HHsearch results for GI: 254780680 and protein with PDBid: 3lss_A
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=0 Score=1198.35 Aligned_cols=425 Identities=32% Similarity=0.537 Sum_probs=403.3
Q ss_pred CCCHHHHHC--CHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------
Q ss_conf 988447851--99999999984698958-89999999999999999999999999999999998644998----------
Q gi|254780680|r 1 MLDIQWIRQ--NPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL---------- 67 (430)
Q Consensus 1 MLDik~IRe--n~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~---------- 67 (430)
|||||+||+ ||+.|++++++|+.+.+ +|+|+++|++||++++++|+||+++|.+||+||++++.++.
T Consensus 7 MLDikliRe~~n~d~vre~lkkR~~d~dlVD~il~lD~~rR~l~~e~e~Lr~erN~iSK~Ig~~kk~~~~~~d~~~~~~~ 86 (484)
T 3lss_A 7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQ 86 (484)
T ss_dssp CCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred ECCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 01189986589869999999874998789999999999999999999999999869999999998468754104454444
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC-CCCCEEEEEEC
Q ss_conf -----------------799999999999998864446666677888774431002258811221135-55402420001
Q gi|254780680|r 68 -----------------SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS-ANENILIRSVG 129 (430)
Q Consensus 68 -----------------~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~d-e~dNv~i~~~G 129 (430)
.++++|++++++|+++|+.+++++.++++++++++++|||+||++||+|+| |++|++++.||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~ele~~l~~lll~IPNiph~~VP~G~dee~~Nv~i~~~g 166 (484)
T 3lss_A 87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFG 166 (484)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEES
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 43322100000001224469999999999999999999999999999999997289977865788875356718997458
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHHH-HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH
Q ss_conf 5656656662112202211731000112-221675301056488999999999998622320320212356202788986
Q gi|254780680|r 130 KKPSAIHLSREHFEIGEALGLMDFDRAT-KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430)
Q Consensus 130 ~~~~f~f~~k~H~elge~l~liDfe~a~-kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430)
+++.| .+++|||||+.++++||++|+ |+||||||||+|+||+|||||+|||+|+|+ ++||++|+||+|||+++|+|
T Consensus 167 ~~~~~--~~k~H~el~e~l~~iD~e~aaskvsGsrf~~lkg~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~g 243 (484)
T 3lss_A 167 NTTKR--AKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLV-KRGYTPFYPPFFLNRDVMGE 243 (484)
T ss_dssp CTTCC--CSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHHHH
T ss_pred CCCCC--CCCCHHHHHHHCCCCCHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHCCC
T ss_conf 64666--7765667776558622244223100487489789802588999999999765-16974414863222220376
Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 551422476776431---00023134541145445342059555042088532210788433554343212222102002
Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285 (430)
Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE 285 (430)
|||+|+|++++|++. +++||||||||||+|||+|++|++++||+||+|+|||||+||||||+|||||||||||+|||
T Consensus 244 tG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE 323 (484)
T 3lss_A 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIE 323 (484)
T ss_dssp HSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEE
T ss_pred CCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
T ss_conf 45776520104031026764246224666366666430102322876563018888854434466778705761134489
Q ss_pred EEECCCCC--CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 12127865--0145789899999999998410675303780117844340241011010048332375310210076453
Q gi|254780680|r 286 LVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR 363 (430)
Q Consensus 286 ~~~~~~pe--~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR 363 (430)
||+||+|+ +|+++|++|+.++++||+.||||||||+|||||||++|+||||||||||||++|+|||||||||||||||
T Consensus 324 ~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~~sgdlg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQsrR 403 (484)
T 3lss_A 324 QFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQS 403 (484)
T ss_dssp EEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHHHC
T ss_conf 99984686122289999999999999985487069974058777822334688898866779757787742552376641
Q ss_pred CCCEEECC-----CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC
Q ss_conf 26847338-----9984101042004322899999999883468998386582223101880130733457
Q gi|254780680|r 364 MNSRYRDP-----NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL 429 (430)
Q Consensus 364 l~iry~~~-----~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~ 429 (430)
||||||+. .+++++||||||||||||||+|+||||||||+|| |+||+||||||||+++|+++..+
T Consensus 404 l~iry~~~~~~~~~~~~~~~~HtlNgt~~A~~R~l~ailEn~q~~dg-~~iP~~L~pym~g~~~i~~~~~~ 473 (484)
T 3lss_A 404 VNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENNA 473 (484)
T ss_dssp HTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCGGGGGGTTTCCEEECCCC-
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEECCCCCC
T ss_conf 40501576555555677504575106300887899888873618997-18880005767997030688888