HHsearch results for GI: 254780680 and protein with PDBid: 2zt5_A

>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.18  E-value=3.1e-10  Score=95.23  Aligned_cols=265  Identities=15%  Similarity=0.206  Sum_probs=171.6

Q ss_pred             CHHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH
Q ss_conf             2022117310001122216--75301056488999999999998622320320212356202788986551422476776
Q gi|254780680|r  143 EIGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF  220 (430)
Q Consensus       143 elge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y  220 (430)
                      +|.+.-+.+..  +..|=|  ||+|-+---|.++-+-+.+..-...+.+-|..+|..|.|...+++..+|++.+|.|-+.
T Consensus        72 ~~~~rr~f~~~--s~~iygg~aG~YdygPlG~~v~~kI~~iwR~emv~~~g~~Ei~~p~l~P~evwkaSGh~~~f~D~~v  149 (693)
T 2zt5_A           72 DTLKRRFFYDQ--AFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV  149 (693)
T ss_dssp             HHHHHTTSEEE--TTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE
T ss_pred             HHHHHCCCCCC--CCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCHH
T ss_conf             99874446245--5012153665305335489999999999999985405978953132589899973698522443046


Q ss_pred             ---------H----HHHCCEECC---------------------------------------------------------
Q ss_conf             ---------4----310002313---------------------------------------------------------
Q gi|254780680|r  221 ---------C----TTDGRWLIP---------------------------------------------------------  230 (430)
Q Consensus       221 ---------~----~~d~l~Li~---------------------------------------------------------  230 (430)
                               .    .++.+-.++                                                         
T Consensus       150 ~~~~~~~r~RaD~ll~~~~e~~~t~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ir~p~~g~~~g~~R~refmmk  229 (693)
T 2zt5_A          150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK  229 (693)
T ss_dssp             EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE
T ss_pred             HHCCCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             65534533314321167887750205666888888898986342014789999999718989887886554534112554


Q ss_pred             ----------------CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             ----------------4541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r  231 ----------------TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED  294 (430)
Q Consensus       231 ----------------TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~  294 (430)
                                      |+.--..||-+=-.....+||.-.+-.+..||.|.-.    -.||+|+..|+-.|+..|+.|++
T Consensus       230 d~~g~~~~~~~~lrpetaq~~f~ay~ri~~~~g~klpf~~AqiG~~frnEi~p----r~gl~R~rEf~~~e~e~F~~p~~  305 (693)
T 2zt5_A          230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP----RSGLIRVREFTMAEIEHFVDPSE  305 (693)
T ss_dssp             EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC----CSGGGSCSEEEEEEEEEEECTTC
T ss_pred             ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CEEEECCCCCEEEEEEECCCHHH
T ss_conf             13466641243135468999999999999970888865998536665776666----53342258765888862357214


Q ss_pred             HHH------------------------------------------HHHHHHHHHHHHHHHHCCH---HHHCCCCCHHCCC
Q ss_conf             145------------------------------------------7898999999999984106---7530378011784
Q gi|254780680|r  295 SFT------------------------------------------EHERMLSCAEEILKRLDLH---YRVVSLCTGDLGF  329 (430)
Q Consensus       295 S~~------------------------------------------~~e~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~  329 (430)
                      ...                                          ++...+.....++..++++   .|.......++-.
T Consensus       306 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ti~eav~~g~i~~~~~~~~~~~~~~~l~~~g~~~~~lr~~~~~~~e~a~  385 (693)
T 2zt5_A          306 KDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAH  385 (693)
T ss_dssp             CCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCT
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHH
T ss_conf             55576765554322435602342478734107999987267248999999999889999707777784431155165555


Q ss_pred             HHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC---------------------------------------------
Q ss_conf             43402410110100483323753102100764532---------------------------------------------
Q gi|254780680|r  330 SACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM---------------------------------------------  364 (430)
Q Consensus       330 ~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl---------------------------------------------  364 (430)
                      .+..+.|+|.-.|  -.|.|+.-+.+-+||--...                                             
T Consensus       386 ya~~~~d~e~~~~--~g~~El~Gia~r~~~dL~~~~~~s~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~f~~d~~~v~~  463 (693)
T 2zt5_A          386 YACDCWDAESKTS--YGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVME  463 (693)
T ss_dssp             TCSSEEEEEEEET--TEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC--------------------------------
T ss_pred             HHHHHHHHHCCCC--CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             5543333112567--77210004223346662344321133123211035765015888724744234331445888874


Q ss_pred             -----------------------------------------CCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             -----------------------------------------684733899841010420043228999999998834689
Q gi|254780680|r  365 -----------------------------------------NSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNA  403 (430)
Q Consensus       365 -----------------------------------------~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~  403 (430)
                                                               +..+.+.+++ ...+|+. -.+.-|+|+++||+|++-.+
T Consensus       464 ~~~~~d~~~~~~~~~~l~~~~~~~l~~~G~~f~l~~~~~~~~~~~~~~~g~-~~~P~Mg-cyGIGVsRilaAiiEq~~de  541 (693)
T 2zt5_A          464 YLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVE-EVVPNVI-EPSFGLGRIMYTVFEHTFHV  541 (693)
T ss_dssp             ------------------------------------------------CCE-EECCEEE-EEEEEHHHHHHHHHHHHEEE
T ss_pred             CCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEEECHHHHHHHHHHCCCCCC-EECCEEE-EECCCHHHHHHHHHHHHHHH
T ss_conf             024677521012200113586588732573788544777765540035674-6454689-81367027999999986330


Q ss_pred             CCC------EECCCCCCCCC
Q ss_conf             983------86582223101
Q gi|254780680|r  404 DGS------VTIPTVLRPYM  417 (430)
Q Consensus       404 dg~------i~iP~~L~pym  417 (430)
                      +|-      .+.|..+=||=
T Consensus       542 ~gi~e~R~vL~wP~~IAP~k  561 (693)
T 2zt5_A          542 REGDEQRTFFSFPAVVAPFK  561 (693)
T ss_dssp             CSSTTCCEEECCCTTTSSCS
T ss_pred             CCCCCCEEEEECCCCCCCCE
T ss_conf             27874013764798758957