HHsearch results for GI: 254780680 and protein with PDBid: 3dsq_A
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.61 E-value=3.2e-15 Score=132.20 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH--HCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEE
Q ss_conf 999999862232032021235620278898655--142247677643100023134541145445342059555042088
Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 (430)
Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG--~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~ 255 (430)
|.++..++. .++||.+|.+|.++..+.+...| +...+.+++|..+++++|-|+...+++.+++. .....++|+|++
T Consensus 76 l~~~ir~~~-~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~-~~~~~~~p~r~~ 153 (288)
T 3dsq_A 76 LEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRE-LERLWDKPIRIF 153 (288)
T ss_dssp HHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHH-HTTTSCSCEEEE
T ss_pred HHHHHHHHH-HHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHH-HHHCCCCCEEEE
T ss_conf 999999999-988798998752652215534576544330220476374201343577178899998-630147984899
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEE
Q ss_conf 5322107884335543432122221020021212786501457898999999999984106-753037801178443402
Q gi|254780680|r 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKT 334 (430)
Q Consensus 256 ~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~ 334 (430)
.+++|||.|... --|++||+.+|...++.+. ...+.++...+.++++.||+. |++..-|+...|..
T Consensus 154 ~ig~vfR~E~~~-------~~h~~eFtQ~e~~~~~~~~--~~~~~~l~~l~~~~l~~~g~~~~~~~~~~~~~~~~~---- 220 (288)
T 3dsq_A 154 EIGTCYRKESQG-------AQHLNEFTMLNLTELGTPL--EERHQRLEDMARWVLEAAGIREFELVTESSVVYGDT---- 220 (288)
T ss_dssp EEEEEECSCCSS-------SCCCSEEEEEEEEEETCCG--GGHHHHHHHHHHHHHHHHTCCCCEEEECCCCSSCCC----
T ss_pred EECEEECCCCCC-------CCCCCCEEECCEEEECCCH--HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEE----
T ss_conf 966255568688-------8867827773158986988--999999999999999985997787997047777307----
Q ss_pred EEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf 41011010048332375310210076453268473389984101042004322899999999883468998386582223
Q gi|254780680|r 335 YDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430)
Q Consensus 335 ~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430)
+.....|.|++|+.-.-+.+-+++.+ .....|.|+.+.|+ +.+..+.+ | |+..+...
T Consensus 221 ------~~~~~~~~El~~~~~~~~~~~~~~~~------------~~~~~~~g~gierl-am~~~g~~--d--ir~~~r~~ 277 (288)
T 3dsq_A 221 ------VDVMKGDLELASGAMGPHFLDEKWEI------------FDPWVGLGFGLERL-LMIREGTQ--H--VQSMARSL 277 (288)
T ss_dssp ------EEEEETTEEEEEEEEESCTTTTTTTC------------CSCEEEEEEEHHHH-HHHHHTCS--C--GGGGSSCS
T ss_pred ------EECCCCEEEEECCCCCHHHHHHCCCC------------CCCCEEEECCHHHH-HHHHCCCC--C--HHHHHHCC
T ss_conf ------86189668860687589999865899------------99878873579999-99870998--5--77763124
Q ss_pred CCCCCEEE
Q ss_conf 10188013
Q gi|254780680|r 415 PYMNNLAV 422 (430)
Q Consensus 415 pym~g~~~ 422 (430)
.||+|++.
T Consensus 278 ~y~~Gi~l 285 (288)
T 3dsq_A 278 SYLDGVRL 285 (288)
T ss_dssp SEETTEES
T ss_pred CCCCCCCC
T ss_conf 50066005