HHsearch results for GI: 254780680 and protein with PDBid: 3ikl_A
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.09 E-value=8.2e-10 Score=92.06 Aligned_cols=256 Identities=12% Similarity=0.037 Sum_probs=158.6
Q ss_pred CCCHHHHCCCCCHHHHHHHCC--CCCE----EECCHHHHHHHHHHHHHHHHHHHHCC-CCEEHHHHHCCHHHHHHHHHCH
Q ss_conf 122022117310001122216--7530----10564889999999999986223203-2021235620278898655142
Q gi|254780680|r 141 HFEIGEALGLMDFDRATKLSG--ARFS----VLTGHLAHLERALGQFMIDLHTSEHG-YTEVSAPLLVRDEAMYGTGQIP 213 (430)
Q Consensus 141 H~elge~l~liDfe~a~kvsG--srF~----~Lkg~~A~Le~ALi~y~ld~~~~~~G-y~~v~~P~lv~~~~~~gtG~lp 213 (430)
=++|++.-+.+. -++.|-| ++|| =|=--|+.|-+.|.+......+..+. ...+-. +-
T Consensus 69 ~~~l~krrgf~~--~s~eiygg~~~~~~~~~dyGPlG~~lk~Ni~~~W~~~~v~~~~~~~~~d~--------------~~ 132 (459)
T 3ikl_A 69 LLEICQRRHFLS--GSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDA--------------LH 132 (459)
T ss_dssp HHHHHHHTTSBC--SCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCC--------------CS
T ss_pred HHHHHHHCCCCC--CCCHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC--------------CC
T ss_conf 999997348852--58132057100266788868322999999999999997430587775045--------------55
Q ss_pred HHHHHHHH--HHHCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 24767764--310002313-454114544534205955504208853221078843355434321222210200212127
Q gi|254780680|r 214 KFADDMFC--TTDGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT 290 (430)
Q Consensus 214 ~f~~~~y~--~~d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~ 290 (430)
.|.+-+-- ....-||=| ||---+.++-.-......+||+.++-++.|||-|.-. ..--.||+|+.+|+.-|+..||
T Consensus 133 ~~~~p~~~~~~~~~~yLRPetaqGif~nFkn~~~~~rkkLPfgiaQIGk~FRnEise-i~PR~GL~RvREFtQ~D~e~F~ 211 (459)
T 3ikl_A 133 HKPGPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFT 211 (459)
T ss_dssp BCCSCCCSSCSCCTTB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-CCCCCCCEECCCEEEEEEEEEE
T ss_conf 679998777665424566223451588799999853778986677850111465465-5677773033434720589996
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC----
Q ss_conf 8650145789899999999998410675303780117844340241011010048332375310210076453268----
Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS---- 366 (430)
Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i---- 366 (430)
+|+++.++++.++.....+|..+|++.-.+.....+ ..-+....|++.-+| -.|.|+..+.+.+||.-.....
T Consensus 212 ~P~~~~e~~~~~~~~~~~~~~~lGi~~~~lr~~~h~-~~~a~~~~d~e~~~~--~g~~E~~gia~r~d~dL~~h~~~s~~ 288 (459)
T 3ikl_A 212 PPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQ-DEEGRKGNKLYYNFP--WGKELIETLWNLGDHELLHMYPGNVS 288 (459)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEEC-CSSSSCEEEEEEECS--SCEEEEEEEEEEETHHHHHHSCSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCC-CCCCCCHHHHCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 872468999999999999999968982444653455-211231112136657--78987524222001552000245543
Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCCC
Q ss_conf 47338998410104200432289999999988-3468998-----------386582223101
Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPYM 417 (430)
Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~pym 417 (430)
.+...+.+....+|.+-. ..-+.|.+.|+++ .|+.+++ .++.|..|-||=
T Consensus 289 ~~~~~d~~~~~~p~vie~-s~gldr~l~a~l~~~y~~~~~~~~~~~~~~R~vL~lp~~lAP~k 350 (459)
T 3ikl_A 289 KLHGRDGRKNVVPCVLSV-NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK 350 (459)
T ss_dssp SSCCBSSSCBCCCEEEEE-EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC
T ss_pred CCCCCCCCCCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHCCCE
T ss_conf 333311134433216874-32110678788865324221443466776514443472116760