HHsearch results for GI: 254780680 and protein with PDBid: 3nem_A
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=95.70 E-value=0.018 Score=37.55 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555
Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430)
Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430)
+.-++--++++.+-++ +.++||++|.+|.|.....--|.-.+|. . ....++||.-..|..+ ...+-. -
T Consensus 135 ~~~~~Rs~i~~~iR~f-l~~~gF~EVeTPiL~~~~~eg~a~~f~~---~--~~~~~~~L~~Spel~l-----k~l~~~-G 202 (438)
T 3nem_A 135 AIFKIRSSVFKAVRDF-FHENGFIEIHTPKIIATATEGGTELFPM---K--YFEEDAFLAQSPQLYK-----QIMMAS-G 202 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCSSCSSSCCEE---E--ETTEEEEECSCSHHHH-----HHGGGT-T
T ss_pred CEEHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCCCCC---C--CCCCCEEEECCHHHHH-----HHHHHC-C
T ss_conf 2006889999999998-7547967997764424466655444663---1--3688753503856887-----887651-4
Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEE
Q ss_conf 042088532210788433554343212222-10200212
Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELV 287 (430)
Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~ 287 (430)
+ =|+..+++|||.|-. ++ -|.| +|.-+|..
T Consensus 203 ~-~rvfei~~~FR~E~~----~~---~rh~~ef~~~~~~ 233 (438)
T 3nem_A 203 L-DRVYEIAPIFRAEEH----NT---TRHLNEAWSIDSE 233 (438)
T ss_dssp C-CEEEEEEEEECCCSS----CC---TTCCSEEEEEEEE
T ss_pred C-CCEEEEEEECCCCCC----CC---CCCCCCEEEEHHH
T ss_conf 8-852897330144557----77---5544238870889