HHsearch results for GI: 254780680 and protein with PDBid: 2dq3_A

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=100.00  E-value=0  Score=1175.29  Aligned_cols=422  Identities=49%  Similarity=0.825  Sum_probs=410.7

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             98844785199999999984698958--8999999999999999999999999999999999864499879999999999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQ--SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETS   78 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~--id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~   78 (430)
                      |||||+||+||+.|++++++||.+++  +|+|++||++||+++.++|+||++||.+||+||++++++++  +++++++++
T Consensus         1 MlDik~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~--~~~l~~~~~   78 (425)
T 2dq3_A            1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVK   78 (425)
T ss_dssp             CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_conf             989788876999999999870998255599999999999999999999999999999999999867988--999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHH
Q ss_conf             99988644466666778887744310022588112211355540242000156566566621122022117310001122
Q gi|254780680|r   79 TLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATK  158 (430)
Q Consensus        79 ~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~k  158 (430)
                      +|+++++.+++++++++++++++++.|||+||++||+|.+|++|++|++||++|.|+|+||||+|||+.+|++||++|+|
T Consensus        79 ~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~~g~~~~~~f~~k~H~eig~~l~l~Df~~~~k  158 (425)
T 2dq3_A           79 ELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAK  158 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHC
T ss_conf             99999999999999999999999972789878888999872256788337888999989884999998739840566642


Q ss_pred             HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHH
Q ss_conf             2167530105648899999999999862232032021235620278898655142247677643-100023134541145
Q gi|254780680|r  159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLT  237 (430)
Q Consensus       159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~  237 (430)
                      +||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|++ ++++||||||||||+
T Consensus       159 vsGsrf~~l~g~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~  237 (425)
T 2dq3_A          159 LSGSRFTVIAGWGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT  237 (425)
T ss_dssp             HHCSSCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHH
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHH
T ss_conf             36776268628599999999999999998-77987743837668999864156742456530126886164144565088


Q ss_pred             HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             44534205955504208853221078843355434321222210200212127865014578989999999999841067
Q gi|254780680|r  238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       238 ~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      |||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||+||+|++|+++|++|+.++++||++|||||
T Consensus       238 ~~~~~~~~~~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L~l~~  317 (425)
T 2dq3_A          238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPY  317 (425)
T ss_dssp             GGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHCCEEECHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77335074175488403453787786655457677751543210023246641733589999999999999999716870


Q ss_pred             HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             53037801178443402410110100483323753102100764532684733899841010420043228999999998
Q gi|254780680|r  318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL  397 (430)
Q Consensus       318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail  397 (430)
                      |||+|||||||++|+|||||||||||+++|+||||||||||||||||||||++.++++.+||||||||||||||+|+|||
T Consensus       318 rvv~~~~~dlg~~~~~~~DiE~W~P~~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l~ail  397 (425)
T 2dq3_A          318 RVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL  397 (425)
T ss_dssp             EEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEECEEEEECCCCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf             89996788888764257340777230084788988755255666546887665899951556774776208878999999


Q ss_pred             HHCCCCCCCEECCCCCCCCCCCEEEECCC
Q ss_conf             83468998386582223101880130733
Q gi|254780680|r  398 ENYLNADGSVTIPTVLRPYMNNLAVIKKE  426 (430)
Q Consensus       398 En~q~~dg~i~iP~~L~pym~g~~~i~~~  426 (430)
                      |||||+||+|+||+|||||| |.++|.|+
T Consensus       398 En~q~~dg~v~iP~~L~~y~-g~~~i~p~  425 (425)
T 2dq3_A          398 ENYQQEDGSVVVPEVLRDYV-GTDVIRPE  425 (425)
T ss_dssp             HHTBCTTSCEECCTTTHHHH-SCSEECCC
T ss_pred             HHCCCCCCCEECCHHHHHHC-CCCCCCCC
T ss_conf             73518998686882214035-99701679