HHsearch results for GI: 254780680 and protein with PDBid: 3mf2_A
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Probab=100.00 E-value=0 Score=406.53 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=245.6
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 02258811221135554024200015656656662112202211731000112221675301056488999999999998
Q gi|254780680|r 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMID 184 (430)
Q Consensus 105 IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld 184 (430)
+|+..|..||+.+ ++|.+.+ ..|.++++.++.+|+++|++.+++||+++++.+++||+++..
T Consensus 15 vprgs~~~~~~~~------------~~p~~a~--~~~~~l~~~~~~~~~~~ga~g~y~~~~~~~~v~~~le~~i~~---- 76 (346)
T 3mf2_A 15 VPRGSHMNIAVLP------------NSPDTAP--QIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS---- 76 (346)
T ss_dssp ------------------------------------CCTTGGGHHHHEEEEEETTEEEEEHHHHHHHHHHHHHHHH----
T ss_pred CCCCCCCCCEECC------------CCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH----
T ss_conf 6578866540137------------8986456--640689999852222216755564289999999999999999----
Q ss_pred HHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----------------------------HCCEECCCCCCHH
Q ss_conf 622320320212356202788986551422476776431----------------------------0002313454114
Q gi|254780680|r 185 LHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----------------------------DGRWLIPTSEVSL 236 (430)
Q Consensus 185 ~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----------------------------d~l~Li~TaEvpL 236 (430)
+ .++||+++..|.+++.+.+++||++++|.+++|.+. .+++|+||+|+++
T Consensus 77 -~-~~~G~~~v~~P~l~~~e~~~~sg~~~~f~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Pt~c~~i 154 (346)
T 3mf2_A 77 -H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPV 154 (346)
T ss_dssp -T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSSSTTH
T ss_pred -H-HHCCCEEEECCCEECHHHHHHCCCHHHCHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHH
T ss_conf -9-97798698688543499997548621043340684136775201222110012344311134776568707871888
Q ss_pred HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 54453420595550420885322107884335543432122221020021212786501457898999999999984106
Q gi|254780680|r 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430)
Q Consensus 237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430)
++++++++. ..+||++|+.+|+|||.|++ +||+|+|||+++|++.||+|+++.++++++++.++++|+.||||
T Consensus 155 ~~~~~~~~~-~~dlP~~~~~~~~~fR~E~~------~Gl~R~reF~~~E~~~f~~~e~~~~~~~~~~~~~~~i~~~LgL~ 227 (346)
T 3mf2_A 155 YPIAASRGP-LPKGGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT 227 (346)
T ss_dssp HHHHHTTCS-CCTTCEEEEEEEEEECCCCC------SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCC-CCCCCEEEEEECCEEECCCC------CCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999725735-51348799997478837899------99932377899999999858999999999999999999987997
Q ss_pred HHHCCCCC---HHCCCHHHE-------EEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCH
Q ss_conf 75303780---117844340-------24101101004833237531021007645326847338998410104200432
Q gi|254780680|r 317 YRVVSLCT---GDLGFSACK-------TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSG 386 (430)
Q Consensus 317 yRvv~~~s---gdlg~~a~~-------~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~ 386 (430)
||++..|+ ||+|..+.+ +||+|+|+|++++|.||+|++||+||||+|++|+|.+. +++|| +..|
T Consensus 228 ~~~~~a~d~~~gd~g~~~~~~~~~~~~k~d~e~~~p~~~~~~evgsi~~~gd~~~~r~~i~~~d~-----~~~h~-~~~G 301 (346)
T 3mf2_A 228 FRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANG-----EPAHT-GCVA 301 (346)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCBCTTS-----SBCEE-EEEE
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEECC-----CEEEE-CCCC
T ss_conf 69998258888744148776332203247999980899977888316414775673359888189-----97887-6774
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEC
Q ss_conf 28999999998834689983865822231018801307
Q gi|254780680|r 387 VAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIK 424 (430)
Q Consensus 387 ~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~ 424 (430)
+++.|+++||||+|+.+.+ .-|+..|.+++-...+.
T Consensus 302 ~g~eR~v~aliE~h~~~~~--~Wp~~vr~~l~l~P~~a 337 (346)
T 3mf2_A 302 FGMDRLAVAMFHTHGTDLS--AWPAKVRDILGLQPHVA 337 (346)
T ss_dssp EEHHHHHHHHHHHHCSCGG--GSCHHHHHHTTSCCC--
T ss_pred CHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCCCC
T ss_conf 6599999999996799989--88588887742785333