870
Q ss_pred HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 53037801178443402410110100483323753102100764532684733899841010420043228999999998
Q gi|254780680|r 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 (430)
Q Consensus 318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail 397 (430)
|||+|||||||++|+|||||||||||+++|+||||||||||||||||||||++.++++.+||||||||||||||+|+|||
T Consensus 318 rvv~~~~~dlg~~~~~~~DiE~W~P~~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l~ail 397 (425)
T 2dq3_A 318 RVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL 397 (425)
T ss_dssp EEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCEEECEEEEECCCCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 89996788888764257340777230084788988755255666546887665899951556774776208878999999
Q ss_pred HHCCCCCCCEECCCCCCCCCCCEEEECCC
Q ss_conf 83468998386582223101880130733
Q gi|254780680|r 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 (430)
Q Consensus 398 En~q~~dg~i~iP~~L~pym~g~~~i~~~ 426 (430)
|||||+||+|+||+|||||| |.++|.|+
T Consensus 398 En~q~~dg~v~iP~~L~~y~-g~~~i~p~ 425 (425)
T 2dq3_A 398 ENYQQEDGSVVVPEVLRDYV-GTDVIRPE 425 (425)
T ss_dssp HHTBCTTSCEECCTTTHHHH-SCSEECCC
T ss_pred HHCCCCCCCEECCHHHHHHC-CCCCCCCC
T ss_conf 73518998686882214035-99701679