Query gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 430 No_of_seqs 246 out of 2490 Neff 6.6 Searched_HMMs 23785 Date Tue May 31 17:56:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780680.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dq0_A Seryl-tRNA synthetase; 100.0 0 0 1246.0 31.8 424 1-427 1-448 (455) 2 1wle_A Seryl-tRNA synthetase; 100.0 0 0 1207.0 32.5 425 1-429 40-480 (501) 3 3lss_A Seryl-tRNA synthetase; 100.0 0 0 1198.4 31.2 425 1-429 7-473 (484) 4 2dq3_A Seryl-tRNA synthetase; 100.0 0 0 1175.3 28.7 422 1-426 1-425 (425) 5 1ses_A Seryl-tRNA synthetase; 100.0 0 0 1124.7 30.4 418 1-427 1-421 (421) 6 3err_A Fusion protein of micro 100.0 0 0 1012.1 30.8 419 1-427 1-530 (536) 7 2cja_A Seryl-tRNA synthetase; 100.0 0 0 433.1 12.2 300 103-422 166-517 (522) 8 3mf2_A BLL0957 protein; aminoa 100.0 0 0 406.5 7.5 285 105-424 15-337 (346) 9 1nj1_A Proline-tRNA synthetase 100.0 3.1E-35 1.3E-39 281.0 15.0 293 103-417 13-316 (501) 10 3ial_A Prolyl-tRNA synthetase; 99.9 2.4E-25 1E-29 207.4 13.9 264 140-417 25-301 (518) 11 1hc7_A Prolyl-tRNA synthetase; 99.9 8.8E-25 3.7E-29 203.3 12.9 267 131-417 9-289 (477) 12 1nj8_A Proline-tRNA synthetase 99.9 4.6E-24 1.9E-28 198.0 14.0 264 140-417 8-284 (459) 13 1nyr_A Threonyl-tRNA synthetas 99.9 9.9E-25 4.2E-29 202.9 9.3 264 138-416 240-546 (645) 14 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.5E-23 6.4E-28 194.1 12.9 264 138-416 241-540 (642) 15 1evl_A Threonyl-tRNA synthetas 99.8 2E-20 8.4E-25 170.9 13.2 263 139-417 1-300 (401) 16 2i4l_A Proline-tRNA ligase; al 99.8 4E-19 1.7E-23 161.2 13.4 256 159-424 54-372 (458) 17 3a32_A Probable threonyl-tRNA 99.8 7.1E-19 3E-23 159.4 10.4 269 138-416 6-339 (471) 18 2j3l_A Prolyl-tRNA synthetase; 99.7 3.5E-17 1.5E-21 146.8 13.5 182 139-332 21-207 (572) 19 3dsq_A Pyrrolysyl-tRNA synthet 99.6 3.2E-15 1.4E-19 132.2 9.9 207 178-422 76-285 (288) 20 2zt5_A Glycyl-tRNA synthetase; 99.2 3.1E-10 1.3E-14 95.2 11.4 265 143-417 72-561 (693) 21 3ikl_A DNA polymerase subunit 99.1 8.2E-10 3.4E-14 92.1 10.4 256 141-417 69-350 (459) 22 2zin_A Pyrrolysyl-tRNA synthet 99.1 3.2E-09 1.3E-13 87.7 12.2 208 170-421 79-288 (291) 23 1qe0_A Histidyl-tRNA synthetas 99.1 3.6E-10 1.5E-14 94.7 7.3 146 162-317 6-158 (420) 24 3net_A Histidyl-tRNA synthetas 98.9 4.6E-09 1.9E-13 86.5 8.5 153 162-323 16-185 (465) 25 1ati_A Glycyl-tRNA synthetase; 98.8 4E-09 1.7E-13 86.9 5.8 269 144-424 11-405 (505) 26 1h4v_B Histidyl-tRNA synthetas 98.8 1E-08 4.4E-13 83.9 6.9 145 162-316 7-157 (421) 27 1htt_A Histidyl-tRNA synthetas 98.7 1.3E-07 5.6E-12 75.6 9.9 149 162-321 8-162 (423) 28 1g5h_A Mitochondrial DNA polym 98.7 1.1E-07 4.5E-12 76.3 9.3 187 224-416 135-339 (454) 29 3lc0_A Histidyl-tRNA synthetas 98.2 3.4E-06 1.4E-10 65.1 6.9 142 161-316 32-179 (456) 30 1wu7_A Histidyl-tRNA synthetas 98.1 1.4E-05 6.1E-10 60.5 9.0 140 163-315 11-154 (434) 31 3od1_A ATP phosphoribosyltrans 98.0 3.3E-05 1.4E-09 57.9 8.6 140 163-316 15-159 (400) 32 1z7m_A ATP phosphoribosyltrans 97.7 0.00021 8.8E-09 51.9 8.4 141 166-321 30-178 (344) 33 2rhq_A Phenylalanyl-tRNA synth 97.6 0.00041 1.7E-08 49.7 9.3 192 179-395 59-265 (294) 34 2odr_A Phosphoseryl-tRNA synth 97.6 0.00023 9.9E-09 51.5 7.5 181 175-368 148-332 (665) 35 2du7_A O-phosphoseryl-tRNA syn 97.5 0.00048 2E-08 49.2 8.3 114 243-368 209-325 (549) 36 2odr_C Phosphoseryl-tRNA synth 97.4 0.00045 1.9E-08 49.4 7.0 178 174-367 147-331 (701) 37 2odr_B Phosphoseryl-tRNA synth 97.3 0.00072 3E-08 47.9 7.3 182 174-368 147-332 (648) 38 2odr_D Phosphoseryl-tRNA synth 97.2 0.00083 3.5E-08 47.4 6.6 169 187-368 160-332 (685) 39 3l4g_A Phenylalanyl-tRNA synth 97.1 0.0035 1.5E-07 42.8 8.7 171 179-366 231-448 (508) 40 3bju_A Lysyl-tRNA synthetase; 97.1 0.00071 3E-08 47.9 5.1 117 171-311 175-291 (521) 41 3a5y_A GENX, putative lysyl-tR 97.0 0.00074 3.1E-08 47.8 4.9 138 153-313 15-158 (345) 42 1b7y_A Phers, protein (phenyla 96.9 0.0039 1.7E-07 42.4 8.1 195 179-394 107-324 (350) 43 2du3_A O-phosphoseryl-tRNA syn 96.8 0.0028 1.2E-07 43.5 6.4 114 241-368 195-321 (534) 44 1e1o_A Lysyl-tRNA synthetase; 96.8 0.0012 4.9E-08 46.3 4.5 118 171-313 182-300 (504) 45 3i7f_A Aspartyl-tRNA synthetas 96.7 0.0064 2.7E-07 40.8 7.9 115 171-304 243-359 (548) 46 3a74_A Lysyl-tRNA synthetase; 96.7 0.0013 5.3E-08 46.1 4.2 115 173-305 175-290 (493) 47 1usy_A ATP phosphoribosyltrans 96.5 0.0014 5.7E-08 45.8 2.9 115 178-316 9-123 (275) 48 1x54_A Asparaginyl-tRNA synthe 96.5 0.0015 6.3E-08 45.5 3.2 115 171-305 134-249 (434) 49 1wyd_A Hypothetical aspartyl-t 96.4 0.0037 1.6E-07 42.6 4.7 112 172-303 134-246 (429) 50 1eov_A ASPRS, aspartyl-tRNA sy 96.3 0.0038 1.6E-07 42.5 4.6 206 170-416 176-385 (487) 51 3m4p_A Ehasnrs, asparaginyl-tR 96.2 0.0039 1.6E-07 42.4 4.2 114 171-304 155-269 (456) 52 1nnh_A Asparaginyl-tRNA synthe 95.8 0.0094 4E-07 39.6 4.4 118 171-303 14-137 (294) 53 1m1j_B Fibrinogen beta chain; 95.8 0.054 2.3E-06 34.0 8.2 36 73-108 166-201 (464) 54 3nem_A Aspartyl-tRNA synthetas 95.7 0.018 7.5E-07 37.5 5.6 98 170-287 135-233 (438) 55 1m1j_B Fibrinogen beta chain; 95.6 0.048 2E-06 34.3 7.4 42 68-109 168-209 (464) 56 1c0a_A Aspartyl tRNA synthetas 95.5 0.0095 4E-07 39.6 3.6 120 170-313 136-255 (585) 57 1l0w_A Aspartyl-tRNA synthetas 95.4 0.019 7.9E-07 37.4 4.9 116 169-303 141-258 (580) 58 1n9w_A Aspartyl-tRNA synthetas 95.0 0.09 3.8E-06 32.3 7.3 110 173-302 126-237 (422) 59 1m1j_C Fibrinogen gamma chain; 93.8 0.24 1E-05 29.2 7.3 30 29-58 39-68 (409) 60 3ghg_A Fibrinogen alpha chain; 93.4 0.24 9.9E-06 29.2 6.7 28 30-57 87-114 (562) 61 1gqe_A Release factor 2, RF2; 92.3 0.7 2.9E-05 25.7 8.1 28 1-28 1-28 (365) 62 3ghg_B Fibrinogen beta chain; 91.4 0.48 2E-05 26.9 6.3 26 77-102 165-190 (461) 63 3ghg_A Fibrinogen alpha chain; 90.5 0.76 3.2E-05 25.4 6.6 21 34-54 56-76 (562) 64 1deq_A Fibrinogen (alpha chain 90.3 1.1 4.5E-05 24.3 9.2 21 35-55 60-80 (390) 65 3l4g_B Phenylalanyl-tRNA synth 86.8 1.8 7.4E-05 22.7 8.1 190 130-346 350-549 (589) 66 3hnw_A Uncharacterized protein 86.7 1.8 7.5E-05 22.7 10.7 68 33-100 66-135 (138) 67 1l8d_A DNA double-strand break 85.3 2.1 8.7E-05 22.2 9.8 69 33-101 15-97 (112) 68 1m1j_A Fibrinogen alpha subuni 84.9 2.2 9.1E-05 22.1 10.4 74 28-102 86-159 (491) 69 3d5a_X RF1, peptide chain rele 83.4 2.5 0.0001 21.6 11.9 109 1-126 1-110 (354) 70 1zvu_A Topoisomerase IV subuni 81.0 3 0.00013 21.0 5.6 22 70-91 404-425 (716) 71 3ica_A Phenylalanyl-tRNA synth 79.6 3.3 0.00014 20.7 6.9 136 179-320 10-158 (213) 72 1gax_A Valrs, valyl-tRNA synth 74.6 4.5 0.00019 19.7 5.1 12 108-119 176-187 (862) 73 1zbt_A RF-1, peptide chain rel 71.0 4.8 0.0002 19.5 4.3 44 345-398 314-359 (371) 74 2xcs_B DNA gyrase subunit B, D 70.5 4.7 0.0002 19.5 4.2 13 103-115 234-246 (692) 75 2yy0_A C-MYC-binding protein; 69.3 5.5 0.00023 19.0 4.3 35 66-100 17-51 (53) 76 2f23_A Anti-cleavage anti-GREA 69.2 5.8 0.00025 18.8 8.3 74 35-116 10-86 (156) 77 2ke4_A CDC42-interacting prote 67.2 6.4 0.00027 18.6 6.3 74 30-106 17-93 (98) 78 2p4v_A Transcription elongatio 65.1 6.9 0.00029 18.3 8.7 79 35-117 9-89 (158) 79 1grj_A GREA protein; transcrip 63.5 7.4 0.00031 18.1 8.7 78 35-116 9-89 (158) 80 3cmq_A Phenylalanyl-tRNA synth 63.1 7.5 0.00032 18.0 9.7 173 171-366 50-268 (415) 81 2f4m_A Peptide N-glycanase; gl 61.9 3.8 0.00016 20.2 2.3 50 301-358 145-194 (295) 82 2v4h_A NF-kappa-B essential mo 58.6 8.9 0.00037 17.5 10.0 75 18-94 14-88 (110) 83 3na7_A HP0958; flagellar bioge 57.8 9.1 0.00038 17.4 10.4 64 32-100 15-78 (256) 84 3frt_A Charged multivesicular 56.1 9.7 0.00041 17.2 11.5 74 28-105 14-87 (218) 85 3iox_A AGI/II, PA; alpha helix 54.6 10 0.00043 17.0 10.4 27 74-100 79-105 (497) 86 2bsg_A Fibritin; viral protein 54.4 10 0.00043 17.0 9.9 32 29-60 55-86 (487) 87 1s35_A Beta-I spectrin, spectr 53.7 11 0.00044 16.9 12.8 90 11-100 16-105 (214) 88 2qyw_A Vesicle transport throu 52.2 11 0.00047 16.8 8.7 57 35-91 45-101 (102) 89 2ihr_1 Peptide chain release f 51.9 0.89 3.8E-05 24.9 -2.3 46 343-398 303-350 (365) 90 1ew3_A Allergen EQU C 1; lipoc 51.8 4.8 0.0002 19.4 1.5 30 291-324 120-150 (159) 91 1fxk_A Prefoldin; archaeal pro 51.4 11 0.00048 16.7 11.4 79 27-105 7-102 (107) 92 3lay_A Zinc resistance-associa 51.2 12 0.00048 16.6 10.3 74 25-101 68-143 (175) 93 3ig2_A Phenylalanyl-tRNA synth 50.5 12 0.0005 16.6 7.3 136 177-318 8-156 (213) 94 2b3t_B RF-1, peptide chain rel 50.5 12 0.0005 16.6 4.1 48 344-401 300-349 (360) 95 2gd5_A Charged multivesicular 50.4 12 0.0005 16.6 11.5 76 27-106 13-88 (179) 96 1vcs_A Vesicle transport throu 49.1 12 0.00052 16.4 7.1 61 35-95 34-94 (102) 97 2inr_A DNA topoisomerase 4 sub 48.7 13 0.00053 16.4 5.2 20 192-211 179-198 (514) 98 2a2u_A Protein (alpha-2U-globu 47.9 5 0.00021 19.3 1.1 22 292-317 143-164 (181) 99 3kff_A MUP 4, major urinary pr 45.6 9 0.00038 17.4 2.1 33 291-327 123-156 (162) 100 3ilw_A DNA gyrase subunit A; D 44.6 14 0.0006 15.9 5.2 20 192-211 136-155 (470) 101 2dfs_A Myosin-5A; myosin-V, in 44.3 14 0.00061 15.9 10.4 21 163-185 440-460 (1080) 102 2xkj_E Topoisomerase IV; type 44.1 15 0.00061 15.9 5.5 20 192-211 425-444 (767) 103 2ra6_A Trichosurin; lipocalin, 43.5 10 0.00044 16.9 2.1 24 291-318 132-155 (166) 104 1fzc_B Fibrin; blood coagulati 43.2 5.3 0.00022 19.1 0.6 37 73-109 35-71 (328) 105 3isr_A Transglutaminase-like e 41.2 15 0.00062 15.9 2.6 56 300-358 182-237 (293) 106 1gk4_A Vimentin; intermediate 40.9 16 0.00068 15.5 7.1 20 43-62 2-21 (84) 107 1g0d_A Protein-glutamine gamma 40.4 9.5 0.0004 17.3 1.5 26 304-329 277-304 (695) 108 1ex0_A Coagulation factor XIII 40.3 9.7 0.00041 17.2 1.6 26 304-329 319-346 (731) 109 2b5u_A Colicin E3; high resolu 40.2 17 0.0007 15.5 10.1 12 81-92 355-366 (551) 110 2djv_A Methionyl-tRNA syntheta 40.1 17 0.0007 15.5 7.1 49 42-90 13-62 (79) 111 2eqb_B RAB guanine nucleotide 39.8 17 0.00071 15.4 7.0 24 33-56 24-47 (97) 112 1x3z_A Peptide:N-glycanase; pr 38.8 17 0.00071 15.4 2.6 50 301-358 186-235 (335) 113 3l4r_A Allergen DOG 2, minor a 38.1 7.3 0.0003 18.1 0.6 33 291-327 123-156 (170) 114 3iyk_A VP5; icosahedral virus; 36.7 19 0.00078 15.1 9.8 35 379-414 488-524 (526) 115 1vjj_A Protein-glutamine gluta 36.7 8.9 0.00037 17.5 0.9 26 304-329 277-304 (692) 116 2xst_A Lipocalin 15; transport 36.6 11 0.00045 16.9 1.3 34 287-324 121-156 (161) 117 2wuj_A Septum site-determining 34.4 19 0.0008 15.0 2.3 13 20-32 17-30 (57) 118 3gbj_A KIF13B protein; kinesin 34.3 9.5 0.0004 17.3 0.7 42 380-421 271-319 (354) 119 2gzd_C RAB11 family-interactin 34.3 15 0.00062 15.8 1.7 39 71-109 49-91 (107) 120 1a31_A Protein (topoisomerase 32.6 9.1 0.00038 17.4 0.4 16 159-174 246-261 (591) 121 1f75_A Undecaprenyl pyrophosph 32.4 22 0.00091 14.6 4.6 57 72-138 153-209 (249) 122 2zqm_A Prefoldin beta subunit 31.5 22 0.00094 14.5 11.3 74 29-102 14-104 (117) 123 2zpn_A Autophagy-related prote 30.0 11 0.00046 16.8 0.4 47 354-406 61-107 (119) 124 2wps_A Trimeric autotransporte 29.8 24 0.001 14.3 10.4 63 34-101 33-95 (107) 125 2qsf_A RAD4, DNA repair protei 28.8 25 0.001 14.2 3.0 43 150-200 149-192 (533) 126 2jee_A YIIU; FTSZ, septum, coi 28.7 25 0.001 14.2 10.2 65 30-99 15-79 (81) 127 1epa_A Epididymal retinoic aci 28.4 14 0.00058 16.1 0.7 29 291-323 120-148 (164) 128 2r6a_C DNAG primase, helicase 27.3 26 0.0011 14.0 6.3 41 45-85 101-141 (143) 129 2rhq_B Phenylalanyl-tRNA synth 26.9 27 0.0011 13.9 3.6 176 130-320 450-639 (795) 130 3bx6_A Alpha-1-acid glycoprote 25.4 24 0.001 14.2 1.6 40 288-331 126-168 (192) 131 1beb_A Beta-lactoglobulin; lip 25.1 26 0.0011 14.1 1.6 23 291-317 125-147 (162) 132 3gr1_A Protein PRGH; type III 25.0 23 0.00096 14.4 1.4 25 300-324 132-156 (227) 133 1fio_A SSO1 protein; four heli 25.0 29 0.0012 13.7 11.2 67 32-98 6-72 (196) 134 3o22_A Prostaglandin-H2 D-isom 24.3 29 0.0012 13.6 2.6 23 292-318 125-147 (162) 135 2vg3_A Undecaprenyl pyrophosph 24.2 30 0.0012 13.6 3.9 16 123-138 229-244 (284) 136 1u5p_A Spectrin alpha chain, b 24.2 30 0.0012 13.6 11.3 89 11-100 19-107 (216) 137 1f32_A Major pepsin inhibitor 23.9 24 0.00099 14.3 1.3 33 84-117 104-136 (149) 138 3gr0_A Protein PRGH; type III 23.2 24 0.001 14.3 1.2 25 300-324 132-156 (197) 139 1ul7_A MAP/microtubule affinit 23.0 31 0.0013 13.4 2.9 54 294-347 16-75 (102) 140 3c9i_A Tail needle protein GP2 23.0 31 0.0013 13.4 10.9 20 162-181 205-224 (242) 141 2gr7_A Adhesin; trimeric autot 22.8 31 0.0013 13.4 3.8 47 68-114 25-74 (129) 142 1dzk_A PIG OBP, odorant-bindin 22.6 28 0.0012 13.8 1.4 33 291-327 121-154 (157) 143 1ueh_A Undecaprenyl pyrophosph 22.4 32 0.0013 13.4 4.0 57 72-138 150-206 (253) 144 2wew_A Apolipoprotein M; lipid 22.0 32 0.0014 13.3 2.0 19 290-308 133-151 (172) 145 1eo6_A GATE-16, golgi-associat 21.4 19 0.00078 15.1 0.3 27 378-405 77-103 (117) 146 2hlv_A Odorant-binding protein 21.1 34 0.0014 13.2 1.7 29 291-323 122-151 (160) 147 1bj7_A D 2; allergen, lipocali 20.7 29 0.0012 13.7 1.2 32 291-326 120-152 (156) 148 1dip_A Delta-sleep-inducing pe 20.7 34 0.0014 13.1 1.6 27 74-100 14-40 (78) 149 2p41_A Type II methyltransfera 20.4 35 0.0015 13.1 2.0 12 331-342 219-230 (305) 150 2pms_C Pneumococcal surface pr 20.1 35 0.0015 13.0 7.7 60 37-101 63-122 (125) No 1 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=100.00 E-value=0 Score=1246.04 Aligned_cols=424 Identities=38% Similarity=0.636 Sum_probs=412.1 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 98844785199999999984698958---899999999999999999999999999999999986449987999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ---SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET 77 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~---id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~ 77 (430) |||||+||+||+.|++++++||.+.+ +|+++++|++||+++.++++||++||++||+||++++++++ ++++++++ T Consensus 1 MLDik~iRenpe~v~~~l~~R~~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~--~~~l~~~~ 78 (455) T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKS 78 (455) T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH T ss_conf 9897887769999999998649963155799999999999999999999999999999999999867997--89999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------------------CCC Q ss_conf 999988644466666778887744310022588112211355540242000156566--------------------566 Q gi|254780680|r 78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSA--------------------IHL 137 (430) Q Consensus 78 ~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f--------------------~f~ 137 (430) ++|+++|+.+++++++++++++++++.|||+||++||+|.||+||++|++||++|.| +|+ T Consensus 79 ~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f~~~~~~~~~~~~~~~~~~~~~f~ 158 (455) T 2dq0_A 79 REIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWK 158 (455) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999999999999999999999997276777866687888666646785057556555532111234555565667887 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) |++|||||+.+|++||++|+|+||||||||+|+||+|||||+|||||++ .++||++|+||+|||+++|+||||+|+|++ T Consensus 159 ~k~H~el~e~l~liDfe~~akvsGsrf~~Lkg~~A~Le~ALi~f~ld~~-~~~Gy~~v~pP~iV~~~~~~gtGqlp~f~~ 237 (455) T 2dq0_A 159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFED 237 (455) T ss_dssp CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHH T ss_pred CCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHCCCCCCCHH T ss_conf 6769999877187314333212578647835808899999999999750-001654623861102788734268987601 Q ss_pred HHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH Q ss_conf 776431-0002313454114544534205955504208853221078843355434321222210200212127865014 Q gi|254780680|r 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 (430) Q Consensus 218 ~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~ 296 (430) |+|+++ +|+||||||||||+|||+|++|+.++||+||+|+|||||+||||||||||||||||||+|||||+||+||+|+ T Consensus 238 ~~Y~i~~~dl~Li~TaEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~ 317 (455) T 2dq0_A 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW 317 (455) T ss_dssp TCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH T ss_pred CEEEECCCCEEECCCCCCCHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCH T ss_conf 04785599757436443204444401325787789202465897886555578764012201221426899834897319 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCC Q ss_conf 57898999999999984106753037801178443402410110100483323753102100764532684733899841 Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSL 376 (430) Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~ 376 (430) ++|++|+.++++||++||||||||+|||||||++|+||||||||||||++|+||||||||||||||||||||+++.++++ T Consensus 318 ~~~e~~~~~~~~i~~~L~lpyrvv~~~s~dlg~~a~~k~DiE~w~P~~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~ 397 (455) T 2dq0_A 318 EWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKP 397 (455) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCCC T ss_conf 99999999999999975996589881376678771218999988557786245746615435766133445126899963 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 010420043228999999998834689983865822231018801307334 Q gi|254780680|r 377 KFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 377 ~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) +||||||||||||||+|+||||||||+||+|+||+||||||||.++|++.. T Consensus 398 ~~~HtlNgt~lav~R~l~ailEn~q~~dg~i~iP~~L~pymg~~~~~~~~~ 448 (455) T 2dq0_A 398 RYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEK 448 (455) T ss_dssp EECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHSCSEECCCC- T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEEECCCC T ss_conf 554533064018878999999847389986868854463459958841552 No 2 >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Probab=100.00 E-value=0 Score=1207.03 Aligned_cols=425 Identities=29% Similarity=0.494 Sum_probs=408.9 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------HHHH Q ss_conf 9884478519999999998469895---889999999999999999999999999999999998644998------7999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEP---QSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL------SLVD 71 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~---~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~------~~~~ 71 (430) |||||+||+|||.|+++|++|++++ ++|+|+++|++||++++++++||++||++||+||++++++++ ++++ T Consensus 40 MLDik~Irenpe~v~~~l~~R~~~~~~~dld~il~ld~e~r~l~~e~e~Lr~erN~~sk~I~~l~~~~~~~~~~~~~e~e 119 (501) T 1wle_A 40 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQ 119 (501) T ss_dssp CCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHH T ss_conf 62799987699999999997289743342999999999999999999999999999999999998567751000368999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCC Q ss_conf 99999999998864446666677888774431002258811221135554024200015656656662112202211731 Q gi|254780680|r 72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLM 151 (430) Q Consensus 72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~li 151 (430) +|++++++|+++++.+++++++++++++.+++.|||+||++||+| +|++|++|++||++|.|+|+||+|||||+.+|++ T Consensus 120 ~L~~~~k~lk~~i~~le~~~~~l~~~l~~~ll~iPNi~~~~VP~G-~e~~n~vv~~~G~~~~f~f~pk~H~elge~l~li 198 (501) T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQARVLHVVGDKPAFSFQPRGHLEIAEKLDII 198 (501) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC T ss_conf 999999999999999999999999999999974899888557989-8776879840378647888852167776653120 Q ss_pred CHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH-----HCC Q ss_conf 000112221675301056488999999999998622320320212356202788986551422476776431-----000 Q gi|254780680|r 152 DFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-----DGR 226 (430) Q Consensus 152 Dfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~-----d~l 226 (430) ||++|+||||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|... +++ T Consensus 199 Dfe~aakvsGsrfy~LkG~~A~LerALi~f~ld~l~-~~Gy~~v~pP~iV~~~~~~gtGqlPkfe~~~~~~~~~~~~ddl 277 (501) T 1wle_A 199 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLI-HRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDL 277 (501) T ss_dssp ECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSC T ss_pred CHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHH-HCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE T ss_conf 133200354787189828299999999999999755-2598899243550166775542484343122777404432220 Q ss_pred EECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC--CCHHHHHHHHHH Q ss_conf 231345411454453420595550420885322107884335543432122221020021212786--501457898999 Q gi|254780680|r 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLS 304 (430) Q Consensus 227 ~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p--e~S~~~~e~~~~ 304 (430) ||||||||||+|||+|+||+.++||+||+|+|||||+||| +|||||||||||||+|||||+||+| |+|+++|++|+. T Consensus 278 ~LipTAEvpL~~~~~~eil~~~~LPik~~a~s~CFR~EAG-~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~l~ 356 (501) T 1wle_A 278 NLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS 356 (501) T ss_dssp EECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHH T ss_conf 0103223453202343203200087114312773055634-456776722566214268999836870133999999999 Q ss_pred HHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECC Q ss_conf 99999998410675303780117844340241011010048332375310210076453268473389984101042004 Q gi|254780680|r 305 CAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNG 384 (430) Q Consensus 305 ~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNg 384 (430) ++++||++||||||||+|||||||++|+||||||||||||++|+|||||||||||||||||||||+++++ ++||||||| T Consensus 357 ~~e~il~~L~LpyRvv~~~sgDLg~~a~kkyDiE~W~P~~~~y~EvsS~Snc~DfQaRRl~iry~~~~~k-~~~~HTLNg 435 (501) T 1wle_A 357 LQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNA 435 (501) T ss_dssp HHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSC-EEECEEEEE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHEEEEEEEECCCCCEEEEEEEECCCCHHHHHCCCEEECCCCC-EEEEEECCC T ss_conf 9999986448854998716777674344457689985588976778877031338663036644079998-556464437 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC Q ss_conf 322899999999883468998386582223101880130733457 Q gi|254780680|r 385 SGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL 429 (430) Q Consensus 385 t~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~ 429 (430) |||||||+|+||||||||+||||+||+||||||||..+|.|++.+ T Consensus 436 T~lAv~R~l~ailEn~q~~dGsv~iP~~L~pymg~~~i~~p~~~p 480 (501) T 1wle_A 436 TGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVP 480 (501) T ss_dssp EEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEECCCSSCC T ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEECCCCCCC T ss_conf 415887899998873648998386781325464996752778887 No 3 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=100.00 E-value=0 Score=1198.35 Aligned_cols=425 Identities=32% Similarity=0.537 Sum_probs=403.3 Q ss_pred CCCHHHHHC--CHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------- Q ss_conf 988447851--99999999984698958-89999999999999999999999999999999998644998---------- Q gi|254780680|r 1 MLDIQWIRQ--NPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL---------- 67 (430) Q Consensus 1 MLDik~IRe--n~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~---------- 67 (430) |||||+||+ ||+.|++++++|+.+.+ +|+|+++|++||++++++|+||+++|.+||+||++++.++. T Consensus 7 MLDikliRe~~n~d~vre~lkkR~~d~dlVD~il~lD~~rR~l~~e~e~Lr~erN~iSK~Ig~~kk~~~~~~d~~~~~~~ 86 (484) T 3lss_A 7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQ 86 (484) T ss_dssp CCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------- T ss_pred ECCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 01189986589869999999874998789999999999999999999999999869999999998468754104454444 Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC-CCCCEEEEEEC Q ss_conf -----------------799999999999998864446666677888774431002258811221135-55402420001 Q gi|254780680|r 68 -----------------SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS-ANENILIRSVG 129 (430) Q Consensus 68 -----------------~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~d-e~dNv~i~~~G 129 (430) .++++|++++++|+++|+.+++++.++++++++++++|||+||++||+|+| |++|++++.|| T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~ele~~l~~lll~IPNiph~~VP~G~dee~~Nv~i~~~g 166 (484) T 3lss_A 87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFG 166 (484) T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEES T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC T ss_conf 43322100000001224469999999999999999999999999999999997289977865788875356718997458 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHHH-HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH Q ss_conf 5656656662112202211731000112-221675301056488999999999998622320320212356202788986 Q gi|254780680|r 130 KKPSAIHLSREHFEIGEALGLMDFDRAT-KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430) Q Consensus 130 ~~~~f~f~~k~H~elge~l~liDfe~a~-kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430) +++.| .+++|||||+.++++||++|+ |+||||||||+|+||+|||||+|||+|+|+ ++||++|+||+|||+++|+| T Consensus 167 ~~~~~--~~k~H~el~e~l~~iD~e~aaskvsGsrf~~lkg~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~g 243 (484) T 3lss_A 167 NTTKR--AKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLV-KRGYTPFYPPFFLNRDVMGE 243 (484) T ss_dssp CTTCC--CSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHHHH T ss_pred CCCCC--CCCCHHHHHHHCCCCCHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHCCC T ss_conf 64666--7765667776558622244223100487489789802588999999999765-16974414863222220376 Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 551422476776431---00023134541145445342059555042088532210788433554343212222102002 Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285 (430) Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE 285 (430) |||+|+|++++|++. +++||||||||||+|||+|++|++++||+||+|+|||||+||||||+|||||||||||+||| T Consensus 244 tG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE 323 (484) T 3lss_A 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIE 323 (484) T ss_dssp HSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEE T ss_pred CCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE T ss_conf 45776520104031026764246224666366666430102322876563018888854434466778705761134489 Q ss_pred EEECCCCC--CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH Q ss_conf 12127865--0145789899999999998410675303780117844340241011010048332375310210076453 Q gi|254780680|r 286 LVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR 363 (430) Q Consensus 286 ~~~~~~pe--~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR 363 (430) ||+||+|+ +|+++|++|+.++++||+.||||||||+|||||||++|+||||||||||||++|+||||||||||||||| T Consensus 324 ~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~~sgdlg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQsrR 403 (484) T 3lss_A 324 QFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQS 403 (484) T ss_dssp EEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHHHC T ss_conf 99984686122289999999999999985487069974058777822334688898866779757787742552376641 Q ss_pred CCCEEECC-----CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC Q ss_conf 26847338-----9984101042004322899999999883468998386582223101880130733457 Q gi|254780680|r 364 MNSRYRDP-----NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL 429 (430) Q Consensus 364 l~iry~~~-----~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~ 429 (430) ||||||+. .+++++||||||||||||||+|+||||||||+|| |+||+||||||||+++|+++..+ T Consensus 404 l~iry~~~~~~~~~~~~~~~~HtlNgt~~A~~R~l~ailEn~q~~dg-~~iP~~L~pym~g~~~i~~~~~~ 473 (484) T 3lss_A 404 VNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENNA 473 (484) T ss_dssp HTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCGGGGGGTTTCCEEECCCC- T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEECCCCCC T ss_conf 40501576555555677504575106300887899888873618997-18880005767997030688888 No 4 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=100.00 E-value=0 Score=1175.29 Aligned_cols=422 Identities=49% Similarity=0.825 Sum_probs=410.7 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 98844785199999999984698958--8999999999999999999999999999999999864499879999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ--SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETS 78 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~--id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~ 78 (430) |||||+||+||+.|++++++||.+++ +|+|++||++||+++.++|+||++||.+||+||++++++++ +++++++++ T Consensus 1 MlDik~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~--~~~l~~~~~ 78 (425) T 2dq3_A 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVK 78 (425) T ss_dssp CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHH T ss_conf 989788876999999999870998255599999999999999999999999999999999999867988--999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHH Q ss_conf 99988644466666778887744310022588112211355540242000156566566621122022117310001122 Q gi|254780680|r 79 TLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATK 158 (430) Q Consensus 79 ~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~k 158 (430) +|+++++.+++++++++++++++++.|||+||++||+|.+|++|++|++||++|.|+|+||||+|||+.+|++||++|+| T Consensus 79 ~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~~g~~~~~~f~~k~H~eig~~l~l~Df~~~~k 158 (425) T 2dq3_A 79 ELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAK 158 (425) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHC T ss_conf 99999999999999999999999972789878888999872256788337888999989884999998739840566642 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHH Q ss_conf 2167530105648899999999999862232032021235620278898655142247677643-100023134541145 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLT 237 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~ 237 (430) +||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|++ ++++||||||||||+ T Consensus 159 vsGsrf~~l~g~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~ 237 (425) T 2dq3_A 159 LSGSRFTVIAGWGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT 237 (425) T ss_dssp HHCSSCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHH T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHH T ss_conf 36776268628599999999999999998-77987743837668999864156742456530126886164144565088 Q ss_pred HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 44534205955504208853221078843355434321222210200212127865014578989999999999841067 Q gi|254780680|r 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 238 ~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) |||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||+||+|++|+++|++|+.++++||++||||| T Consensus 238 ~~~~~~~~~~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L~l~~ 317 (425) T 2dq3_A 238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPY 317 (425) T ss_dssp GGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCE T ss_pred HHHCCEEECHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 77335074175488403453787786655457677751543210023246641733589999999999999999716870 Q ss_pred HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 53037801178443402410110100483323753102100764532684733899841010420043228999999998 Q gi|254780680|r 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 (430) Q Consensus 318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail 397 (430) |||+|||||||++|+|||||||||||+++|+||||||||||||||||||||++.++++.+||||||||||||||+|+||| T Consensus 318 rvv~~~~~dlg~~~~~~~DiE~W~P~~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l~ail 397 (425) T 2dq3_A 318 RVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL 397 (425) T ss_dssp EEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHH T ss_pred EEEEECCCCCCCCCCEEECEEEEECCCCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHH T ss_conf 89996788888764257340777230084788988755255666546887665899951556774776208878999999 Q ss_pred HHCCCCCCCEECCCCCCCCCCCEEEECCC Q ss_conf 83468998386582223101880130733 Q gi|254780680|r 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 (430) Q Consensus 398 En~q~~dg~i~iP~~L~pym~g~~~i~~~ 426 (430) |||||+||+|+||+|||||| |.++|.|+ T Consensus 398 En~q~~dg~v~iP~~L~~y~-g~~~i~p~ 425 (425) T 2dq3_A 398 ENYQQEDGSVVVPEVLRDYV-GTDVIRPE 425 (425) T ss_dssp HHTBCTTSCEECCTTTHHHH-SCSEECCC T ss_pred HHCCCCCCCEECCHHHHHHC-CCCCCCCC T ss_conf 73518998686882214035-99701679 No 5 >1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Probab=100.00 E-value=0 Score=1124.72 Aligned_cols=418 Identities=35% Similarity=0.555 Sum_probs=401.7 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 98844785199999999984698958899999999999999999999999999999999986449987999999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTL 80 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~L 80 (430) |||||+||+|||.|+++|++||.++++|+|++||++||+++.++++||++||++||+||+++ .++.+++++++++| T Consensus 1 MlDik~iR~n~e~v~~~l~~R~~~~dld~ll~Ld~~~r~l~~~~e~l~~~rN~lSK~I~k~k----~~~~~~l~~~~~~l 76 (421) T 1ses_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----PEEKEALIARGKAL 76 (421) T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC----HHHHHHHHHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH T ss_conf 98978887599999999986599706899999999999999999999999999999975325----15489999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHC Q ss_conf 98864446666677888774431002258811221135554024200015656656662112202211731000112221 Q gi|254780680|r 81 KEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLS 160 (430) Q Consensus 81 k~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvs 160 (430) +++++.+++++++++++++++++.|||+||++||+|.+|++| ++++||.+|.|+|++++|||||+.++++|+ +|+|+| T Consensus 77 k~~i~~le~~~~~~~~~l~~~ll~IPNlp~~~VP~G~de~~n-~i~~~~~~~~f~f~~k~H~ei~e~l~~~d~-~aakis 154 (421) T 1ses_A 77 GEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANR-EIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVS 154 (421) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSSSGGGCE-EEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHC T ss_conf 999999886799998877665302221232211124554433-023215775334122106888888654344-455432 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHHHH Q ss_conf 67530105648899999999999862232032021235620278898655142247677643-10002313454114544 Q gi|254780680|r 161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLTNL 239 (430) Q Consensus 161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~~~ 239 (430) |||||||+|+||+|||||+|||+|++. ++||+++.||+|||+++|+||||+|+|++|+|++ ++++||||||||||+|| T Consensus 155 Gsrf~~l~g~~A~LerALi~f~ld~~~-~~gy~e~~~P~lv~~~~~~gtG~lp~f~~d~y~~~~~~l~LipTaEv~l~~~ 233 (421) T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMA-RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL 233 (421) T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHT T ss_pred CCCHHCCCCCEEEEEHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 411100069557751657899998740-0000023331455677775037886531023443113442102466306766 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 534205955504208853221078843355434321222210200212127--865014578989999999999841067 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT--REEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~--~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) |+|++++.++||+||+|+|||||+||||||+|||||||||||+|||||++| .|++|+++|++|+.++++||++|+||| T Consensus 234 ~~~~il~~~~LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~i~~~L~lpy 313 (421) T 1ses_A 234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY 313 (421) T ss_dssp TTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 41555446535732577447532223344521034433102455777786145430246799999999999986226731 Q ss_pred HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 53037801178443402410110100483323753102100764532684733899841010420043228999999998 Q gi|254780680|r 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 (430) Q Consensus 318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail 397 (430) |||++||||||++|++||||||||||+++|+||||||||+||||||++|||++++|+ ++||||||||++|+||+|+||| T Consensus 314 rvv~~~~~dlg~~a~~~~diE~w~P~~~~~~Evss~Sn~~d~qsrrl~i~y~~~~~~-~~~~htlngt~~a~~R~l~ail 392 (421) T 1ses_A 314 RLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGR-VRYAYTLNNTALATPRILAMLL 392 (421) T ss_dssp EEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSC-EEECEEEEEEEEEETHHHHHHH T ss_pred HHHHCCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCHHHHHHCCCEEECCCCC-EEEEEECCCCCCHHHHHHHHHH T ss_conf 102227556775876321407886488967878212020038887615878889998-7866872476037889999999 Q ss_pred HHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 834689983865822231018801307334 Q gi|254780680|r 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 398 En~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) ||||++||+|.||+|||||| |.++|.|.| T Consensus 393 E~~q~~dg~v~iP~~L~~ym-g~~~i~p~g 421 (421) T 1ses_A 393 ENHQLQDGRVRVPQALIPYM-GKEVLEPCG 421 (421) T ss_dssp HHHBCTTSCEECCGGGHHHH-SSSEECCCC T ss_pred HHCCCCCCCEECCHHHHCCC-CCCEEEECC T ss_conf 97358898880881201424-984354087 No 6 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=100.00 E-value=0 Score=1012.08 Aligned_cols=419 Identities=34% Similarity=0.546 Sum_probs=377.0 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH Q ss_conf 98844785199999999984698958899999999999999999999999999999----------------------99 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSA----------------------QI 58 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSK----------------------eI 58 (430) |-|++.+++.+|.+.+.+..+....+.+.++..+++...-+..+. .++....+ .| T Consensus 1 ~~~l~~~~~e~e~~~~~~~e~~~~~e~e~~~~~~e~~~~~~~~i~---~~~~~~~~dL~~a~P~l~~A~~al~~l~k~di 77 (536) T 3err_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIA---DKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHL 77 (536) T ss_dssp --CHHHHHSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 900788777599999999999999999999989999999999999---99999999999835999999999964999789 Q ss_pred HHHHH---------------------------------------------------------------CC---C------ Q ss_conf 99864---------------------------------------------------------------49---9------ Q gi|254780680|r 59 GQAIA---------------------------------------------------------------EG---N------ 66 (430) Q Consensus 59 g~~k~---------------------------------------------------------------~~---~------ 66 (430) .++++ +. + T Consensus 78 ~Elks~~~PP~~V~~v~eaV~illg~~~~~W~~akk~l~~~~Fl~~L~~fdkd~I~~~~i~ki~k~yi~~~~F~~e~i~k 157 (536) T 3err_A 78 VEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNR 157 (536) T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 99972389967999999999999589999989999985735567887646921099999999999755687889999999 Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCC Q ss_conf --------------879999999999999886444666667788877443100225881122113555402420001565 Q gi|254780680|r 67 --------------LSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP 132 (430) Q Consensus 67 --------------~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~ 132 (430) .....++.++++.++++|+.+++++.+++++++++++.|||+||++||+|.+| +|++|++||++| T Consensus 158 ~S~Aa~~L~~WV~A~~~y~~v~k~v~plk~eL~elE~el~e~e~~l~~~ll~lPNi~~~~vP~G~~e-~n~~v~~~g~~~ 236 (536) T 3err_A 158 ASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEE-ANREIKRVGGPP 236 (536) T ss_dssp HCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCSSGG-GCEEEEEESCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEECCCC T ss_conf 8899999999998874499999998766888999998888888999889862258707888999986-786999968988 Q ss_pred CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC Q ss_conf 66566621122022117310001122216753010564889999999999986223203202123562027889865514 Q gi|254780680|r 133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI 212 (430) Q Consensus 133 ~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l 212 (430) .|+|+|++|++||+.+|++| ++|+|+||||||||+|+||+|||||+|||+|++ .++||++++||+|||+++|+||||+ T Consensus 237 ~~~f~pk~H~el~~~l~l~d-~~a~kvsGsrfy~l~g~~A~Le~AL~~f~ld~~-~~~gy~~v~~P~~v~~~~~~gtG~l 314 (536) T 3err_A 237 EFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHF 314 (536) T ss_dssp CCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCT T ss_pred CCCCCCCCHHHHHHHCCCCC-HHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH-HHCCCCHHHCHHHHHHHHHHHHCCC T ss_conf 98999879999963534615-344333178769993859999999999999999-7604502301022246655222478 Q ss_pred HHHHHHHHHH-HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 2247677643-100023134541145445342059555042088532210788433554343212222102002121278 Q gi|254780680|r 213 PKFADDMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR 291 (430) Q Consensus 213 p~f~~~~y~~-~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~ 291 (430) |+|++++|.+ ++++||||||||||+|||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||++|+ T Consensus 315 p~f~~~~y~~~~~~~~LipTaEv~l~~~~~~~i~~~~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~ 394 (536) T 3err_A 315 PAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTE 394 (536) T ss_dssp TTTGGGCCEETTTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEEC T ss_pred CCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECC T ss_conf 53024555420023101566642034454075474865897655469824555565575442133313431489998536 Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE Q ss_conf 6--50145789899999999998410675303780117844340241011010048332375310210076453268473 Q gi|254780680|r 292 E--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR 369 (430) Q Consensus 292 p--e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~ 369 (430) | ++|+.+|++|+.++++||+.|+||||||++||||||++|++||||||||||+++|+||||||||+|||||||||||+ T Consensus 395 ~~~e~s~~~~~~~l~~~e~i~~~L~lpyrvv~~~~~dlg~~a~~kyDiE~w~P~~~~y~Ev~S~Snc~DfqsrRl~iry~ 474 (536) T 3err_A 395 ASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR 474 (536) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCEEEEECCCCCEEEEECHHCHHHHHHHHCCCEEE T ss_conf 51345799999999999999742488559996777768867875245189854879877573110101188885478888 Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 3899841010420043228999999998834689983865822231018801307334 Q gi|254780680|r 370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 370 ~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) +++|+ .+||||||||+||+||+|+|||||||++||+|.||+|||||| |.++|+|.. T Consensus 475 ~~~g~-~~~~htlngt~~a~~R~l~ailEn~q~~dg~i~iP~~L~~y~-~~~~i~p~~ 530 (536) T 3err_A 475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPGA 530 (536) T ss_dssp CTTSC-EEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC- T ss_pred CCCCC-EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHCCC-CCCEECCCC T ss_conf 89998-874688207510888999999996569999884882322424-996545663 No 7 >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Probab=100.00 E-value=0 Score=433.06 Aligned_cols=300 Identities=17% Similarity=0.171 Sum_probs=258.3 Q ss_pred HHCCCCCCCHHHHC----CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHH Q ss_conf 10022588112211----35554024200015656656662112202211731000112221675301056488999999 Q gi|254780680|r 103 SCIPNVPLEEVPIG----TSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 (430) Q Consensus 103 l~IPNi~~~~VP~G----~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~AL 178 (430) -++.|++..++|.. ++|..+ ++... .++.+.|. .+|.+++++++++. +.+|+|++++.+.||+|.||| T Consensus 166 ~ri~~l~~~~~~~~~~~~~~e~~~-~~~e~-~~r~~~~~-~d~~~~~~~~g~i~-----~~~~~G~~~~~p~g~~L~raL 237 (522) T 2cja_A 166 DRILTLLEEKIEAAQYGAKAEHWN-LLWQR-EPMEHPFK-EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTF 237 (522) T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCC-EEEEC-CCCCCCCC-SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHCCCCCHHHHH-HHHHC-CCCCCCCC-CCHHHHHHHCCCCH-----HCCCCCEEEECCHHHHHHHHH T ss_conf 998753023055523555166777-76431-22233112-78899998647600-----147686389866799999999 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH----------------------------------HH Q ss_conf 99999862232032021235620278898655142247677643----------------------------------10 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT----------------------------------TD 224 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~----------------------------------~d 224 (430) .+|++|.+..+.||++|.+|.|++.+++++|||+|.|.++||.+ ++ T Consensus 238 e~~~~e~~~~k~G~~ev~~P~li~~el~~~sGh~~~f~~~m~~V~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~ 317 (522) T 2cja_A 238 EKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEP 317 (522) T ss_dssp HHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCC T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 99999998886398798788633799995478856674643563256655410111221110012334321110114566 Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHH Q ss_conf 00231345411454453420595550420885322-10788433554343212222102002121278650145789899 Q gi|254780680|r 225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAP-SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 (430) Q Consensus 225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~-cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~ 303 (430) +++|.||+|+|++++|+++++++.+||+||+++|+ |||.|+|+ ++||+|||||+|+|++.+|+||++.+++++|+ T Consensus 318 ~y~L~Pt~c~~~~~~~~~~~~s~~dLPlk~~~~s~~~fR~E~g~----~~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l 393 (522) T 2cja_A 318 IGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG----IHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522) T ss_dssp CEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSS----CCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH T ss_pred CEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCC----CCCCCEEEEEEEEEEEEEECHHHHHHHHHHHH T ss_conf 56660577199999971863570002488874040268745778----77550246778643999956888999999999 Q ss_pred HHHHHHHH-HHCCHHHHCCCC---------CHHCCCHHHEEEEEEEECCCC---CCEEEEEEECCCCCHHHHHCCCEEEC Q ss_conf 99999999-841067530378---------011784434024101101004---83323753102100764532684733 Q gi|254780680|r 304 SCAEEILK-RLDLHYRVVSLC---------TGDLGFSACKTYDLEVWLAGQ---NLYREISSCSTCGNFQSRRMNSRYRD 370 (430) Q Consensus 304 ~~~~~i~~-~L~lpyRvv~~~---------sgdlg~~a~~~~DiE~w~P~~---~~y~Ev~S~Snc~D~QsrRl~iry~~ 370 (430) +.+.++|. .|+||||++..+ .+++++++..+||+|+|+|++ ++|.||+||++|+||||+|++|+. T Consensus 394 ~~~~~if~~~L~L~~r~v~~~~~~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~-- 471 (522) T 2cja_A 394 DRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL-- 471 (522) T ss_dssp HHHHHHHHHTSCCCEEEEEC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEE-- T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC-- T ss_conf 999999999709845993256544566555112335621240238854256778871899866264342637309738-- Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEE Q ss_conf 8998410104200432289999999988346899838658222310188013 Q gi|254780680|r 371 PNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAV 422 (430) Q Consensus 371 ~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~ 422 (430) .+ .+++|| +++|+++.|+++|+||+|+...+ ..|+++|+|+|+... T Consensus 472 ~~---~~~v~~-~c~GiGleR~i~alle~~g~d~~--~WP~~i~~~vg~~~~ 517 (522) T 2cja_A 472 QS---GDELWS-GCSGVGLERWAAVFLAQKGLDPA--NWPEEFRNRVGEMPK 517 (522) T ss_dssp TT---CCCEEE-EEEEEEHHHHHHHHHHHHCSCGG--GSCHHHHHHHCSCCC T ss_pred CC---CCEEEE-ECCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCC T ss_conf 99---998999-37672999999999996599999--988699998648561 No 8 >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* Probab=100.00 E-value=0 Score=406.53 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=245.6 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH Q ss_conf 02258811221135554024200015656656662112202211731000112221675301056488999999999998 Q gi|254780680|r 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMID 184 (430) Q Consensus 105 IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld 184 (430) +|+..|..||+.+ ++|.+.+ ..|.++++.++.+|+++|++.+++||+++++.+++||+++.. T Consensus 15 vprgs~~~~~~~~------------~~p~~a~--~~~~~l~~~~~~~~~~~ga~g~y~~~~~~~~v~~~le~~i~~---- 76 (346) T 3mf2_A 15 VPRGSHMNIAVLP------------NSPDTAP--QIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS---- 76 (346) T ss_dssp ------------------------------------CCTTGGGHHHHEEEEEETTEEEEEHHHHHHHHHHHHHHHH---- T ss_pred CCCCCCCCCEECC------------CCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH---- T ss_conf 6578866540137------------8986456--640689999852222216755564289999999999999999---- Q ss_pred HHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----------------------------HCCEECCCCCCHH Q ss_conf 622320320212356202788986551422476776431----------------------------0002313454114 Q gi|254780680|r 185 LHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----------------------------DGRWLIPTSEVSL 236 (430) Q Consensus 185 ~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----------------------------d~l~Li~TaEvpL 236 (430) + .++||+++..|.+++.+.+++||++++|.+++|.+. .+++|+||+|+++ T Consensus 77 -~-~~~G~~~v~~P~l~~~e~~~~sg~~~~f~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Pt~c~~i 154 (346) T 3mf2_A 77 -H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPV 154 (346) T ss_dssp -T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSSSTTH T ss_pred -H-HHCCCEEEECCCEECHHHHHHCCCHHHCHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHH T ss_conf -9-97798698688543499997548621043340684136775201222110012344311134776568707871888 Q ss_pred HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 54453420595550420885322107884335543432122221020021212786501457898999999999984106 Q gi|254780680|r 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) ++++++++. ..+||++|+.+|+|||.|++ +||+|+|||+++|++.||+|+++.++++++++.++++|+.|||| T Consensus 155 ~~~~~~~~~-~~dlP~~~~~~~~~fR~E~~------~Gl~R~reF~~~E~~~f~~~e~~~~~~~~~~~~~~~i~~~LgL~ 227 (346) T 3mf2_A 155 YPIAASRGP-LPKGGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT 227 (346) T ss_dssp HHHHHTTCS-CCTTCEEEEEEEEEECCCCC------SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHCCCCC-CCCCCEEEEEECCEEECCCC------CCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999725735-51348799997478837899------99932377899999999858999999999999999999987997 Q ss_pred HHHCCCCC---HHCCCHHHE-------EEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCH Q ss_conf 75303780---117844340-------24101101004833237531021007645326847338998410104200432 Q gi|254780680|r 317 YRVVSLCT---GDLGFSACK-------TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSG 386 (430) Q Consensus 317 yRvv~~~s---gdlg~~a~~-------~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~ 386 (430) ||++..|+ ||+|..+.+ +||+|+|+|++++|.||+|++||+||||+|++|+|.+. +++|| +..| T Consensus 228 ~~~~~a~d~~~gd~g~~~~~~~~~~~~k~d~e~~~p~~~~~~evgsi~~~gd~~~~r~~i~~~d~-----~~~h~-~~~G 301 (346) T 3mf2_A 228 FRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANG-----EPAHT-GCVA 301 (346) T ss_dssp CEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCBCTTS-----SBCEE-EEEE T ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEECC-----CEEEE-CCCC T ss_conf 69998258888744148776332203247999980899977888316414775673359888189-----97887-6774 Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEC Q ss_conf 28999999998834689983865822231018801307 Q gi|254780680|r 387 VAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIK 424 (430) Q Consensus 387 ~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~ 424 (430) +++.|+++||||+|+.+.+ .-|+..|.+++-...+. T Consensus 302 ~g~eR~v~aliE~h~~~~~--~Wp~~vr~~l~l~P~~a 337 (346) T 3mf2_A 302 FGMDRLAVAMFHTHGTDLS--AWPAKVRDILGLQPHVA 337 (346) T ss_dssp EEHHHHHHHHHHHHCSCGG--GSCHHHHHHTTSCCC-- T ss_pred CHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCCCC T ss_conf 6599999999996799989--88588887742785333 No 9 >1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Probab=100.00 E-value=3.1e-35 Score=280.96 Aligned_cols=293 Identities=18% Similarity=0.232 Sum_probs=251.6 Q ss_pred HHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHH Q ss_conf 10022588112211355540242000156566566621122022117310001122216753010564889999999999 Q gi|254780680|r 103 SCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFM 182 (430) Q Consensus 103 l~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ 182 (430) -.+||.+|-..|.++.+. +..|++.. +|. .=+.+|.++.+|+|+..+++ |++++...|+++.++|.+|+ T Consensus 13 ~~~~~~~~~~~~~~~~~~-----r~~~~~~~-~f~-~w~~~~~~~a~l~d~~~~vk----G~~~~lP~G~~i~~~i~~~~ 81 (501) T 1nj1_A 13 GLVPRGSHMQKPIKKDPN-----RYHGEKMT-EFS-EWFHNILEEAEIIDQRYPVK----GMHVWMPHGFMIRKNTLKIL 81 (501) T ss_dssp --------------------------------CHH-HHHHHHHHHTTCEECCCSST----TCCEECHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCC-----CCCCCCHH-HHH-HHHHHHHHHCCCCCCCCCCC----EEEEECCCHHHHHHHHHHHH T ss_conf 406688743455566755-----35577455-516-99999999708823389997----15997703999999999999 Q ss_pred HHHHHHHCCCCEEHHHHHCCHH-HHHHHHHCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCE Q ss_conf 9862232032021235620278-8986551422476776431--------000231345411454453420595550420 Q gi|254780680|r 183 IDLHTSEHGYTEVSAPLLVRDE-AMYGTGQIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLR 253 (430) Q Consensus 183 ld~~~~~~Gy~~v~~P~lv~~~-~~~gtG~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik 253 (430) -+. . ++||.+|.+|.++..+ ....+|+++.|.++||.+. ++++|.||+|.+++.+|++.+..+.+||+| T Consensus 82 r~~-~-~~G~~ev~tP~l~~~~~L~~~SGh~~~f~eemf~v~~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~SyrdLPlr 159 (501) T 1nj1_A 82 RRI-L-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMR 159 (501) T ss_dssp HHH-H-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEE T ss_pred HHH-H-HCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEE T ss_conf 999-9-85998997886405789866645655446477278416754567606871378888999996320136679868 Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE--EECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHH Q ss_conf 885322107884335543432122221020021--212786501457898999999999984106753037801178443 Q gi|254780680|r 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL--VSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSA 331 (430) Q Consensus 254 ~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~--~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a 331 (430) ++.+++|||.|.+. ++||+|++||+.++. +..|+|+++++++..|+....++|+.|++||++...+.+|....+ T Consensus 160 i~q~g~~fR~E~~~----~~gllR~REF~q~ed~~~~~~~~e~~~~e~~~~~~~y~~~~~~l~i~~~~~~~~~~d~~~ga 235 (501) T 1nj1_A 160 FYQVVNTFRYETKH----TRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGS 235 (501) T ss_dssp EEEEEEEECCCCSC----CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTC T ss_pred EEEECHHHCCCCCC----CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC T ss_conf 88762121254001----57706999999850003467998999999999999999998641513011012465545562 Q ss_pred HEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCC Q ss_conf 40241011010048332375310210076453268473389984101042004322899999999883468998386582 Q gi|254780680|r 332 CKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPT 411 (430) Q Consensus 332 ~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~ 411 (430) ..++++|+|+|. +...|++++.++++..+++.++.|.+.+|+ ..++|+..- -...|++.+++|.|...+| ..+|- T Consensus 236 ~~~~~~e~~~~~-G~~iev~t~~~Lg~~~s~~f~i~y~d~~g~-~~~v~~~~~--G~~~R~i~~lie~~~d~~g-l~lP~ 310 (501) T 1nj1_A 236 EYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETPEGD-HEYVHQTCY--GLSDRVIASVIAIHGDESG-LCLPP 310 (501) T ss_dssp SEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECTTSC-EEECEEEEE--EECTHHHHHHHHHTCCSSS-EECCT T ss_pred HHHCCHHHHHCC-CCCEEEECEECCCCHHHHHCCCCCCCCCCC-CEEEECCCH--HHHHHHHHHHHHHHHHCCC-CEECC T ss_conf 320000122203-760157330105545767503430245686-302201101--2544364787766213038-53262 Q ss_pred CCCCCC Q ss_conf 223101 Q gi|254780680|r 412 VLRPYM 417 (430) Q Consensus 412 ~L~pym 417 (430) .|-|+= T Consensus 311 ~lAP~q 316 (501) T 1nj1_A 311 DVAAHQ 316 (501) T ss_dssp TTSSCS T ss_pred CCCCEE T ss_conf 117614 No 10 >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Probab=99.93 E-value=2.4e-25 Score=207.44 Aligned_cols=264 Identities=17% Similarity=0.208 Sum_probs=230.0 Q ss_pred CCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCHHHH Q ss_conf 112--202211731000112221675301056488999999999998622320320212356202788986-55142247 Q gi|254780680|r 140 EHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIPKFA 216 (430) Q Consensus 140 ~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp~f~ 216 (430) +.| ++..+-+|+|....+ +|+|++.-.|.++-+.|++|+-+. ..+.||.+|..|.|+..+.+.. +|++..|. T Consensus 25 ~~wy~~v~~~a~l~d~~~~v----~G~~~~lP~G~~i~~~i~~~~~~~-~~~~G~~ev~~P~l~p~~~l~k~sgh~e~f~ 99 (518) T 3ial_A 25 ADWFDAIMDAAELVDRRYPV----KGCVVFRPYGFFMENAIMRLCEEE-YAKVGISQILFPTVIPESFLKKESDHIKGFE 99 (518) T ss_dssp HHHHHHHHHHTTCEETTSSS----TTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHTSSHHHHHHHG T ss_pred HHHHHHHHHHCCCCCCCCCC----CCCEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHHCCCCCCC T ss_conf 89999999964770148999----801897710999999999999999-9985997998976067899998867701026 Q ss_pred HHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE Q ss_conf 6776431--------00023134541145445342059555042088532210788433554343212222102002121 Q gi|254780680|r 217 DDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS 288 (430) Q Consensus 217 ~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~ 288 (430) ++||.++ +.++|-||+|..++.++++.+-++.+||+++.-+++|||-|.. .++||+|+.+|..-|+.. T Consensus 100 ~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~i~SyrdLPl~i~Q~g~~fR~E~~----~~~gllR~REF~~~E~ht 175 (518) T 3ial_A 100 AECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETK----NTKPLIRVREIHWNEAHC 175 (518) T ss_dssp GGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCC----SCBTTTBCSEEEEEEEEE T ss_pred CCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC----CCCCEEHHHEEEHHHCCC T ss_conf 3446984488655566177635887999999954457655568144553101012234----564000202142642313 Q ss_pred CC-CCCCHHHHHHHHHHHHHHHH-HHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC Q ss_conf 27-86501457898999999999-98410675303780117844340241011010048332375310210076453268 Q gi|254780680|r 289 IT-REEDSFTEHERMLSCAEEIL-KRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS 366 (430) Q Consensus 289 ~~-~pe~S~~~~e~~~~~~~~i~-~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i 366 (430) ++ +.+++..+..+++.....++ ..|.+|+....-...+-.+.+..++++|+++|. +...+++++-..+.--|++.++ T Consensus 176 ~~~~~eea~~~~~~~~~~y~~~~~~~l~i~~~~~~~~~~~k~~~a~y~~~iE~~~~~-g~~~q~gtt~~Lg~~fsk~f~i 254 (518) T 3ial_A 176 CHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGIHNLGQRFSSTFDI 254 (518) T ss_dssp EESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCCCCCCHHHHHHHH-CCCCCCCCEEECCCCCCCCCEE T ss_conf 214788887665555677776431112132001113378754895233117788763-3673410178551105633226 Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 473389984101042004322899999999883468998386582223101 Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) .|.+++++. +++|+... |+ +.|+|.|++|.|...+| ++.|..|-||= T Consensus 255 ~y~d~~g~~-~~~~~~s~-Gi-~~Rli~alie~~~D~~g-l~lP~~lAP~q 301 (518) T 3ial_A 255 LYANKANES-VHPYLTCA-GI-STRVLACALSIHGDSGG-LVLPPLIAPIH 301 (518) T ss_dssp CEECTTCCE-ECCEEEEE-EE-ETHHHHHHHHHHCBTTB-CCCCGGGCSCS T ss_pred EEECCCCCE-EEEEEEEC-CH-HHHHHHHHHHHHHHCCC-CCCCCCCCCCE T ss_conf 999899967-54321102-21-46799999997510268-75786727876 No 11 >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Probab=99.92 E-value=8.8e-25 Score=203.28 Aligned_cols=267 Identities=20% Similarity=0.214 Sum_probs=230.9 Q ss_pred CCCCCCCCCCCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH Q ss_conf 656656662112--202211731000112221675301056488999999999998622320320212356202788986 Q gi|254780680|r 131 KPSAIHLSREHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430) Q Consensus 131 ~~~f~f~~k~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430) +++.+| +.| +|..+-+++|.. .| +|+|++.-.|.++-+.|.+|+-+. ..+.||.+|.+|.++..+.+.. T Consensus 9 ~~~~~f---~~wy~~~~~~a~l~d~~---~i--~G~~~~lP~G~~i~~~i~~~i~~~-~~~~G~~ev~~P~li~~~~l~k 79 (477) T 1hc7_A 9 PQSQDF---SEWYLEVIQKAELADYG---PV--RGTIVVRPYGYAIWENIQQVLDRM-FKETGHQNAYFPLFIPMSFLRK 79 (477) T ss_dssp CHHHHH---HHHHHHHHHHTTSEEEC---SS--TTCEEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEESTTC-- T ss_pred CCCCCC---HHHHHHHHHHCCCCCCC---CC--CCEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHH T ss_conf 853361---48999999970774147---88--962888855999999999999999-9985997998966157899998 Q ss_pred -HHHCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf -551422476776431--------00023134541145445342059555042088532210788433554343212222 Q gi|254780680|r 209 -TGQIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH 279 (430) Q Consensus 209 -tG~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH 279 (430) .|++..|.++||.+. +.++|-||+|...+.+|++.+.++.+||+|+..+++|||-|.- ++|++|+- T Consensus 80 ~sgh~~~f~~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~-----~~gllR~R 154 (477) T 1hc7_A 80 EAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-----TRPFLRTS 154 (477) T ss_dssp -------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-----CBTTTBCS T ss_pred HHCCHHHCCCCEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCEECCCC-----CCCCCEEE T ss_conf 8676413175607885168411024314689766889999962355202488888615301000246-----77753489 Q ss_pred EEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-HHCCCHHHEEEEEEEECCCCCCEEEEEEECCCC Q ss_conf 102002121-278650145789899999999998410675303780-117844340241011010048332375310210 Q gi|254780680|r 280 QFWKCELVS-ITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCT-GDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 (430) Q Consensus 280 QF~KVE~~~-~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~s-gdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~ 357 (430) +|.--|... +|+++++.++++.+++....++..|..++.++-..+ .+-++.+..++++|+.+|. ++..+++.+.+++ T Consensus 155 eF~~~D~ht~~~t~e~a~~~~~~~~~~y~~~~~~~~~~~~~~g~~~~~e~~~ga~~~~~ie~~~~~-Gr~~q~gt~~~lg 233 (477) T 1hc7_A 155 EFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLG 233 (477) T ss_dssp EEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTT-SCEEEEEEEEEEE T ss_pred EEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHC-CHHHHCCCEEECC T ss_conf 998751244422388889999999999999976431111120565455454463434134676644-5044327333034 Q ss_pred CHHHHHCCCEEECCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 07645326847338998410104200-4322899999999883468998386582223101 Q gi|254780680|r 358 NFQSRRMNSRYRDPNSKSLKFTHTLN-GSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 358 D~QsrRl~iry~~~~~~~~~~~htlN-gt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) .-.|++.++.|.+++|+ .+++|+-. |++ .|+|+|++|.|-..+| ++.|..|-|+= T Consensus 234 ~~fs~~f~i~y~d~~g~-~~~~~~~~~Gi~---~R~i~alie~h~d~~G-l~lP~~lAP~Q 289 (477) T 1hc7_A 234 ENFARAFDIKFQDRDLQ-VKYVHTTSWGLS---WRFIGAIIMTHGDDRG-LVLPPRLAPIQ 289 (477) T ss_dssp THHHHHTTCEEECTTSC-EEECEEEEEEEE---THHHHHHHHHHCBTTB-CCCCTTTCSCS T ss_pred CCHHHHCCCEEECCCCC-EEEEEEEECCCC---HHHHHHHHHHHCCCCC-CCCCHHCCCCE T ss_conf 30456526556435784-333566640441---6789999998326767-42480028405 No 12 >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Probab=99.92 E-value=4.6e-24 Score=197.96 Aligned_cols=264 Identities=17% Similarity=0.240 Sum_probs=230.4 Q ss_pred CCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH-HCHHHH Q ss_conf 112--20221173100011222167530105648899999999999862232032021235620278898655-142247 Q gi|254780680|r 140 EHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG-QIPKFA 216 (430) Q Consensus 140 ~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG-~lp~f~ 216 (430) +.| +|.++-+|+|+...+ +|++++.-.|+++-+.+.+++-+. ..+.||.+|.+|.+++.+.+..+| ++..|. T Consensus 8 ~~wy~~~~~~a~l~~~~~~v----kG~~~~lP~G~~i~~~ie~~~r~~-~~~~G~~ei~tP~l~~~~l~~k~~~h~d~f~ 82 (459) T 1nj8_A 8 SEWYSDILEKAEIYDVRYPI----KGCGVYLPYGFKIRRYTFEIIRNL-LDESGHDEALFPMLIPEDLLAKEAEHIKGFE 82 (459) T ss_dssp HHHHHHHHHHTSSCBCCSTT----SSCCBBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHCSSSGGGG T ss_pred HHHHHHHHHHCCCCCCCCCC----CCCEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCC T ss_conf 78899999975981058999----971788845999999999999999-9985998998985378899987416724137 Q ss_pred HHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEE Q ss_conf 6776431--------000231345411454453420595550420885322107884335543432122221020--021 Q gi|254780680|r 217 DDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CEL 286 (430) Q Consensus 217 ~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~ 286 (430) ++||.+. +.+.|-||+|.+++.+|.+.+..+.+||+|+.-+++|||.|.. .++|++|+.||.. ++- T Consensus 83 ~Em~~v~~~g~~~~~~~~~LrPt~e~~~~~~~~~~~~s~rdLPlrl~q~g~~fR~E~~----~~~~~lR~rEF~q~~~~h 158 (459) T 1nj8_A 83 DEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK----HTRPLIRLREIMTFKEAH 158 (459) T ss_dssp GGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS----CCBTTTBCSBCSCEEEEE T ss_pred CCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCC----CCCCCEEEEEEEEECEEE T ss_conf 4637883278655576231117996899999986513225567189850412555332----356676999997512367 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC Q ss_conf 21278650145789899999999998410675303780117844340241011010048332375310210076453268 Q gi|254780680|r 287 VSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS 366 (430) Q Consensus 287 ~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i 366 (430) +..+++++..+....|++....++..+.+||.+..-+..+....+..+++++.++|.. .-.++.++.+.++..+++.+| T Consensus 159 ~~~~~~~e~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~~~q~~t~~~lg~~~~~~~~i 237 (459) T 1nj8_A 159 TAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDG-RTMQIATVHNLGQNFSKTFEI 237 (459) T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTTS-CEEEEEEEEEEETHHHHHTTC T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCCCCHHHCC-CCEEEEEEEECCCCCCCCCCE T ss_conf 7518817899999999999999985244341320001223345303310111111136-640563155146521300134 Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 473389984101042004322899999999883468998386582223101 Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) .|.+.+++ .+++|...- ++ ..|++.++++.|....| .++|.-+-|+- T Consensus 238 ~~~~~~~~-~~~~~~~s~-gi-~~rli~~~i~~~~d~~G-l~lpp~iap~q 284 (459) T 1nj8_A 238 IFETPTGD-KDYAYQTCY-GI-SDRVIASIIAIHGDEKG-LILPPIVAPIQ 284 (459) T ss_dssp EEECTTSS-EEECEEEEE-EE-CTHHHHHHHHHHCBTTB-CCCCTTSCSSS T ss_pred EEECCCCC-CCCEEECCC-CH-HHHHHHHHHHHHHHHCC-CCCCCCCCCCC T ss_conf 53045787-444121131-12-23677788987654316-51233335663 No 13 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Probab=99.91 E-value=9.9e-25 Score=202.89 Aligned_cols=264 Identities=20% Similarity=0.293 Sum_probs=217.2 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) -+||-.||+.++|+.|.. -+|+|+|++.-.|+++-+.|.+|+-+. ..+.||.+|.+|.+.+.+....+|++.++.+ T Consensus 240 ~rdhr~lg~~~~lf~f~~---~~~~G~~~wlP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~~Lw~~SGh~~~y~~ 315 (645) T 1nyr_A 240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDK-EVSMGYDHVYTPVLANVDLYKTSGHWDHYQE 315 (645) T ss_dssp HTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHH-HHHTTEEECBCCSEEETHHHHHHTHHHHCTT T ss_pred HCCHHHHHHHCCCEECCC---CCCCCEEEEHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCCCCHHHHHCCCCCCEECC T ss_conf 455666665225477565---358960773332899999999999999-9860854621642146556531566341114 Q ss_pred HHHHH-----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 77643-----1000231345411454453420595550420885322107884335543432122221020021212786 Q gi|254780680|r 218 DMFCT-----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292 (430) Q Consensus 218 ~~y~~-----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p 292 (430) .+|.. ++.++|-||+|-+.+.+|+..+..+.+||+|++-+++|||.|.- |+ ..||.|+.+|..-++..||++ T Consensus 316 ~m~~~~~~~~~e~~~LrP~~~~~~~~~~~~~~~SyrdLPlrl~qig~~fR~E~~--~~-~~gl~R~ReF~q~d~h~F~~~ 392 (645) T 1nyr_A 316 DMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS--GA-VSGLQRVRGMTLNDSHIFVRP 392 (645) T ss_dssp SSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT--TT-CBTTTBCSEEEEEEEEEEECG T ss_pred CEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC--CC-CCCCCCEEEEEECCCEEEECH T ss_conf 202566416664240456564314577775320345688642454004446654--45-666551234897263587070 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCC---------------------------- Q ss_conf 5014578989999999999841067530378011784434024101101004---------------------------- Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ---------------------------- 344 (430) Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~---------------------------- 344 (430) +++.++..+++....++|+.||+.+..+.+.+++-+.++..-.+-+.|--.. T Consensus 393 ~q~~~e~~~~~~~~~~vy~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~k~ 472 (645) T 1nyr_A 393 DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL 472 (645) T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC T ss_conf 77999999999999999999689734778741689871220462677789999888889863975121246110147752 Q ss_pred -------CCEEEEEEECCCCCHHHHHCCCEEECCCCCCCC--EEEE-ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC Q ss_conf -------833237531021007645326847338998410--1042-004322899999999883468998386582223 Q gi|254780680|r 345 -------NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK--FTHT-LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 345 -------~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~--~~ht-lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430) ..-.+..+.-......+.|.++.|.+.++.+.. .+|. +-| .+.|++++++|.+. .+.|-.|- T Consensus 473 ~~~~~~~~~~~~~~~t~qld~~~~~~f~l~y~~~~~~~~~p~~i~~gi~G---~ieR~ia~liE~~~-----g~lP~~LA 544 (645) T 1nyr_A 473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLTEETK-----GAFPTWLA 544 (645) T ss_dssp EEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHT-----TCCCTTTC T ss_pred CCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCC---HHHHHHHHHHHHCC-----CCCCCCCC T ss_conf 00010015871001110012357732125897044113425401343310---89999999735318-----86898728 Q ss_pred CC Q ss_conf 10 Q gi|254780680|r 415 PY 416 (430) Q Consensus 415 py 416 (430) || T Consensus 545 P~ 546 (645) T 1nyr_A 545 PK 546 (645) T ss_dssp SS T ss_pred CC T ss_conf 85 No 14 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Probab=99.91 E-value=1.5e-23 Score=194.09 Aligned_cols=264 Identities=19% Similarity=0.259 Sum_probs=215.0 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) -+||-.||+.++|+.|..- |+|+|++.-.|.++-+.|.+++-+. ..+.||.+|.+|.+.+.+...-+|++..+.+ T Consensus 241 ~rdhr~lg~~~~lf~~~~~----~~G~~~~lP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~eLw~~sg~~d~~~e 315 (642) T 1qf6_A 241 KRDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315 (642) T ss_dssp TTCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEETHHHHHHSHHHHHGG T ss_pred HHHHHHHHHHHHHHEECCC----CCCEEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCC T ss_conf 6407889987578603367----8825887720999999999999999-9976989986254676567754762222233 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) .+|... ++++|-||.|.+.+.+|++.+..+.+||+|+.-+++|||-|.- | ...||.|+-+|..-+..+||++++ T Consensus 316 ~m~~~~~~~~~~~L~P~~e~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~--~-~~~Gl~R~ReF~q~Da~~f~~~~~ 392 (642) T 1qf6_A 316 AMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ 392 (642) T ss_dssp GCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG--G-GCBTTTBCSEEEEEEEEEEECGGG T ss_pred CEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC--C-CCCCCCCCCCCEECCEEEEECCHH T ss_conf 0787622564256547886179999985012324478589997233368867--5-654532011202545479955624 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-------------------------------HHEEEEEEEECCC Q ss_conf 145789899999999998410675303780117844-------------------------------3402410110100 Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-------------------------------ACKTYDLEVWLAG 343 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-------------------------------a~~~~DiE~w~P~ 343 (430) +.++..+++....++|+.||+++-.|.++++..+.. +.....||+.++- T Consensus 393 ~~~e~~~~~~~~~~i~~~~Gl~~~~v~lst~~e~~~gs~e~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~gpkid~~~~d 472 (642) T 1qf6_A 393 IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYD 472 (642) T ss_dssp HHHHHHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECC T ss_conf 59999999999999999819955899952587666787889999889999999966997124146544468760368604 Q ss_pred -CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC Q ss_conf -48332375310210076453268473389984101042004322-89999999988346899838658222310 Q gi|254780680|r 344 -QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY 416 (430) Q Consensus 344 -~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py 416 (430) .++..+++-+- ...-.+.|.++.|.+.+|.+ +.+.++..+.. .+.|++++++|++ | .+.|..|-|| T Consensus 473 ~~gr~~~~~tiq-ld~~~~~~~~~~y~~~~g~~-~~~~~i~~~~~G~ieR~ia~liE~~----g-~~~P~~lAP~ 540 (642) T 1qf6_A 473 CLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEF----A-GFFPTWLAPV 540 (642) T ss_dssp TTCCEEEEEEEE-EESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHH----T-TCCCTTTCSS T ss_pred CCCCCEEEEEEE-EECCCCCCCCCEEECCCCCC-CCCEEEEECCCCHHHHHHHHHHHHC----C-CCCCCCCCCC T ss_conf 667402652698-65355531320134554453-0355774166418999999999861----8-9589875873 No 15 >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Probab=99.85 E-value=2e-20 Score=170.91 Aligned_cols=263 Identities=17% Similarity=0.239 Sum_probs=203.1 Q ss_pred CCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHH Q ss_conf 21122022117310001122216753010564889999999999986223203202123562027889865514224767 Q gi|254780680|r 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADD 218 (430) Q Consensus 139 k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~ 218 (430) +||+.||+.++|++|... |+|+|.+.-.|.++-+.|.+++-+. ..+.||.+|.+|.|.+.++.+.+|++..|.++ T Consensus 1 ~~h~~lg~~~~l~~~~~~----~~G~~~~lP~G~~l~~~Ie~~~r~~-~~~~G~~EI~tPil~~~eL~~~SG~~d~~~~e 75 (401) T 1evl_A 1 RDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA 75 (401) T ss_dssp CCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHTHHHHSGGG T ss_pred CCHHHHHHHCCCCCCCCC----CCEEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCCC T ss_conf 977787765658445787----8733688738999999999999999-99859979989851887898772770214632 Q ss_pred HHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCH Q ss_conf 76431---000231345411454453420595550420885322107884335543432122221020021212786501 Q gi|254780680|r 219 MFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDS 295 (430) Q Consensus 219 ~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S 295 (430) ||... .+.+|-||.|.+.+.++++......+||+++.-+++|||.|.-. ...|+.|..+|..-+..+++.++++ T Consensus 76 mf~~~~~~~~~~l~p~~e~~~~~~~~~~~~s~~~lP~~~yqig~~fR~E~~~---~~~~~~r~Ref~~~~~~~~~~~~~~ 152 (401) T 1evl_A 76 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG---SLHGLMRVRGFTQDDAHIFCTEEQI 152 (401) T ss_dssp CCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGG---GCBTTTBCSEEEEEEEEEEECGGGH T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCEEEECCCHH T ss_conf 0664045510014777771386898631300245682330360169356555---6577652366787033477346113 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC---------------------------------HHHEEEEEEEECC Q ss_conf 4578989999999999841067530378011784---------------------------------4340241011010 Q gi|254780680|r 296 FTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF---------------------------------SACKTYDLEVWLA 342 (430) Q Consensus 296 ~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~---------------------------------~a~~~~DiE~w~P 342 (430) .....+.+.....++..|++++-.+.+.++..+. ....++|+....+ T Consensus 153 ~~~~~e~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 232 (401) T 1evl_A 153 RDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC 232 (401) T ss_dssp HHHHHHHHHHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECT T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECC T ss_conf 99999999999999997698369999725876667888999998899999998659970102463223677556786047 Q ss_pred CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHH-HHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 0483323753102100764532684733899841010420043228-99999999883468998386582223101 Q gi|254780680|r 343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVA-VGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 343 ~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A-~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) .. +..+.+ .......-+.|.+.+|-+..+.. ..+-.+..+++. +.|+++++.++|. .+.|..+-|+- T Consensus 233 ~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~a~l~~~~g-----~~~p~~iap~~ 300 (401) T 1evl_A 233 LD-RAWQCG-TVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEFA-----GFFPTWLAPVQ 300 (401) T ss_dssp TC-CEEEEE-EEEEESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHHT-----TCCCTTTCSSC T ss_pred CC-CEEEEE-EEEEECCCCCCCCCEEECCCCCC-EEEEEEEECEECHHHHHHHHHHHHCC-----CCCCCCCCCCE T ss_conf 78-625764-69883355642330477576660-35289995707378899999999659-----96576533100 No 16 >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Probab=99.81 E-value=4e-19 Score=161.22 Aligned_cols=256 Identities=19% Similarity=0.241 Sum_probs=212.1 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCC Q ss_conf 21675301056488999999999998622320320212356202788986551422476776431----00023134541 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEV 234 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv 234 (430) -+++|+|.+--.|+++-+.+.+++-+. ..+.||.+|.+|.|...++...+|++..|.++||... .++.|-||.|- T Consensus 54 ~~~~G~y~~lPlG~~v~~kIe~~ir~~-~~~~G~~EI~tP~l~~~eLw~~Sg~~d~~~~em~~~~dr~~r~~~l~p~~~~ 132 (458) T 2i4l_A 54 QEAAGIYAWLPLGHRVLKKIEQIVREE-QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEE 132 (458) T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHH T ss_pred CCCCCCEEECHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCCEEECCCCCCC T ss_conf 068865078810899999999999999-9986998998887387689876177100462112110124200002667870 Q ss_pred HHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHH Q ss_conf 14544534205955504208853221078843355434321222210200212127865-01457898999999999984 Q gi|254780680|r 235 SLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE-DSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 235 pL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe-~S~~~~e~~~~~~~~i~~~L 313 (430) +.+.++..++..+.+||+++.-+++|||.|.... .|+.|++||..-+..+|+.++ +....++.|......++..+ T Consensus 133 ~~~~~~~~~~~sy~~lP~~lyqi~~~fR~E~~~~----~gl~r~ref~~~d~~sf~~~~~~~~~~~~~~~~~y~~i~~~~ 208 (458) T 2i4l_A 133 MITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPR----FGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM 208 (458) T ss_dssp HHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCB----TGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCCCCCCCEECCCEEECCCCCCC----CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5658987633443226854000545764546775----344378997874155555228889999999999999999974 Q ss_pred CCHHHHCCCCCHHCCCHHHEEEEEEE--------------E--CC----------------------------------- Q ss_conf 10675303780117844340241011--------------0--10----------------------------------- Q gi|254780680|r 314 DLHYRVVSLCTGDLGFSACKTYDLEV--------------W--LA----------------------------------- 342 (430) Q Consensus 314 ~lpyRvv~~~sgdlg~~a~~~~DiE~--------------w--~P----------------------------------- 342 (430) +|+++.|...+|.+|...+..|...+ + .| T Consensus 209 ~l~~~~v~~~~~~~g~~~s~Ef~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (458) T 2i4l_A 209 GLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYES 288 (458) T ss_dssp TCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHH T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCHHHCCC T ss_conf 98426787336777765349999876443556666544435678873444344443114445553032233122000241 Q ss_pred -------CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC Q ss_conf -------0483323753102100764532684733899841010420043228999999998834689983865822231 Q gi|254780680|r 343 -------GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRP 415 (430) Q Consensus 343 -------~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~p 415 (430) ...+-.|+...-.+++.-|..++.+|.+..|+. +.+|.- +.++-+.|+++|++|.+-.+.| +..|..+-| T Consensus 289 ~~~~~~~~~~rgie~g~~f~lg~~~s~~~~~~~~~~~g~~-~~~~~g-~~giGieRli~~~~e~~~d~~g-l~~p~~lAP 365 (458) T 2i4l_A 289 EVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTD-APIHGG-SYGVGVSRLLGAIIEACHDDNG-IIWPEAVAP 365 (458) T ss_dssp HSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCE-EECEEE-EEEEEHHHHHHHHHHHSEETTE-ECCCTTTCS T ss_pred CCCHHHHCCCEEEEECCCEECCCCCHHHCCCEEECCCCCE-EEEEEE-ECCCCHHHHHHHHHHHHCCCCC-CCCCCCCCC T ss_conf 3661330574279972714327411121485465578977-768999-6267347888877775157665-212455677 Q ss_pred CCCCEEEEC Q ss_conf 018801307 Q gi|254780680|r 416 YMNNLAVIK 424 (430) Q Consensus 416 ym~g~~~i~ 424 (430) |= ..+|+ T Consensus 366 ~~--v~Iip 372 (458) T 2i4l_A 366 FR--VTILN 372 (458) T ss_dssp CS--EEEEE T ss_pred CE--EEEEE T ss_conf 65--99996 No 17 >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Probab=99.78 E-value=7.1e-19 Score=159.38 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=175.9 Q ss_pred CCCCCCHHHHCCCCCH------HHH---HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH Q ss_conf 6211220221173100------011---2221675301056488999999999998622320320212356202788986 Q gi|254780680|r 138 SREHFEIGEALGLMDF------DRA---TKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430) Q Consensus 138 ~k~H~elge~l~liDf------e~a---~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430) -|+|+++++.|++... ..+ +..+|+|.|++.-.|+++-+.|.+|+-+.+ .+.||.+|.+|.|.+.+.... T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~wlP~G~~v~~~ie~~ire~~-~~~G~~EV~tP~l~~~eLw~~ 84 (471) T 3a32_A 6 DKTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFH-ARRGYYVVETPIIASTELFKV 84 (471) T ss_dssp -CCHHHHHHHTTSBCCTTSBCTTTCSBTHHHHCTTCCCBCTTHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCEECCHHHHHH T ss_conf 6689999997775347521112023446746448621371787999999999999999-986997998980677779877 Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHC---CCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 551422476776431---000231345411454453420---59555042088532210788433554343212222102 Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEI---IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFW 282 (430) Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~---l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~ 282 (430) +|++..|.++||..+ .+++|-||.+-+.+-+|.+.+ .++.+||+++.-+++|||-|... -.-||+|+.+|. T Consensus 85 SGh~d~~~e~Mf~~d~~~~e~~LrP~~~~~~~~~~~~~~~~~~Syk~LPlrlyqi~~~fR~E~~~---~r~gl~R~ReF~ 161 (471) T 3a32_A 85 SGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG---SIYGLLRVRGFT 161 (471) T ss_dssp TCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG---GCBTTTBCSEEE T ss_pred HCCHHHHCCCCEEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECEEEECCCC---CCCCEEEEEEEE T ss_conf 27753421266038508947975466870153675412413365335854687640458602256---742178876578 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHH---HCCHHHHCCCCCH----------HCC--------------------- Q ss_conf 002121278650145789899999999998---4106753037801----------178--------------------- Q gi|254780680|r 283 KCELVSITREEDSFTEHERMLSCAEEILKR---LDLHYRVVSLCTG----------DLG--------------------- 328 (430) Q Consensus 283 KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~---L~lpyRvv~~~sg----------dlg--------------------- 328 (430) .-+..+||.+++..++...........+.. +++....+..... -+| T Consensus 162 ~~da~sF~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 241 (471) T 3a32_A 162 QDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINE 241 (471) T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHH T ss_pred EECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 70657863717899999999999999999998607764201210013655555410058647678899999999986164 Q ss_pred -----------CHHHEEEEEEEECCC----CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEEC-CCHHHHHHH Q ss_conf -----------443402410110100----4833237531021007645326847338998410104200-432289999 Q gi|254780680|r 329 -----------FSACKTYDLEVWLAG----QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLN-GSGVAVGRC 392 (430) Q Consensus 329 -----------~~a~~~~DiE~w~P~----~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlN-gt~~A~~R~ 392 (430) ..+...-.++.+++. .++-..++. ....-..+.|.++.|-+..+.+...++.+. |+.-.+.|+ T Consensus 242 ~~~~~~~~~~~~~~~~~~k~d~~~~~~~~~~gr~~~~~t-~~~~~~~~~~f~l~y~~~~~~~~~~p~~~~~~~~g~~~R~ 320 (471) T 3a32_A 242 KYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGT-IQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERF 320 (471) T ss_dssp HHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEE-EEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHH T ss_pred CCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCEEECCE-EEEEECCHHHCCCEEEECCCCCEECEEEEEECCCCCHHHH T ss_conf 545314752673224466511231013432242340434-5675013321687147506894634088851456626777 Q ss_pred HHHHHHHCCCCCCCEECCCCCCCC Q ss_conf 999988346899838658222310 Q gi|254780680|r 393 LIAILENYLNADGSVTIPTVLRPY 416 (430) Q Consensus 393 l~ailEn~q~~dg~i~iP~~L~py 416 (430) ++|++|+|. ...|..|-|| T Consensus 321 ia~liE~~g-----~~lP~~LAP~ 339 (471) T 3a32_A 321 LGVYLEHRR-----GRMPFTLAPI 339 (471) T ss_dssp HHHHHHHTT-----TCCCGGGCSC T ss_pred HHHHHHHCC-----CCCCCCCCCC T ss_conf 767898708-----9888643773 No 18 >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Probab=99.74 E-value=3.5e-17 Score=146.85 Aligned_cols=182 Identities=21% Similarity=0.243 Sum_probs=155.6 Q ss_pred CCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHH Q ss_conf 21122022117310001122216753010564889999999999986223203202123562027889865514224767 Q gi|254780680|r 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADD 218 (430) Q Consensus 139 k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~ 218 (430) ++|- |..+.|.+- -++||||.+--.|++|-+.|+++.-+. ..+.||.+|..|.|...+++.++||+.+|.|. T Consensus 21 ~~~~-l~~r~g~i~------~~~aGlydygP~G~~lk~~I~~~wr~~-~~~~g~~EV~~P~i~p~~V~kaSGHvd~F~D~ 92 (572) T 2j3l_A 21 LSHQ-ILLRAGYIR------QVAAGIYSYLPLANRVLEKLKTIMREE-FEKIDAVEMLMPALLPAELWKESGRYETYGPN 92 (572) T ss_dssp HHHH-HHHHTTSEE------EEETTEEEECHHHHHHHHHHHHHHHHH-HHTTTCEECBCCSEEETHHHHHHSHHHHSCTT T ss_pred HHHH-HHHHCCCCC------CCCCCCCEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCC T ss_conf 3279-998758875------368816272362999999999999999-99869989989750888999860985536667 Q ss_pred HHHHHH----CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 764310----0023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 219 MFCTTD----GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 219 ~y~~~d----~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) ||...| +++|-||.|...+.++.+++..+.+||+++..+++.||.|.++ ..|+.|+.+|...+++.|+.+.+ T Consensus 93 M~~~~d~~~~~~~l~p~~e~~~~~~~~~~~~s~~~lp~~~~~~~~~~r~e~~~----~~g~~r~~ef~~~~~~~~~~~~~ 168 (572) T 2j3l_A 93 LYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRS----RSGLLRGREFIMKDGYSFHADEA 168 (572) T ss_dssp SCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC----CTGGGSCSEEEEEEEEEEESSHH T ss_pred EEEEEECCCCEEEECCCCCHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCCC----CCCCCCCCHHEECCCCCCCCCCC T ss_conf 07878469876876788725778998751113654608887425523555577----66655421100011441035621 Q ss_pred -HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHH Q ss_conf -14578989999999999841067530378011784434 Q gi|254780680|r 295 -SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSAC 332 (430) Q Consensus 295 -S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~ 332 (430) ..+..+.+......+|..++++|..+....+.+|...+ T Consensus 169 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 207 (572) T 2j3l_A 169 SLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDS 207 (572) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC T ss_conf 157888889999999987417521011210354566755 No 19 >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Probab=99.61 E-value=3.2e-15 Score=132.20 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=152.6 Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH--HCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEE Q ss_conf 999999862232032021235620278898655--142247677643100023134541145445342059555042088 Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 (430) Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG--~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~ 255 (430) |.++..++. .++||.+|.+|.++..+.+...| +...+.+++|..+++++|-|+...+++.+++. .....++|+|++ T Consensus 76 l~~~ir~~~-~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~-~~~~~~~p~r~~ 153 (288) T 3dsq_A 76 LEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRE-LERLWDKPIRIF 153 (288) T ss_dssp HHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHH-HTTTSCSCEEEE T ss_pred HHHHHHHHH-HHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHH-HHHCCCCCEEEE T ss_conf 999999999-988798998752652215534576544330220476374201343577178899998-630147984899 Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEE Q ss_conf 5322107884335543432122221020021212786501457898999999999984106-753037801178443402 Q gi|254780680|r 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKT 334 (430) Q Consensus 256 ~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~ 334 (430) .+++|||.|... --|++||+.+|...++.+. ...+.++...+.++++.||+. |++..-|+...|.. T Consensus 154 ~ig~vfR~E~~~-------~~h~~eFtQ~e~~~~~~~~--~~~~~~l~~l~~~~l~~~g~~~~~~~~~~~~~~~~~---- 220 (288) T 3dsq_A 154 EIGTCYRKESQG-------AQHLNEFTMLNLTELGTPL--EERHQRLEDMARWVLEAAGIREFELVTESSVVYGDT---- 220 (288) T ss_dssp EEEEEECSCCSS-------SCCCSEEEEEEEEEETCCG--GGHHHHHHHHHHHHHHHHTCCCCEEEECCCCSSCCC---- T ss_pred EECEEECCCCCC-------CCCCCCEEECCEEEECCCH--HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEE---- T ss_conf 966255568688-------8867827773158986988--999999999999999985997787997047777307---- Q ss_pred EEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC Q ss_conf 41011010048332375310210076453268473389984101042004322899999999883468998386582223 Q gi|254780680|r 335 YDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 335 ~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430) +.....|.|++|+.-.-+.+-+++.+ .....|.|+.+.|+ +.+..+.+ | |+..+... T Consensus 221 ------~~~~~~~~El~~~~~~~~~~~~~~~~------------~~~~~~~g~gierl-am~~~g~~--d--ir~~~r~~ 277 (288) T 3dsq_A 221 ------VDVMKGDLELASGAMGPHFLDEKWEI------------FDPWVGLGFGLERL-LMIREGTQ--H--VQSMARSL 277 (288) T ss_dssp ------EEEEETTEEEEEEEEESCTTTTTTTC------------CSCEEEEEEEHHHH-HHHHHTCS--C--GGGGSSCS T ss_pred ------EECCCCEEEEECCCCCHHHHHHCCCC------------CCCCEEEECCHHHH-HHHHCCCC--C--HHHHHHCC T ss_conf ------86189668860687589999865899------------99878873579999-99870998--5--77763124 Q ss_pred CCCCCEEE Q ss_conf 10188013 Q gi|254780680|r 415 PYMNNLAV 422 (430) Q Consensus 415 pym~g~~~ 422 (430) .||+|++. T Consensus 278 ~y~~Gi~l 285 (288) T 3dsq_A 278 SYLDGVRL 285 (288) T ss_dssp SEETTEES T ss_pred CCCCCCCC T ss_conf 50066005 No 20 >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Probab=99.18 E-value=3.1e-10 Score=95.23 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=171.6 Q ss_pred CHHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH Q ss_conf 2022117310001122216--75301056488999999999998622320320212356202788986551422476776 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF 220 (430) Q Consensus 143 elge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y 220 (430) +|.+.-+.+.. +..|=| ||+|-+---|.++-+-+.+..-...+.+-|..+|..|.|...+++..+|++.+|.|-+. T Consensus 72 ~~~~rr~f~~~--s~~iygg~aG~YdygPlG~~v~~kI~~iwR~emv~~~g~~Ei~~p~l~P~evwkaSGh~~~f~D~~v 149 (693) T 2zt5_A 72 DTLKRRFFYDQ--AFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV 149 (693) T ss_dssp HHHHHTTSEEE--TTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE T ss_pred HHHHHCCCCCC--CCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCHH T ss_conf 99874446245--5012153665305335489999999999999985405978953132589899973698522443046 Q ss_pred ---------H----HHHCCEECC--------------------------------------------------------- Q ss_conf ---------4----310002313--------------------------------------------------------- Q gi|254780680|r 221 ---------C----TTDGRWLIP--------------------------------------------------------- 230 (430) Q Consensus 221 ---------~----~~d~l~Li~--------------------------------------------------------- 230 (430) . .++.+-.++ T Consensus 150 ~~~~~~~r~RaD~ll~~~~e~~~t~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ir~p~~g~~~g~~R~refmmk 229 (693) T 2zt5_A 150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK 229 (693) T ss_dssp EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE T ss_pred HHCCCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 65534533314321167887750205666888888898986342014789999999718989887886554534112554 Q ss_pred ----------------CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf ----------------4541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 231 ----------------TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 231 ----------------TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) |+.--..||-+=-.....+||.-.+-.+..||.|.-. -.||+|+..|+-.|+..|+.|++ T Consensus 230 d~~g~~~~~~~~lrpetaq~~f~ay~ri~~~~g~klpf~~AqiG~~frnEi~p----r~gl~R~rEf~~~e~e~F~~p~~ 305 (693) T 2zt5_A 230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP----RSGLIRVREFTMAEIEHFVDPSE 305 (693) T ss_dssp EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC----CSGGGSCSEEEEEEEEEEECTTC T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CEEEECCCCCEEEEEEECCCHHH T ss_conf 13466641243135468999999999999970888865998536665776666----53342258765888862357214 Q ss_pred HHH------------------------------------------HHHHHHHHHHHHHHHHCCH---HHHCCCCCHHCCC Q ss_conf 145------------------------------------------7898999999999984106---7530378011784 Q gi|254780680|r 295 SFT------------------------------------------EHERMLSCAEEILKRLDLH---YRVVSLCTGDLGF 329 (430) Q Consensus 295 S~~------------------------------------------~~e~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~ 329 (430) ... ++...+.....++..++++ .|.......++-. T Consensus 306 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ti~eav~~g~i~~~~~~~~~~~~~~~l~~~g~~~~~lr~~~~~~~e~a~ 385 (693) T 2zt5_A 306 KDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAH 385 (693) T ss_dssp CCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCT T ss_pred HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHH T ss_conf 55576765554322435602342478734107999987267248999999999889999707777784431155165555 Q ss_pred HHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC--------------------------------------------- Q ss_conf 43402410110100483323753102100764532--------------------------------------------- Q gi|254780680|r 330 SACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM--------------------------------------------- 364 (430) Q Consensus 330 ~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl--------------------------------------------- 364 (430) .+..+.|+|.-.| -.|.|+.-+.+-+||--... T Consensus 386 ya~~~~d~e~~~~--~g~~El~Gia~r~~~dL~~~~~~s~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~f~~d~~~v~~ 463 (693) T 2zt5_A 386 YACDCWDAESKTS--YGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVME 463 (693) T ss_dssp TCSSEEEEEEEET--TEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-------------------------------- T ss_pred HHHHHHHHHCCCC--CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 5543333112567--77210004223346662344321133123211035765015888724744234331445888874 Q ss_pred -----------------------------------------CCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC Q ss_conf -----------------------------------------684733899841010420043228999999998834689 Q gi|254780680|r 365 -----------------------------------------NSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNA 403 (430) Q Consensus 365 -----------------------------------------~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~ 403 (430) +..+.+.+++ ...+|+. -.+.-|+|+++||+|++-.+ T Consensus 464 ~~~~~d~~~~~~~~~~l~~~~~~~l~~~G~~f~l~~~~~~~~~~~~~~~g~-~~~P~Mg-cyGIGVsRilaAiiEq~~de 541 (693) T 2zt5_A 464 YLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVE-EVVPNVI-EPSFGLGRIMYTVFEHTFHV 541 (693) T ss_dssp ------------------------------------------------CCE-EECCEEE-EEEEEHHHHHHHHHHHHEEE T ss_pred CCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEEECHHHHHHHHHHCCCCCC-EECCEEE-EECCCHHHHHHHHHHHHHHH T ss_conf 024677521012200113586588732573788544777765540035674-6454689-81367027999999986330 Q ss_pred CCC------EECCCCCCCCC Q ss_conf 983------86582223101 Q gi|254780680|r 404 DGS------VTIPTVLRPYM 417 (430) Q Consensus 404 dg~------i~iP~~L~pym 417 (430) +|- .+.|..+=||= T Consensus 542 ~gi~e~R~vL~wP~~IAP~k 561 (693) T 2zt5_A 542 REGDEQRTFFSFPAVVAPFK 561 (693) T ss_dssp CSSTTCCEEECCCTTTSSCS T ss_pred CCCCCCEEEEECCCCCCCCE T ss_conf 27874013764798758957 No 21 >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Probab=99.09 E-value=8.2e-10 Score=92.06 Aligned_cols=256 Identities=12% Similarity=0.037 Sum_probs=158.6 Q ss_pred CCCHHHHCCCCCHHHHHHHCC--CCCE----EECCHHHHHHHHHHHHHHHHHHHHCC-CCEEHHHHHCCHHHHHHHHHCH Q ss_conf 122022117310001122216--7530----10564889999999999986223203-2021235620278898655142 Q gi|254780680|r 141 HFEIGEALGLMDFDRATKLSG--ARFS----VLTGHLAHLERALGQFMIDLHTSEHG-YTEVSAPLLVRDEAMYGTGQIP 213 (430) Q Consensus 141 H~elge~l~liDfe~a~kvsG--srF~----~Lkg~~A~Le~ALi~y~ld~~~~~~G-y~~v~~P~lv~~~~~~gtG~lp 213 (430) =++|++.-+.+. -++.|-| ++|| =|=--|+.|-+.|.+......+..+. ...+-. +- T Consensus 69 ~~~l~krrgf~~--~s~eiygg~~~~~~~~~dyGPlG~~lk~Ni~~~W~~~~v~~~~~~~~~d~--------------~~ 132 (459) T 3ikl_A 69 LLEICQRRHFLS--GSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDA--------------LH 132 (459) T ss_dssp HHHHHHHTTSBC--SCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCC--------------CS T ss_pred HHHHHHHCCCCC--CCCHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC--------------CC T ss_conf 999997348852--58132057100266788868322999999999999997430587775045--------------55 Q ss_pred HHHHHHHH--HHHCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 24767764--310002313-454114544534205955504208853221078843355434321222210200212127 Q gi|254780680|r 214 KFADDMFC--TTDGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT 290 (430) Q Consensus 214 ~f~~~~y~--~~d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~ 290 (430) .|.+-+-- ....-||=| ||---+.++-.-......+||+.++-++.|||-|.-. ..--.||+|+.+|+.-|+..|| T Consensus 133 ~~~~p~~~~~~~~~~yLRPetaqGif~nFkn~~~~~rkkLPfgiaQIGk~FRnEise-i~PR~GL~RvREFtQ~D~e~F~ 211 (459) T 3ikl_A 133 HKPGPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFT 211 (459) T ss_dssp BCCSCCCSSCSCCTTB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-CCCCCCCEECCCEEEEEEEEEE T ss_conf 679998777665424566223451588799999853778986677850111465465-5677773033434720589996 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC---- Q ss_conf 8650145789899999999998410675303780117844340241011010048332375310210076453268---- Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS---- 366 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i---- 366 (430) +|+++.++++.++.....+|..+|++.-.+.....+ ..-+....|++.-+| -.|.|+..+.+.+||.-..... T Consensus 212 ~P~~~~e~~~~~~~~~~~~~~~lGi~~~~lr~~~h~-~~~a~~~~d~e~~~~--~g~~E~~gia~r~d~dL~~h~~~s~~ 288 (459) T 3ikl_A 212 PPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQ-DEEGRKGNKLYYNFP--WGKELIETLWNLGDHELLHMYPGNVS 288 (459) T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEEC-CSSSSCEEEEEEECS--SCEEEEEEEEEEETHHHHHHSCSCSS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCC-CCCCCCHHHHCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 872468999999999999999968982444653455-211231112136657--78987524222001552000245543 Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCCC Q ss_conf 47338998410104200432289999999988-3468998-----------386582223101 Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPYM 417 (430) Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~pym 417 (430) .+...+.+....+|.+-. ..-+.|.+.|+++ .|+.+++ .++.|..|-||= T Consensus 289 ~~~~~d~~~~~~p~vie~-s~gldr~l~a~l~~~y~~~~~~~~~~~~~~R~vL~lp~~lAP~k 350 (459) T 3ikl_A 289 KLHGRDGRKNVVPCVLSV-NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK 350 (459) T ss_dssp SSCCBSSSCBCCCEEEEE-EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC T ss_pred CCCCCCCCCCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHCCCE T ss_conf 333311134433216874-32110678788865324221443466776514443472116760 No 22 >2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Probab=99.06 E-value=3.2e-09 Score=87.69 Aligned_cols=208 Identities=19% Similarity=0.237 Sum_probs=141.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH--HHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCH Q ss_conf 488999999999998622320320212356202788986551422--476776431000231345411454453420595 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK--FADDMFCTTDGRWLIPTSEVSLTNLYSHEIIES 247 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~--f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~ 247 (430) ..+.+++++-+|+. .+||.+|.+|.|...+.....|..+. +...++..+.+++|-|+...++..++....-. T Consensus 79 ~~~~i~~~ir~~f~-----~~Gf~EV~TP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~- 152 (291) T 2zin_A 79 YLGKLEREITRFFV-----DRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRA- 152 (291) T ss_dssp HHHHHHHHHHHHHH-----HTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTT- T ss_pred HHHHHHHHHHHHHH-----HCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCCHHHHHHHHHHH- T ss_conf 99999999999999-----887999976522331220136888774121213257801126642345145777877652- Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC Q ss_conf 55042088532210788433554343212222102002121278650145789899999999998410675303780117 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL 327 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl 327 (430) ...|+|++.+++|||.|.... -|..+|+.+|...+- +...++.+....+++++.|++.|+++.-...-. T Consensus 153 ~~~p~r~f~ig~vfR~e~~~~-------~h~~eF~q~e~~~~~----~~~~~~dl~~~~~~~l~~lg~~~~~~~~~~~~~ 221 (291) T 2zin_A 153 LPDPIKIFEIGPCYRKESDGK-------EHLEEFTMLNFCQMG----SGCTRENLESIITDFLNHLGIDFKIVGDSCMVY 221 (291) T ss_dssp SCSSEEEEEEEEEECCCSCSS-------SCCSEEEEEEEEEES----TTCCHHHHHHHHHHHHHHHTCCCEEECC----- T ss_pred CCCCCEEEEECCEEEECCCCC-------CCCCCEEEEEEEEEC----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 133402466410122034567-------888863899999989----999799999999999998599278713665676 Q ss_pred CCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 84434024101101004833237531021007645326847338998410104200432289999999988346899838 Q gi|254780680|r 328 GFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407 (430) Q Consensus 328 g~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i 407 (430) ....| + ...|.|+.++.-.....-+.++|- + ..+.+ ++.+.|+..+. +...| | T Consensus 222 ----~~~~~--~----~~~~~ei~~~~~~~~~v~~~~gid------~-p~~~~-----g~g~erla~~~---~~~~d--i 274 (291) T 2zin_A 222 ----GDTLD--V----MHGDLELSSAVVGPIPLDREWGID------K-PWIGA-----GFGLERLLKVK---HDFKN--I 274 (291) T ss_dssp ----CEEEE--E----EETTEEEEEEEESCCGGGGGGTCC------S-CEEEE-----EEEHHHHHHHH---TTCSS--G T ss_pred ----CCCCC--C----CCCCEEEECCCEECHHHHHHCCCC------C-CEEEE-----CCCHHHHHHHH---CCCCC--H T ss_conf ----76602--1----668757403860169999866999------9-81886-----75899999875---29993--4 Q ss_pred ECCCCCCCCCCCEE Q ss_conf 65822231018801 Q gi|254780680|r 408 TIPTVLRPYMNNLA 421 (430) Q Consensus 408 ~iP~~L~pym~g~~ 421 (430) +..+---.|.+|++ T Consensus 275 r~~~r~~~y~~Gie 288 (291) T 2zin_A 275 KRAARSGSYYNGIS 288 (291) T ss_dssp GGGSSCSSEETTEE T ss_pred HHHHHHHCEECCEE T ss_conf 55541230006502 No 23 >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Probab=99.06 E-value=3.6e-10 Score=94.73 Aligned_cols=146 Identities=15% Similarity=0.191 Sum_probs=119.5 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH--HHCHHHHHHHHHHH----HCCEECCCCCCH Q ss_conf 753010564889999999999986223203202123562027889865--51422476776431----000231345411 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTT----DGRWLIPTSEVS 235 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt--G~lp~f~~~~y~~~----d~l~Li~TaEvp 235 (430) .||+.+.+.+|++.+.|.+++.+. ...+||.+|.||.+-..+++... |+.+...++||... ..+.|=|+...| T Consensus 6 ~G~~d~lP~~~~~~~~i~~~i~~~-~~~~Gy~~V~tP~ie~~dl~~~~~g~~~~~~~~~mf~~~D~~g~~~~LRpd~t~~ 84 (420) T 1qe0_A 6 RGTQDILPEDSKKWRYIENQLDEL-MTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAA 84 (420) T ss_dssp TTCCCBCHHHHHHHHHHHHHHHHH-HHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHCCCEECCCCCEEEECCCCCHH T ss_conf 978665988999999999999999-9986997999952040877425567521115765043266999888327776849 Q ss_pred HHHHHHH-HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 4544534-205955504208853221078843355434321222210200212127865014578989999999999841 Q gi|254780680|r 236 LTNLYSH-EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLD 314 (430) Q Consensus 236 L~~~~~~-~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~ 314 (430) ++-++.. ......+||+|++-+++|||.|.. |..|+.||.-...-.||.++. ..-.|++..+.++++.++ T Consensus 85 ~~r~~~~~~~~s~~~lP~r~~~~g~v~R~e~~-------~~~R~Ref~Q~~~ei~g~~~~--~~d~E~~~~~~~~~~~~~ 155 (420) T 1qe0_A 85 VVRSYIEHKMQGNPNQPIKLYYNGPMFRYERK-------QKGRYRQFNQFGVEAIGAENP--SVDAEVLAMVMHIYQSFG 155 (420) T ss_dssp HHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCCH--HHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCEEECCCC-------CCCCEEEEEEECCEEECCCCC--CHHHHHHHHHHHHHHHCC T ss_conf 99999985664067787589988647870466-------788513678712105337777--127999999999998638 Q ss_pred CHH Q ss_conf 067 Q gi|254780680|r 315 LHY 317 (430) Q Consensus 315 lpy 317 (430) +.- T Consensus 156 ~~~ 158 (420) T 1qe0_A 156 LKH 158 (420) T ss_dssp CCC T ss_pred CCC T ss_conf 778 No 24 >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Probab=98.92 E-value=4.6e-09 Score=86.50 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=116.2 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC-------------HHHHHHHHHHH----H Q ss_conf 753010564889999999999986223203202123562027889865514-------------22476776431----0 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI-------------PKFADDMFCTT----D 224 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l-------------p~f~~~~y~~~----d 224 (430) .||+.+-..++++.+.|.+++.+. ..++||.+|.+|.|-+.+++...|.. |.....+|... . T Consensus 16 ~G~~d~lP~~~~~~~~i~~~~r~~-~~~~Gy~eI~tP~le~~dl~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 94 (465) T 3net_A 16 SGFPEFLPSEKRLELYLLDTIRRV-YESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSE 94 (465) T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------C T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCC T ss_conf 986203986999999999999999-9987997999651173888706577666243322024550124441665677886 Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHH Q ss_conf 00231345411454453420595550420885322107884335543432122221020021212786501457898999 Q gi|254780680|r 225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLS 304 (430) Q Consensus 225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~ 304 (430) .++|-|-.-.|++-++... +....+|+|++.++++||.|.... | |+.||+-...-.||.++.|...--+++. T Consensus 95 ~l~Lrpd~t~~~~r~~~~~-~~~~~~p~r~~~~g~~~R~e~~~~-----g--r~Ref~Q~~~ei~g~~~~~~~~dae~i~ 166 (465) T 3net_A 95 ARALKFDQTVPLAAYIARH-LNDLTFPFARYQMDVVFRGERAKD-----G--RFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465) T ss_dssp CEEECSCSHHHHHHHHHHH-GGGSCSSEEEEECCEEECBC-------------CCEEEEEEEEEECSSCCCHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHH-CCCCCCCEEEEEEEEEEEECCCCC-----C--CCCHHHCCCEEEEECCCCCCHHHHHHHH T ss_conf 7995378878999999851-101479879999601888237887-----8--5023220675477157764188899998 Q ss_pred HHHHHHHHHCCHHHHCCCC Q ss_conf 9999999841067530378 Q gi|254780680|r 305 CAEEILKRLDLHYRVVSLC 323 (430) Q Consensus 305 ~~~~i~~~L~lpyRvv~~~ 323 (430) .+-++++.+++..-.+.+. T Consensus 167 ~~~~~~~~~~~~~~~i~i~ 185 (465) T 3net_A 167 IITEIFEAVNIGDFVIRIN 185 (465) T ss_dssp HHHHHHHHHTCSCEEEEEE T ss_pred HHHHHHHHCCCCCHHHCCC T ss_conf 6887764112466020025 No 25 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Probab=98.83 E-value=4e-09 Score=86.93 Aligned_cols=269 Identities=16% Similarity=0.123 Sum_probs=171.0 Q ss_pred HHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH Q ss_conf 022117310001122216--7530105648899999999999862-2320320212356202788986551422476776 Q gi|254780680|r 144 IGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLH-TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF 220 (430) Q Consensus 144 lge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~-~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y 220 (430) |..+-|.+ -.++++-| ||+|-+---|.++-+-+.+.--..+ ....|+.+|..|.+...+++..+|++..|.|.|+ T Consensus 11 l~~r~Gfi--~~~~e~~~~~sGiy~~LPlG~rvl~KIe~iiR~em~~~~~~~~ev~~p~i~p~eLWk~SGr~e~~~d~m~ 88 (505) T 1ati_A 11 LCKRRGFI--FQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMV 88 (505) T ss_dssp HHHHTTSE--EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEE T ss_pred HHHHCCCE--ECCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCCCHHH T ss_conf 99737875--1461003770379755810899999999999999874459858987344589889975799420371166 Q ss_pred ---HHH----HCCEECCCCCCHHHH------------------------------------------------------- Q ss_conf ---431----000231345411454------------------------------------------------------- Q gi|254780680|r 221 ---CTT----DGRWLIPTSEVSLTN------------------------------------------------------- 238 (430) Q Consensus 221 ---~~~----d~l~Li~TaEvpL~~------------------------------------------------------- 238 (430) ... ++.+|-||.|--++. T Consensus 89 ~~~~~~dr~~~~~~l~~t~eE~i~kd~~s~~~~~~~~~~~y~~~~~ay~~i~~~~~~~~i~~~~sg~~~~~~~~~~~~~~ 168 (505) T 1ati_A 89 DNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMM 168 (505) T ss_dssp EC--------------------------------------------------------------------CCCCEEEECB T ss_pred HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 53424301052010331145555544333343255489999999873999999988607657765776786641000012 Q ss_pred ----------------------------HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf ----------------------------4534205955504208853221078843355434321222210200212127 Q gi|254780680|r 239 ----------------------------LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT 290 (430) Q Consensus 239 ----------------------------~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~ 290 (430) +..........+|..+...+.+||-|.. ...|+.|+.+|...+...++ T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~r~e~~----~~~~~~r~r~~~~~~~~~~~ 244 (505) T 1ati_A 169 FQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT----PRNFIFRVREFEQMEIEYFV 244 (505) T ss_dssp EEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS----CCTGGGSCSEEEEEEEEEEE T ss_pred CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC----CCCCEEEEEEHHHCCEEEEE T ss_conf 44443321244312223520011023334543121002576100245321125234----32023554300013124550 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC-HHHHCC--CCCHHCCCHHHEEEEEEEECCCCCCEEEEEEE-------------- Q ss_conf 8650145789899999999998410-675303--78011784434024101101004833237531-------------- Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDL-HYRVVS--LCTGDLGFSACKTYDLEVWLAGQNLYREISSC-------------- 353 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~l-pyRvv~--~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~-------------- 353 (430) .+++....+.......-..+...++ |+.+.. ....++...+...++.+.=.+ -.+-+...+ T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 322 (505) T 1ati_A 245 RPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFDLGSHTKD 322 (505) T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEET--TEEEEEEEEEECTTHHHHHHCSS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCEECCCCCCCCCCCCCCC T ss_conf 5214568999999999999875136652378864124222567887777750798--55220401145686454664324 Q ss_pred --------CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC-------C-CCCCEECCCCCCCCC Q ss_conf --------021007645326847338998410104200432289999999988346-------8-998386582223101 Q gi|254780680|r 354 --------STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYL-------N-ADGSVTIPTVLRPYM 417 (430) Q Consensus 354 --------Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q-------~-~dg~i~iP~~L~pym 417 (430) -..+.--|..++..|.+.+|++ ..+|+ ...+.-+.|+++|++|.+- . .+..++.|..+-||= T Consensus 323 ~~~~~~~~~~lg~kys~~~~~~~~~~~gk~-~~~~m-g~ygigv~r~~~a~ie~~~~~~~~~~~~d~~gi~wP~~IAPfq 400 (505) T 1ati_A 323 QEALGITARVLRNEHSTQRLAYRDPETGKW-FVPYV-IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK 400 (505) T ss_dssp TTTTTCCSCCCCCSCCCSCCCEECSSSCCE-ECCEE-EEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCEE-ECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEE T ss_conf 650036689836523441224451777989-48768-8988665404999998763033303531001035995718736 Q ss_pred CCEEEEC Q ss_conf 8801307 Q gi|254780680|r 418 NNLAVIK 424 (430) Q Consensus 418 ~g~~~i~ 424 (430) ..+|+ T Consensus 401 --V~Iip 405 (505) T 1ati_A 401 --VAVIP 405 (505) T ss_dssp --EEEEE T ss_pred --EEEEE T ss_conf --99996 No 26 >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Probab=98.79 E-value=1e-08 Score=83.85 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=114.9 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH--HHCHHHHHHHHHHH----HCCEECCCCCCH Q ss_conf 753010564889999999999986223203202123562027889865--51422476776431----000231345411 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTT----DGRWLIPTSEVS 235 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt--G~lp~f~~~~y~~~----d~l~Li~TaEvp 235 (430) .||+.+-.+++++-..|.+|+.+. ..++||.+|.||.|-+.+++... |+...+.++||... +.+.|-|...+| T Consensus 7 kG~~d~lP~g~~i~~~l~~~i~~~-~~~~Gy~~V~TP~ie~~dl~~~~~~~~~d~~~~~my~~~D~~g~~l~Lrpd~t~~ 85 (421) T 1h4v_B 7 RGTKDLFGKELRMHQRIVATARKV-LEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAA 85 (421) T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHCCCCCCCCHHHHHCEEEECCCCCEEEECCCCCHH T ss_conf 987235988999999999999999-9985997988962150988633468632103664502466999888525767489 Q ss_pred HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 45445342059555042088532210788433554343212222102002121278650145789899999999998410 Q gi|254780680|r 236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 (430) Q Consensus 236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l 315 (430) ++-++...-.....+|+|++..++|||.|... +|.+|.+...-+|.|... +.....+++..+.+++..+++ T Consensus 86 ~~r~~~~~~~~~~~~p~k~y~~~~v~R~e~~~-----~g~~r~~~q~~~~i~~~~----~~~~~~e~~~~~~~~~~~~~~ 156 (421) T 1h4v_B 86 MVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-----KGRYRQFHQVNYEALGSE----NPILDAEAVVLLYECLKELGL 156 (421) T ss_dssp HHHHHHHTTGGGSSSSEEEEEEEEEECCCCC---------CCEEEEEEEEEESCC----CHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCCEEEEEECCEEECCCCC-----CCCEEEEEECCCEECCCC----CHHHHHHHHHHHHHHHHHHCC T ss_conf 99999985654047872699875535316788-----884145665062112454----326778999999999886076 Q ss_pred H Q ss_conf 6 Q gi|254780680|r 316 H 316 (430) Q Consensus 316 p 316 (430) . T Consensus 157 ~ 157 (421) T 1h4v_B 157 R 157 (421) T ss_dssp C T ss_pred C T ss_conf 6 No 27 >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Probab=98.69 E-value=1.3e-07 Score=75.64 Aligned_cols=149 Identities=13% Similarity=0.167 Sum_probs=117.5 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH--HCHHHHHHHHHHH----HCCEECCCCCCH Q ss_conf 7530105648899999999999862232032021235620278898655--1422476776431----000231345411 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTT----DGRWLIPTSEVS 235 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG--~lp~f~~~~y~~~----d~l~Li~TaEvp 235 (430) .||+.+-..++++-+.|++++.+. ..++||++|.||.|-..+++...| ..+...++||... +.+.|-|-..+| T Consensus 8 ~G~~d~lP~g~~~~~~l~~~ir~~-~~~~Gy~eI~tP~le~~dl~~~s~g~~~d~~~~~m~~~~d~~g~~l~Lrpd~t~~ 86 (423) T 1htt_A 8 RGMNDYLPGETAIWQRIEGTLKNV-LGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAG 86 (423) T ss_dssp TTCCCBCHHHHHHHHHHHHHHHHH-HHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCHHHCCCEECCCCCEECCCCCCCHH T ss_conf 998755988999999999999999-9986997999852041999843368510000032032044899876048888578 Q ss_pred HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 45445342059555042088532210788433554343212222102002121278650145789899999999998410 Q gi|254780680|r 236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 (430) Q Consensus 236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l 315 (430) ++-+++..- ....+|+|++-++++||.|... +|.+|.+...=+|++....++ .-.+++..+.+++..+++ T Consensus 87 i~r~~~~~~-~~~~~p~r~~y~g~v~R~~~~~-----~g~~re~~q~~~e~~g~~~~~----~d~e~i~~~~~~l~~~~~ 156 (423) T 1htt_A 87 CVRAGIEHG-LLYNQEQRLWYIGPMFRHERPQ-----KGRYRQFHQLGCEVFGLQGPD----IDAELIMLTARWWRALGI 156 (423) T ss_dssp HHHHHHHHT-CSTTCCEEEEEEEEEECCCCCC-----SSCCSEEEEEEEEEESCCSHH----HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHH-HHCCCCEEEEEECCEEEECCCC-----CCCEEEEEEECCHHCCCCHHH----HHHHHHHHHHHHHHHHCC T ss_conf 799998644-2237985899854178832688-----886257766042120540678----889999999999987234 Q ss_pred HHHHCC Q ss_conf 675303 Q gi|254780680|r 316 HYRVVS 321 (430) Q Consensus 316 pyRvv~ 321 (430) ....+. T Consensus 157 ~~~~~~ 162 (423) T 1htt_A 157 SEHVTL 162 (423) T ss_dssp GGGCEE T ss_pred CCCEEE T ss_conf 431266 No 28 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Probab=98.68 E-value=1.1e-07 Score=76.32 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=128.4 Q ss_pred HCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHH Q ss_conf 0002313-45411454453420595550420885322107884-335543432122221020021212786501457898 Q gi|254780680|r 224 DGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHER 301 (430) Q Consensus 224 d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~ 301 (430) ..-||=| ||.--++++..-......+||++++-++.+||-|. |. .--.||+|+.+|+.-|+-.||+|+++.+++.. T Consensus 135 ~~~yLRPETaQgifvnF~n~~~~s~kkLPfgiaQIGk~FR~E~nEi--~PR~GL~R~REF~q~D~e~F~~pe~~~~~~~~ 212 (454) T 1g5h_A 135 TSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSN--QTPSSVTRVGEKTEASLVWFTPTRTSSQWLDF 212 (454) T ss_dssp HSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEEEECHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCC--CCCCCCCHHHHEEHHCEEEEECCCHHHHHHHH T ss_conf 4542373010579999999998426788855555302224776776--68767760213311027668774255899999 Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE----ECCCCCCCC Q ss_conf 9999999999841067530378011784434024101101004833237531021007645326847----338998410 Q gi|254780680|r 302 MLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY----RDPNSKSLK 377 (430) Q Consensus 302 ~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry----~~~~~~~~~ 377 (430) ++.....+|..||++.-.+.....+ ..-+....|++.=+| -.|.|+..+.+.+||.-..-.... .+..+.. . T Consensus 213 ~~~~~~~~~~~lGi~~~~~r~~~~~-~~~~~~~~d~~~~~~--~g~~E~~g~~~r~~~dl~~~~~~~~~~~~~~~~~~-~ 288 (454) T 1g5h_A 213 WLRHRLLWWRKFAMSPSNFSSADCQ-DELGRKGSKLYYSFP--WGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRK-N 288 (454) T ss_dssp HHHHHHHHHHTTCSSGGGEEEEEEE-CTTSCEEEEEEEEET--TEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTE-E T ss_pred HHHHHHHHHHHHCCCHHHHEECCCC-CCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC-C T ss_conf 9999999999848885572121342-001432366766546--55898888756865100000002221111332113-3 Q ss_pred EEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCC Q ss_conf 104200432289999999988-3468998-----------38658222310 Q gi|254780680|r 378 FTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPY 416 (430) Q Consensus 378 ~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~py 416 (430) +......+..-+.|.+.+++. .|..+++ ..++|..|-|| T Consensus 289 ~~p~v~e~s~~~d~~~~~~l~~~y~~~~~~~~~~~~~~R~vlklp~~lAP~ 339 (454) T 1g5h_A 289 VVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPI 339 (454) T ss_dssp ECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSC T ss_pred CCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC T ss_conf 353473243355520014454202345343335666203565337655873 No 29 >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Probab=98.20 E-value=3.4e-06 Score=65.13 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=101.0 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHH Q ss_conf 675301056488999999999998622320320212356202788986551422476776431----0002313454114 Q gi|254780680|r 161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSL 236 (430) Q Consensus 161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL 236 (430) -.||.-+-++++++.+.+.+++.+. ...+||.+|.||.|-+.+++...+. +...++||... ..++|=|=.=.|+ T Consensus 32 ~~G~~d~lP~~~~~~~~i~~~i~~~-~~~~Gy~eV~TP~le~~dl~~~~~g-~~~~~~my~f~D~~g~~l~LRPD~T~~i 109 (456) T 3lc0_A 32 VQGCRDFPPEAMRCRRHLFDVFHAT-AKTFGFEEYDAPVLESEELYIRKAG-EEITEQMFNFITKGGHRVALRPEMTPSL 109 (456) T ss_dssp STTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEGGGGCCCSC-CHHHHTCEEEECSSSCEEEECSCSHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCC-CCCHHHEEEEECCCCCEEEECCCCCHHH T ss_conf 8998676988999999999999999-9986995988876362877434678-5103310677869998896378684999 Q ss_pred HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 54453420595550420885322107884335543432122221020--0212127865014578989999999999841 Q gi|254780680|r 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILKRLD 314 (430) Q Consensus 237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~ 314 (430) +-++...-.+. ..|+|++.++++||.|....| -+ +||.. +|++....+ ..-.+.+..+.+++..|+ T Consensus 110 aR~~~~~~~~~-~~~~r~~y~g~v~R~~~~~~g-----~~--re~~Q~g~eiig~~~~----~~d~e~i~l~~~~~~~lg 177 (456) T 3lc0_A 110 ARLLLGKGRSL-LLPAKWYSIPQCWRYEAITRG-----RR--REHYQWNMDIVGVKSV----SAEVELVCAACWAMRSLG 177 (456) T ss_dssp HHHHHHSCTTC-CSSEEEEECCEEECCCC----------C--CEEEEEEEEEESCCST----HHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCC-CCCEEEEEECCEEEECCCCCC-----CC--HHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCC T ss_conf 99999621205-777368740647850489888-----71--2645545541577516----678888776777775327 Q ss_pred CH Q ss_conf 06 Q gi|254780680|r 315 LH 316 (430) Q Consensus 315 lp 316 (430) ++ T Consensus 178 ~~ 179 (456) T 3lc0_A 178 LS 179 (456) T ss_dssp CC T ss_pred CC T ss_conf 75 No 30 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Probab=98.13 E-value=1.4e-05 Score=60.50 Aligned_cols=140 Identities=17% Similarity=0.254 Sum_probs=96.6 Q ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHH Q ss_conf 5301056488999999999998622320320212356202788986551422476776431----000231345411454 Q gi|254780680|r 163 RFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTN 238 (430) Q Consensus 163 rF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~ 238 (430) ||..+...++.+.+.|.+++.+. ..++||.+|.||.+-+.+++...+. +....+||... ..+.|-|-.-.|++- T Consensus 11 G~~d~lP~g~~~~~~i~~~i~~~-~~~~Gy~eV~tP~ie~~dl~~~~~g-~~~~~~m~~~~d~~g~~l~Lrpd~t~~~~r 88 (434) T 1wu7_A 11 GFRDFYPEDMDVEKFIFKTAEEA-AEAFGFRRIDFPSLEYLDLYRIKSG-EELLQQTYSFVDKGGREVTLIPEATPSTVR 88 (434) T ss_dssp TCCCBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEETHHHHTTSC-TTGGGGSCEEECTTSCEEEECSCSHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCC-CHHHHHHEEEECCCCCEECCCCCCCHHHHH T ss_conf 87635987999999999999999-9985997998873162765065787-502342114445899785137667999999 Q ss_pred HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 45342059555042088532210788433554343212222102002121278650145789899999999998410 Q gi|254780680|r 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 (430) Q Consensus 239 ~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l 315 (430) ++... ...++|+|++.++++||.|.-.. |-+|...---+|++..... ....+.+..+.+.+..+++ T Consensus 89 ~~~~~--~~~~~p~k~~~~~~v~r~~~~~~-----~~~r~~~q~g~e~~g~~~~----~~~~~~~~~~~~~~~~~~~ 154 (434) T 1wu7_A 89 MVTSR--KDLQRPLRWYSFPKVWRYEEPQA-----GRYREHYQFNADIFGSDSP----EADAEVIALASSILDRLGL 154 (434) T ss_dssp HHTTC--TTCCSSEEEEECCEEECCCCSCS-----SCCSEEEEEEEEEESCCSH----HHHHHHHHHHHHHHHHTTT T ss_pred HHHHH--HCCCCCEEEECCCCEEEECCCCC-----CCCCEEEECCEEECCCCCH----HHHHHHHHHHHHHHHHCCC T ss_conf 99764--12678616741387454046667-----7542146632785376521----6679999999999753177 No 31 >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Probab=97.99 E-value=3.3e-05 Score=57.88 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=103.3 Q ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHH Q ss_conf 5301056488999999999998622320320212356202788986551422476776431----000231345411454 Q gi|254780680|r 163 RFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTN 238 (430) Q Consensus 163 rF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~ 238 (430) ||--+.++-+++.+.+.+-..+. ...+||.++.||.+-..+++...|. ....++|+.. ..+.|-|=-=+|++- T Consensus 15 G~~D~~p~~~~~~~~i~~~l~~~-~~~~Gy~~I~tP~~E~~~~~~~~~~--~~~~~~~~f~D~~g~~l~LRpD~T~~iaR 91 (400) T 3od1_A 15 GMRDTLPEWYKTKKNICDQMTEE-INLWGYDMIETPTLEYYETVGVVSA--ILDQQLFKLLDQQGNTLVLRPDMTAPIAR 91 (400) T ss_dssp TCCCBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEETTTHHHHSS--SCGGGSCEEECTTSCEEEECSCSHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCEEEHHHHCCCCC--CCCCCEEEEECCCCCEEEECCCCHHHHHH T ss_conf 87577999999999999999999-9986995767685645155344476--34000599997999989878866599999 Q ss_pred HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 45342059555042088532210788433554343212222-1020021212786501457898999999999984106 Q gi|254780680|r 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 239 ~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) ++....-+ ..+|+|++-.++|||.|.-. +|-+|.+ |+ =||++.. +|...--|++..+.++++.|++. T Consensus 92 ~~a~~~~~-~~~p~k~~y~g~vfR~~~~~-----~g~~re~~Q~-g~EiiG~----~s~~ad~EvI~l~~~~l~~lg~~ 159 (400) T 3od1_A 92 LVASSLKD-RAYPLRLAYQSNVYRAQQNE-----GGKPAEFEQL-GVELIGD----GTASADGEVIALMIAALKRAGLS 159 (400) T ss_dssp HHHHHCSS-SCSCEEEEEEEEEECCCC--------CCCSEEEEE-EEEEESC----CSHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHC-CCCCEEEEEECCEEEECCCC-----CCCCEEEEEC-CEEEEEC----CCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99986510-57872799976788845766-----8961265305-5567524----77287899999999999856997 No 32 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Probab=97.68 E-value=0.00021 Score=51.89 Aligned_cols=141 Identities=21% Similarity=0.208 Sum_probs=98.8 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH--HHHHHHHHH----HCCEECCCCCCHHHHH Q ss_conf 1056488999999999998622320320212356202788986551422--476776431----0002313454114544 Q gi|254780680|r 166 VLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK--FADDMFCTT----DGRWLIPTSEVSLTNL 239 (430) Q Consensus 166 ~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~--f~~~~y~~~----d~l~Li~TaEvpL~~~ 239 (430) -+.+.-|..-+.+.+-..+. ..++||.+|.||.+=..+++...+.-.. ..+++|... ..++|-|=.-+|++-+ T Consensus 30 d~~~~~~~~~~~i~~~l~~~-f~~~Gy~~I~tP~lE~~d~~~~~~~~~~~~~~~~~~~f~D~~g~~l~LRpD~T~~iaR~ 108 (344) T 1z7m_A 30 EMTLNQVKSLRQIEGRLRKL-FSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRL 108 (344) T ss_dssp CCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHH T ss_pred HHCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHH T ss_conf 40999999999999999999-99869979778864427765311688654331132788989999898578660999999 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 53420595550420885322107884335543432122221020--0212127865014578989999999999841067 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) ++.. ...+|+|++-.+++||.+.-.. |-+| ||.. ||+|.. ++...--|++..+-++++.|++.- T Consensus 109 ~a~~---~~~~~~r~~Y~g~VfR~~~~~~-----gr~r--Ef~Q~G~EiiG~----~~~~aD~Eii~l~~~~l~~lgl~~ 174 (344) T 1z7m_A 109 YSQI---KDSTSARYSYFGKIFRKEKRHK-----GRST--ENYQIGIELFGE----SADKSELEILSLALQVIEQLGLNK 174 (344) T ss_dssp HHTC---CSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESS----CHHHHHHHHHHHHHHHHHHHTCSS T ss_pred HHHH---CCCCCCCEEEECCCEEECCCCC-----CCCE--EEEEEEEEECCC----CCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9984---3678802898650138678889-----9840--577710554488----976888999999999998624556 Q ss_pred HHCC Q ss_conf 5303 Q gi|254780680|r 318 RVVS 321 (430) Q Consensus 318 Rvv~ 321 (430) -++. T Consensus 175 ~~i~ 178 (344) T 1z7m_A 175 TVFE 178 (344) T ss_dssp EEEE T ss_pred CEEE T ss_conf 3688 No 33 >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Probab=97.63 E-value=0.00041 Score=49.74 Aligned_cols=192 Identities=19% Similarity=0.193 Sum_probs=113.7 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHCCEECC-CCCCHHHHHHHHHCCCHHHHCC Q ss_conf 9999986223203202123562027889865514224-----767764310002313-4541145445342059555042 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDGRWLIP-TSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~Li~-TaEvpL~~~~~~~~l~~~~LPi 252 (430) ++-..++. ..-||+++.-|.++...--+..-+.|.. ..|.|.+++++.|-+ ||-+..-.|.. . ..+.|+ T Consensus 59 ~~~I~~if-~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~--~--~~~~p~ 133 (294) T 2rhq_A 59 VEEIEDLF-LGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEK--R--NGQGPV 133 (294) T ss_dssp HHHHHHHH-HTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHH--T--TTCSCE T ss_pred HHHHHHHH-HHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--H--CCCCCE T ss_conf 99999999-778971645884104305766348899830204045188503520377680778999985--1--568983 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-H Q ss_conf 088532210788433554343212222102002121278650145789899999999998410675303780117844-3 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-A 331 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-a 331 (430) |+.+.++|||+|+=.+ |. .++|+.+|-+++-+.- -+..+....+.+++.+..+-..+..-..--.|+ - T Consensus 134 ~~~~~G~VyRrD~iDa---tH----~p~FhQ~Eg~~v~~~~----~~~~Lk~~l~~f~~~~f~~~~~~r~rpsyFPfTeP 202 (294) T 2rhq_A 134 KIICPGKVYRRDSDDA---TH----SHQFTQIEGLVVDKNI----KMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEP 202 (294) T ss_dssp EEEEEEEEECCCCCBT---TB----CSEEEEEEEEEEESSC----CHHHHHHHHHHHHHHHHCTTCCEEEEECCBTTEEE T ss_pred EEEECCCEEECCCCCH---HH----CCEEEEEEEEEECCCC----CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 8984684772687873---44----2222230159964787----77664437889999870677458974465854588 Q ss_pred HEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 402410110100--------4833237531021007645326847338998410104200432289999999 Q gi|254780680|r 332 CKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430) Q Consensus 332 ~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430) +...|+..+.+. .+.|.||.-|.-.--=.-+..+| |++. -+.|+. |+-+-|+..- T Consensus 203 s~Evdv~~~~~~g~~~~v~~~~~WlEi~G~Gmv~P~VL~~~Gi---d~~~-~~G~Af-----GlGlERlAMl 265 (294) T 2rhq_A 203 SVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGF---DSNE-YSGFAF-----GMGPDRIAML 265 (294) T ss_dssp EEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTC---CTTT-CEEEEE-----EECHHHHHHH T ss_pred CCEEEEEEECCCCCCCEECCCCCCEEEEEECCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHHHH T ss_conf 6226777620489874140588746886303427899997299---9677-879998-----6338899999 No 34 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.58 E-value=0.00023 Score=51.50 Aligned_cols=181 Identities=10% Similarity=0.088 Sum_probs=104.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH---HHCCEECCCCCCHHHHHHHHHCCCHHHHC Q ss_conf 999999999862232032021235620278898655142247677643---10002313454114544534205955504 Q gi|254780680|r 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLP 251 (430) Q Consensus 175 e~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~---~d~l~Li~TaEvpL~~~~~~~~l~~~~LP 251 (430) +..+..+.+-..+...||.++.+..++.++....- ++ .....+.. ..+.-+-=|+=.|-.-.......+....| T Consensus 148 ~~~~~~~k~r~~l~~~G~~EVitySfvs~~~~~~l--~~-~~~~i~l~NPisSe~svLRThlspgll~~l~~N~~r~~~p 224 (665) T 2odr_A 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (665) T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 56766665312221046124542022362443202--56-5552002585531355648887268999999998579998 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC-CCH Q ss_conf 2088532210788433554343212222102002121278650145789899999999998410675303780117-844 Q gi|254780680|r 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL-GFS 330 (430) Q Consensus 252 ik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl-g~~ 330 (430) +|+...++|||+|+.. |.. ...+|+-+|-+.+-+ .--+..+....+.+++.|+.+---+..-...- -.- T Consensus 225 lrlFEiGrVFR~D~~~---D~t---Hl~~fhQleGlvvg~----~vdf~DLKg~le~lL~~lg~~~vkfr~~~s~~Pf~h 294 (665) T 2odr_A 225 FKLFSIDRCFRREQKE---DKS---HLMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT 294 (665) T ss_dssp EEEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBC T ss_pred EEEEEEEEEECCCCCC---CCC---CCCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC T ss_conf 5899777887478755---465---586114899999867----567899999999999996788718996577789989 Q ss_pred HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 34024101101004833237531021007645326847 Q gi|254780680|r 331 ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 331 a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) -++.-|+++|-|..+.|.||..|.-.----.+.++|.| T Consensus 295 Pg~eaeV~~~~~k~~~WlEIgg~G~vhP~VLk~~GId~ 332 (665) T 2odr_A 295 PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDV 332 (665) T ss_dssp TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCS T ss_pred CCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCC T ss_conf 94058999994569839999924430799998769798 No 35 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Probab=97.50 E-value=0.00048 Score=49.17 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=73.3 Q ss_pred HCCCHHHHCCEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHC Q ss_conf 205955504208853221078843-35543432122221020021212786501457898999999999984106-7530 Q gi|254780680|r 243 EIIESKSLPLRFTTLAPSFRSEAG-SAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVV 320 (430) Q Consensus 243 ~~l~~~~LPik~~~~s~cfR~EaG-s~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv 320 (430) ...+....|+|+.+.++|||+|+- .+ | +.++|+.+|.+++-+ .--+..+....+.+++.|+.. .|+- T Consensus 209 ~l~e~~~~Pir~~s~GrVyRrD~i~D~---t----H~~~FhQ~Eglvvd~----~vt~~dLK~~L~~f~~~~~~~~~k~R 277 (549) T 2du7_A 209 SLIKKRKLPLKLFSIDRCFRREQREDR---S----HLMSYHSASCVVVGE----DVSVDDGKVVAEGLLAQFGFTKFKFK 277 (549) T ss_dssp TTTTTSCSSEEEEEEEEECCCCSSCSS---S----CCSCEEEEEEEEECT----TCCHHHHHHHHHHHHGGGTCCCCCCE T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCH---H----HCCCCEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 998527998056336654445555642---1----178773777689607----87899999999999999779883898 Q ss_pred CCCCH-HCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 37801-1784434024101101004833237531021007645326847 Q gi|254780680|r 321 SLCTG-DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 321 ~~~sg-dlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) -.++- ---.| +-..|+.++.|..+.|.||.-|.-..----+..+|-| T Consensus 278 ~~~syFPfTeP-s~EveV~~~~~~~g~WlEIlGcGmv~P~VL~~~Gid~ 325 (549) T 2du7_A 278 PDEKKSKYYTP-ETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDV 325 (549) T ss_dssp ECTTCCTTBCT-TTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCS T ss_pred ECCCCCCCCCC-CEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCC T ss_conf 78888899999-6578999970889818999578477889998569798 No 36 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.39 E-value=0.00045 Score=49.37 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=103.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH---H---HHHCCEECCCCCCHHHHHHHHHCCCH Q ss_conf 99999999998622320320212356202788986551422476776---4---31000231345411454453420595 Q gi|254780680|r 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF---C---TTDGRWLIPTSEVSLTNLYSHEIIES 247 (430) Q Consensus 174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y---~---~~d~l~Li~TaEvpL~~~~~~~~l~~ 247 (430) ++..+..+-+-..+...||.++....++.++.. .++.+..+ . +..++-+.=|+=.|-.........+. T Consensus 147 ~e~~~~~~k~r~~l~~~G~~EvitySfvd~~~~------~~~~~~~~p~~l~NPisse~sVLRThttpGlL~~l~~n~~r 220 (701) T 2odr_C 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMG------LKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNK 220 (701) T ss_dssp -------------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH------HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 356667665301121034102432023472332------00256556200258553014561768746699999999857 Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC Q ss_conf 55042088532210788433554343212222102002121278650145789899999999998410675303780117 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL 327 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl 327 (430) ...|+|+...++|||+|+.. |...+ .+|+.+|-+.+-. .--+..+....+.+++.|+++---+..-...- T Consensus 221 ~~~piRlFeiGrVFR~D~i~---DatHl---~~FhQ~EGlvvg~----~Vdf~DLKgiLe~lL~~Lg~~~vkfr~~~s~~ 290 (701) T 2odr_C 221 KPLPFKLFSIDRCFRREQKE---DKSHL---MTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKS 290 (701) T ss_dssp SCSCEEEEEEEEEECCCSCC---CSSCC---SEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCC T ss_pred CCCCEEEEEEEEEEECCCCC---CCCCC---CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 99984999876667257624---25578---4246789999858----86899999999999999678772999657788 Q ss_pred C-CHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCE Q ss_conf 8-443402410110100483323753102100764532684 Q gi|254780680|r 328 G-FSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSR 367 (430) Q Consensus 328 g-~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~ir 367 (430) . .--++..|+.+|.|..+.|.||..|.-.--=.-+.++|. T Consensus 291 Pf~hPg~eaeV~~~~~~~~~WlEIgg~GmvhP~VL~~~GId 331 (701) T 2odr_C 291 KYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGID 331 (701) T ss_dssp TTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCC T ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCC T ss_conf 99899135899999465994899965754079999876979 No 37 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.31 E-value=0.00072 Score=47.90 Aligned_cols=182 Identities=11% Similarity=0.101 Sum_probs=104.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH---HHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 999999999986223203202123562027889865514224767764---31000231345411454453420595550 Q gi|254780680|r 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC---TTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~---~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) ++.-+-.+.+...+...||.++.+-.++..+...-- ++ ....++. +..++-+.-|+=.|-.--......+.... T Consensus 147 ~~~~~~~~k~r~~l~~~G~~Evitysfv~~~~~~~~--~~-~~~~v~l~NPisSe~~vLRTh~~~gll~~l~~n~~r~~~ 223 (648) T 2odr_B 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223 (648) T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 356666655302222034000321023463443202--56-555211358553235565887746899999999857999 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCC-C Q ss_conf 420885322107884335543432122221020021212786501457898999999999984106753037801178-4 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLG-F 329 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg-~ 329 (430) |+|+...++|||+++.. |.. +..+|+-+|-+.+-. .--+..+....+.+++.|+++---+..-...-. + T Consensus 224 pirlFEiGrVFR~D~~~---D~t---H~~~fhQleGlivg~----~vdf~dLKg~le~lL~~Lg~~~~k~r~~~s~~Pf~ 293 (648) T 2odr_B 224 PFKLFSIDRCFRREQKE---DKS---HLMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY 293 (648) T ss_dssp CEEEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTB T ss_pred CEEEEEEEEEECCCCCC---CCC---CCCCEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC T ss_conf 83899877787378744---243---576200478999778----76889999999999999678873899656778998 Q ss_pred HHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 434024101101004833237531021007645326847 Q gi|254780680|r 330 SACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 330 ~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) --++..||++|.|..+.|.||..|.-..-=-.+.++|.| T Consensus 294 hPg~ea~V~~~~~~~~~WlEIgg~G~vHP~VLk~~GId~ 332 (648) T 2odr_B 294 TPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDV 332 (648) T ss_dssp CTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCS T ss_pred CCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCC T ss_conf 991158999981679848999806531799998669698 No 38 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.20 E-value=0.00083 Score=47.43 Aligned_cols=169 Identities=11% Similarity=0.088 Sum_probs=98.1 Q ss_pred HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH---HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCC Q ss_conf 232032021235620278898655142247677643---10002313454114544534205955504208853221078 Q gi|254780680|r 187 TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRS 263 (430) Q Consensus 187 ~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~---~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~ 263 (430) +...||.++.+-.++.++...-- ++ .....+.. ..++-+.=|+=.|-..-......+....|+|+...++|||+ T Consensus 160 l~~~G~~EvitySFvs~~~~~~l--~~-~~~~i~L~NPisse~svLRThtspgll~~l~~n~~r~~~piRlFEiGrVFR~ 236 (685) T 2odr_D 160 DGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRR 236 (685) T ss_dssp ---------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECC T ss_pred HHCCCCEEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEC T ss_conf 10245102442113473454321--56-6562002585520255758877467999999998479998489964677705 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC-HHHEEEEEEEECC Q ss_conf 843355434321222210200212127865014578989999999999841067530378011784-4340241011010 Q gi|254780680|r 264 EAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF-SACKTYDLEVWLA 342 (430) Q Consensus 264 EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~-~a~~~~DiE~w~P 342 (430) |..+ |... ..+|+.+|-+.+-. .--+..+-...+.+++.|+++---+..-...-.+ --++.-|+++|-| T Consensus 237 D~i~---DatH---l~efhQleGlivg~----~Vdf~DLKgiLE~lL~~Lg~~~vkfr~~~s~~Pf~hPg~eaeV~~~~~ 306 (685) T 2odr_D 237 EQKE---DKSH---LMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHP 306 (685) T ss_dssp CSCC---CSSC---CSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEET T ss_pred CCCC---CCCC---CCCEEEEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECC T ss_conf 7754---4545---76314589999967----747999999999999986788739996667788879950279999806 Q ss_pred CCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 04833237531021007645326847 Q gi|254780680|r 343 GQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 343 ~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) ..+.|.||..|.-.--=..+.++|.| T Consensus 307 ~~~~WlEIgg~G~vhP~VLk~~GId~ 332 (685) T 2odr_D 307 KLKEWLEVATFGVYSPVALSKYGIDV 332 (685) T ss_dssp TTTEEEEEEEEEEBCHHHHHHTTCCS T ss_pred CCCEEEEEEECCCCCHHHHHHCCCCC T ss_conf 79838999806650799998769798 No 39 >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Probab=97.07 E-value=0.0035 Score=42.81 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=97.4 Q ss_pred HHHHHHHHHHHCCCCEEH-HHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--------------------------- Q ss_conf 999998622320320212-3562027889865514224-----7677643100--------------------------- Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVS-APLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--------------------------- 225 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~-~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--------------------------- 225 (430) ++..-+... .-||+++. .|.++...=-+-+=+.|.+ ..|.|.+++. T Consensus 231 ~~~ir~if~-~mGF~E~~~~~~Ves~fwNFDaLf~PqdHPaRd~~DTfYl~~~~~~~~~~~d~~~~v~~~h~~g~~~~~g 309 (508) T 3l4g_A 231 RSQFRQIFL-EMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQG 309 (508) T ss_dssp HHHHHHHHH-HTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTBCC T ss_pred HHHHHHHHH-HCCCEEECCCCEEEECCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 999999998-6898873589815620131353348745898873686885686433446289998877664127766545 Q ss_pred -----------CEECCCCCCHHHHHHHHHCCC-HHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf -----------023134541145445342059-55504208853221078843355434321222210200212127865 Q gi|254780680|r 226 -----------RWLIPTSEVSLTNLYSHEIIE-SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE 293 (430) Q Consensus 226 -----------l~Li~TaEvpL~~~~~~~~l~-~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe 293 (430) ..+.-|.--++..-+..+... ...-|+|+++..+|||+|.-.+ |+ .++|+-+|-+++... T Consensus 310 ~~~~~~~~~~~~~vLRtHtt~~~~r~l~~~~~~~~~~p~k~f~i~rvfR~e~~D~---tH----~~~fhQ~eg~v~~~~- 381 (508) T 3l4g_A 310 YKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA---TH----LAEFHQIEGVVADHG- 381 (508) T ss_dssp CCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS---SS----CSEEEEEEEEEEEES- T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC---CC----CCCCCCCCCEEECCC- T ss_conf 4444343332233445788721099999886358989804524555234677867---65----776530311462278- Q ss_pred CHHHHHHHHHHHHHHHHHHHCC-HHHHCCCCCHHCCCH-HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC Q ss_conf 0145789899999999998410-675303780117844-340241011010048332375310210076453268 Q gi|254780680|r 294 DSFTEHERMLSCAEEILKRLDL-HYRVVSLCTGDLGFS-ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS 366 (430) Q Consensus 294 ~S~~~~e~~~~~~~~i~~~L~l-pyRvv~~~sgdlg~~-a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i 366 (430) --+..+....++++..++. .+|.. |+- || ..=.+-+++|.|+.+.|.||.-|.-.--=--+.+++ T Consensus 382 ---~~~~~L~~~l~~~~~~lg~~~vR~~--paY---fPfTePS~Ev~v~~~g~~~WlEv~g~G~~rpevL~~~Gi 448 (508) T 3l4g_A 382 ---LTLGHLMGVLREFFTKLGITQLRFK--PAY---NPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGL 448 (508) T ss_dssp ---CCHHHHHHHHHHHHHTTTCCCCEEE--ECC---CTTCSSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTC T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEC--CCC---CCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHCCC T ss_conf ---5699999999999997399648706--898---999998089999838999748982572577999986698 No 40 >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Probab=97.05 E-value=0.00071 Score=47.92 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=66.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431000231345411454453420595550 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) ..++--++++++-++ +.++||++|.||.|.....-.+... |.-.....+.+.||.-..|..+- ..+- ..+ T Consensus 175 ~~~~Rs~i~~~iR~f-l~~~gFiEVeTP~L~~~~~e~~a~~---F~~~~~~~~~~~yL~qSpql~~q-----~l~~-~g~ 244 (521) T 3bju_A 175 KFIIRSKIITYIRSF-LDELGFLEIETPMMNIIPGGAVAKP---FITYHNELDMNLYMRIAPELYHK-----MLVV-GGI 244 (521) T ss_dssp HHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCCSSSCCC---CEEEETTTTEEEEECSCSHHHHH-----HHHH-TTC T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCC---CEEECCCCCCCHHCCCHHHHHHH-----HHHH-CCC T ss_conf 999999999999986-2359859997774200136665665---00002347831212604799999-----9996-766 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 4208853221078843355434321222210200212127865014578989999999999 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~ 311 (430) =|+..++||||.|- .+|+ +.-+|+.+|+.. +...++.++..++++++ T Consensus 245 -~rVfeIg~~FRaE~----~~tr---H~pEFtmlE~e~------af~d~~d~m~~~e~li~ 291 (521) T 3bju_A 245 -DRVYEIGRQFRNEG----IDLT---HNPEFTTCEFYM------AYADYHDLMEITEKMVS 291 (521) T ss_dssp -CEEEEEEEEECCSC----CBTT---BCSEEEEEEEEE------ETCCHHHHHHHHHHHHH T ss_pred -CCCEEEHHHHCCCC----CCCC---CCCCEECCEEEE------ECCCHHHHHHHHHHHHH T ss_conf -30201133413776----5347---787663030056------04667888877999999 No 41 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Probab=97.01 E-value=0.00074 Score=47.82 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=77.8 Q ss_pred HHHHHHHCCCCCEEEC--CHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH----HHHCC Q ss_conf 0011222167530105--64889999999999986223203202123562027889865514224767764----31000 Q gi|254780680|r 153 FDRATKLSGARFSVLT--GHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC----TTDGR 226 (430) Q Consensus 153 fe~a~kvsGsrF~~Lk--g~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~----~~d~l 226 (430) ..+|+-++++-.+=-. -+.-++--++++.+-++ ..++||++|.||.|+...+ +|++-.| |+-+.+. -+... T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~L~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~-~ga~~~p-f~~~~~~~~~~~~~~~ 91 (345) T 3a5y_A 15 VPRGSHMSETASWQPSASIPNLLKRAAIMAEIRRF-FADRGVLEVETPCMSQATV-TDIHLVP-FETRFVGPGHSQGMNL 91 (345) T ss_dssp ----------CTTSCSSCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCC-CCTTCCC-CEEEECCSTTSCCEEE T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCC-EEEEECCCCCCCCCCE T ss_conf 45766787677768726599999999999999999-9888978987986478898-7645661-6887236666678577 Q ss_pred EECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 23134541145445342059555042088532210788433554343212222102002121278650145789899999 Q gi|254780680|r 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCA 306 (430) Q Consensus 227 ~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~ 306 (430) ||.-..|..+ ...+. .-+ =|+..++||||.|- .++ .+.-+|+.+|.... ..-++++.+.+ T Consensus 92 yL~~SpQl~l-----q~l~~-~g~-~rVf~I~p~FR~E~----~~~---~H~~EFtmlE~e~a------~~d~~dlm~~~ 151 (345) T 3a5y_A 92 WLMTSPEYHM-----KRLLV-AGC-GPVFQLCRSFRNEE----MGR---YHNPEFTMLEWYRP------HYDMYRLMNEV 151 (345) T ss_dssp EECSCSHHHH-----HHHHH-TTC-CSEEEEEEEECCCC----CBT---TBCSEEEEEEEEEE------TCCHHHHHHHH T ss_pred EECCCHHHHH-----HHHHH-CCC-CCCEEEECCCCCCC----CCC---CCCCCEEEEEEEEC------CCCHHHHHHHH T ss_conf 7554879999-----99996-799-87279834532699----898---85763455344324------79999999999 Q ss_pred HHHHHHH Q ss_conf 9999984 Q gi|254780680|r 307 EEILKRL 313 (430) Q Consensus 307 ~~i~~~L 313 (430) |++++.+ T Consensus 152 E~li~~v 158 (345) T 3a5y_A 152 DDLLQQV 158 (345) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 42 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Probab=96.94 E-value=0.0039 Score=42.41 Aligned_cols=195 Identities=17% Similarity=0.202 Sum_probs=112.4 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--------------CEECCCCCCHHHHH Q ss_conf 9999986223203202123562027889865514224-----7677643100--------------02313454114544 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--------------RWLIPTSEVSLTNL 239 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--------------l~Li~TaEvpL~~~ 239 (430) ++-..|+. ..-||+.+.-|.+-...--+.+=+.|.. ..|.|+++++ ..|.-|---|+..- T Consensus 107 ~~eI~dIF-~~mGF~v~~GpeIE~d~~NFdaLn~P~dHPARd~~DTFyl~~~~~~~~~~~~~~~~~~~lLRTHTS~~q~r 185 (350) T 1b7y_A 107 ERELVEIF-RALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVR 185 (350) T ss_dssp HHHHHHHH-HTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHHH T ss_pred HHHHHHHH-HHCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHH T ss_conf 99999999-73694450387535566668876799755103356438970555345787520111031504468688999 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 53420595550420885322107884335543432122221020021212786501457898999999999984106753 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRv 319 (430) ++ ....-|+|+.+.++|||+++=.+ |+ .++|+-+|-+++-.. --+..+....+++++.+.-+=.. T Consensus 186 ~m----~~~~pp~r~i~~GrVyR~d~~D~---tH----~p~FhQ~Egl~vd~~----it~~~Lk~~l~~~~~~~f~~~~~ 250 (350) T 1b7y_A 186 YM----VAHTPPFRIVVPGRVFRFEQTDA---TH----EAVFHQLEGLVVGEG----IAMAHLKGAIYELAQALFGPDSK 250 (350) T ss_dssp HH----HHCCSSEEEEEEEEEECCCCCCS---SC----CSEEEEEEEEEEETT----CCHHHHHHHHHHHHHHHSCSSCC T ss_pred HH----HCCCCCEEEEECCCCCCCCCCCC---CC----CCCCEEEEEEECCCC----CCHHHHHHHHHHHHHHHCCCCCE T ss_conf 98----62499816983676546899887---55----875468899981300----22798899999999974189864 Q ss_pred CCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE----CCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 03780117844340241011010048332375310210076453268473----3899841010420043228999999 Q gi|254780680|r 320 VSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR----DPNSKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 320 v~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~----~~~~~~~~~~htlNgt~~A~~R~l~ 394 (430) +..-.+=-.|+. =.+.+++|.|..++|.||.-|.-.--=.=+..+|... ++..+ .+|--+=|+-+-|+.. T Consensus 251 ~R~rp~yFPfTe-Ps~Evdi~~~~~~~WiEi~G~Gmv~p~vl~~~g~~~~~~g~~~~~~----~~~g~AfG~GleRlaM 324 (350) T 1b7y_A 251 VRFQPVYFPFVE-PGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYR----GVTGFAFGLGVERLAM 324 (350) T ss_dssp EEEEECCBTTEE-EEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCT----TCEEEEEEEEHHHHHH T ss_pred EEECCCCCCCCC-CCCEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCC----CCEEEEEEECHHHHHH T ss_conf 875788789888-8734999968799568980563777899975589766517885456----6759998643889999 No 43 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Probab=96.81 E-value=0.0028 Score=43.48 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=73.0 Q ss_pred HHHCCCHHHHCCEEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH--- Q ss_conf 342059555042088532210788-4335543432122221020021212786501457898999999999984106--- Q gi|254780680|r 241 SHEIIESKSLPLRFTTLAPSFRSE-AGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH--- 316 (430) Q Consensus 241 ~~~~l~~~~LPik~~~~s~cfR~E-aGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp--- 316 (430) ...+......|+|+++.++|||+| |-.+ | +.++|+-+|-+++-+ .--+..+....+.+++.|+.+ T Consensus 195 lr~l~~~~~~Piri~s~GrVyRrD~aiDa---t----H~~~FhQvEGlvVd~----~vs~~dLkg~L~~fl~~~f~~~~k 263 (534) T 2du3_A 195 LSHIADKLPLPIKLFSIDRCFRREQGEDA---T----RLYTYFSASCVLVDE----ELSVDDGKAVAEALLRQFGFENFR 263 (534) T ss_dssp HHTTTTTSCSSEEEEEEEEEECCCTTCSS---S----CCSEEEEEEEEEECS----SCCHHHHHHHHHHHHGGGTCCEEE T ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCC---C----CCCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCE T ss_conf 99997368998589615622235655654---3----174105710488669----888999999999999997687757 Q ss_pred HHHCCCCCH-HCCCHHHEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 753037801-178443402410110100--------4833237531021007645326847 Q gi|254780680|r 317 YRVVSLCTG-DLGFSACKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 317 yRvv~~~sg-dlg~~a~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) +|.. ++- ---. -+-..|+.++.|+ .+.|.||.-|.-..----+.++|.| T Consensus 264 ~R~r--psyFPFte-Ps~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GIdy 321 (534) T 2du3_A 264 FRKD--EKRSKYYI-PDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY 321 (534) T ss_dssp EEEC--TTCCTTBC-TTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS T ss_pred EEEC--CCCCCCCC-CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCC T ss_conf 9746--88799999-9534799995058865555758966999677466878886469898 No 44 >1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Probab=96.80 E-value=0.0012 Score=46.30 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=65.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCH-HHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 8899999999999862232032021235620278898655142-247677643100023134541145445342059555 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIP-KFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp-~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) .-++--.+++.+-++ ..++||++|.||.|.. +-.|.+-.| .+.... -+.+.||.-..+. |....+- .. T Consensus 182 i~r~Rs~i~~~iR~f-~~~~gFiEVeTPiL~~--~~~ga~~~~~~~~~~~--~~~~~yL~qSpql-----~~q~lm~-~g 250 (504) T 1e1o_A 182 TFVVRSKILAAIRQF-MVARGFMEVETPMMQV--IPGGASARPFITHHNA--LDLDMYLRIAPEL-----YLKRLVV-GG 250 (504) T ss_dssp HHHHHHHHHHHHHHH-HHTTTCEECCCCSEES--SCCSSCCCCCEEEETT--TTEEEEECSCSHH-----HHHHHHH-HT T ss_pred HHHHHHHHHHHHHHH-HHHCCCEEEEECCEEE--ECCCCCCCCEECCCCC--CCCCCCCCCCHHH-----HHHHHHH-HC T ss_conf 999999999999999-9857967986031254--1487667640005557--8967211558689-----9999986-03 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0420885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) + =|+..++||||.| ++ ++| |.-+|+-+|+.. |+..++.+....|++++.+ T Consensus 251 ~-~rvfei~~~FR~E-~~---~tr---H~~EFt~le~e~------af~d~~d~m~~~E~li~~i 300 (504) T 1e1o_A 251 F-ERVFEINRNFRNE-GI---SVR---HNPEFTMMELYM------AYADYHDLIELTESLFRTL 300 (504) T ss_dssp C-CEEEEEEEEECCC-CC---CC----CCSEEEEEEEEE------ESCCHHHHHHHHHHHHHHH T ss_pred C-CHHEEECCEECCC-CC---CCC---CCCCEEEEEEEE------HHCCHHHHHHHHHHHHHHH T ss_conf 1-1222553015477-67---766---896355533100------2077898999899999999 No 45 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Probab=96.74 E-value=0.0064 Score=40.82 Aligned_cols=115 Identities=16% Similarity=0.302 Sum_probs=65.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431000231345411454453420595550 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) .-++--++++..-++. .++||++|-||.|+.... +|.+.. |.-. ..+.+.||.-..|. |+...+.. .+ T Consensus 243 i~r~Rs~i~~~iR~ff-~~~gFlEVeTPiL~~~~~-eg~~~~--f~~~--~~~~~~yL~~SPel-----~~k~ll~~-g~ 310 (548) T 3i7f_A 243 IFRIQSACCGLFREFL-TSQKFVEIHTPKLIGCSS-EGGSNI--FEVK--YFDRKAYLAQSPQL-----YKQMAIMG-DF 310 (548) T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSBC------------------------CCBCSCTHH-----HHHHHHTT-TC T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEECCEECCCCC-CCCCCC--CCCC--CCCHHHHHHHHHHH-----HHHHHHHC-CC T ss_conf 9999999999999999-977998988872123676-765560--0011--11126676332678-----99999862-66 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCC-CCCHHHHHHHHHH Q ss_conf 42088532210788433554343212222102002121-278-6501457898999 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITR-EEDSFTEHERMLS 304 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~-pe~S~~~~e~~~~ 304 (430) =|+..+++|||.|-.. | -....+|+-+|... |.+ -++-....++|+. T Consensus 311 -~rVfeI~~~FR~E~~~----t--~rHlpEFT~LE~e~a~~~~~~d~m~~~e~l~~ 359 (548) T 3i7f_A 311 -RKVFEVGPVFRAENSN----T--RRHLTEFEGLDIEMEIVENYHECIDVMEKLFT 359 (548) T ss_dssp -CEEEEEEEECCCSCCC----S--SSCCSCEEEEEEEEECSSCTHHHHHHHHHHHH T ss_pred -CCCCCCCEEEECCCCC----C--CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHH T ss_conf -3234434056645455----5--55687515501007789889999999999999 No 46 >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Probab=96.73 E-value=0.0013 Score=46.07 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=65.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) ++.-.+++.+-++ +.++||++|.||.|.....-.|...+.. .....+...||....| +|....+ -.-+ = T Consensus 175 ~~Rs~i~~~iR~f-l~~~gFlEVeTP~L~~~~~~~~a~~f~~---~~~~~~~~~~L~~Spq-----l~~k~lm-v~g~-~ 243 (493) T 3a74_A 175 ITRSLIIQSMRRY-LDSHGYLEVETPMMHAVAGGAAARPFIT---HHNALDMTLYMRIAIE-----LHLKRLI-VGGL-E 243 (493) T ss_dssp HHHHHHHHHHHHH-HHHTTCEECCCCSEESSCCSSSSCCCEE---EETTTTEEEEECSCSH-----HHHHHHH-HTTC-C T ss_pred HHHHHHHHHHHHH-HHHCCCCEECCCCCCEECCCCCCCCCCC---CCCCCCCCCCCCCCCC-----HHHHHHH-HHHH-C T ss_conf 9999999999999-9865973331776410037866655201---5446886743367821-----5789888-7410-5 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEE-ECCCCCCHHHHHHHHHHH Q ss_conf 08853221078843355434321222210200212-127865014578989999 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV-SITREEDSFTEHERMLSC 305 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~-~~~~pe~S~~~~e~~~~~ 305 (430) ||..++||||.|- .++ -|+-+|+-+|+. +|++-++-....|.|+.. T Consensus 244 rvfqI~~~FR~E~----~~~---~h~pEFT~le~e~af~d~~d~m~~~E~l~~~ 290 (493) T 3a74_A 244 KVYEIGRVFRNEG----IST---RHNPEFTMLELYEAYADFRDIMKLTENLIAH 290 (493) T ss_dssp EEEEEEEEECCCC----CBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH T ss_pred CEEEEECEECCCC----CCC---CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 4789700035787----887---8860668778887633798899889999999 No 47 >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Probab=96.47 E-value=0.0014 Score=45.82 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=74.2 Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEE Q ss_conf 99999986223203202123562027889865514224767764310002313454114544534205955504208853 Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTL 257 (430) Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~ 257 (430) +.+|.- .+.++||.|+.||.+-..+...+-.++ | +.+..++|-|=--+|++-+++.. ..+.|+|++-. T Consensus 9 ~~s~~~--~~~~~Gy~~i~tP~lE~~e~~~~~~f~----D---~~G~~l~LRpD~T~~iaR~~~~~---~~~~~~k~~Y~ 76 (275) T 1usy_A 9 VFSFYS--KATKKGFSPFFVPALEKAEEPAGNFFL----D---RKGNLFSIREDFTKTVLNHRKRY---SPDSQIKVWYA 76 (275) T ss_dssp HHHHHH--HHHHTTCEECCCCSEEECSSCCSSCEE----E---TTSCEEEECCCHHHHHHHHHTTC---TTCCCEEEECC T ss_pred HHHHHH--HHHHCCCCEEECCCEEEEEECCCCEEE----C---CCCCEEEECCCCCHHHHHHHHHC---CCCCCEEEEEE T ss_conf 999999--999759816578751000100166668----6---99999997887809999999963---99998169997 Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 22107884335543432122221020021212786501457898999999999984106 Q gi|254780680|r 258 APSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 258 s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) +++||.+.+. .-..+|+. +|+|.-. |...--|++..+-++++.|++. T Consensus 77 g~vfR~~~~~-------~re~~Q~G-~E~iG~~----~~~aDaEvi~l~~~~l~~l~~~ 123 (275) T 1usy_A 77 DFVYRYSGSD-------LVAEYQLG-LEKVPRN----SLDDSLEVLEIIVESASEFFEG 123 (275) T ss_dssp EEEEEEETTE-------EEEEEEEE-EEEESCC----SHHHHHHHHHHHHHHHHHHCCS T ss_pred ECEEECCCCC-------CCCCEEEE-EEEECCC----CCHHHHHHHHHHHHHHHHHCCC T ss_conf 0778727886-------55416965-9985898----8777999999999999983888 No 48 >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Probab=96.47 E-value=0.0015 Score=45.50 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431000231345411454453420595550 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) .-++-..+++.+-++ +.++||.+|.||.|+....-.+.-.++. . .-+.++||.-..|. |..-.+. -+ T Consensus 134 ~~r~Rs~i~~~iR~~-l~~~gF~EVeTP~L~~~~~~g~a~~~~~---~--~~~~~~~L~~spql-----~~k~li~--G~ 200 (434) T 1x54_A 134 IMKVKETLIMAAREW-LLKDGWHEVFPPILVTGAVEGGATLFKL---K--YFDKYAYLSQSAQL-----YLEAAIF--GL 200 (434) T ss_dssp HHHHHHHHHHHHHHH-HHHTTCEECCCCSEESCCSSCGGGCCEE---E--ETTEEEEECSCSHH-----HHHHHHH--HH T ss_pred HHHHHHHHHHHHHHH-HHHCCEEEEEECEEEEECCCCCCCCCEE---C--CCCCCHHHCCCHHH-----HHHHHHC--CC T ss_conf 898999999999998-7627849985010255214566666310---1--25603342143666-----6666402--53 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC-CCCCCHHHHHHHHHHH Q ss_conf 420885322107884335543432122221020021212-7865014578989999 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFTEHERMLSC 305 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~-~~pe~S~~~~e~~~~~ 305 (430) =|+..+++|||.|-+. + --...+|+-+|.... .+-++-....|+|+.. T Consensus 201 -~rvfei~~~FR~E~~~----~--~rH~pEFt~lE~y~a~~d~~~~m~~~e~li~~ 249 (434) T 1x54_A 201 -EKVWSLTPSFRAEKSR----T--RRHLTEFWHLELEAAWMDLWDIMKVEEELVSY 249 (434) T ss_dssp -SEEEEEEEEECCCCCC----C--SSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH T ss_pred -CCEEECCCEECCCCCC----C--CCCCCCEEEECHHHHCCCHHHHHHHHHHHHHH T ss_conf -3115424302367666----8--66676534211254238899999999999999 No 49 >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} Probab=96.37 E-value=0.0037 Score=42.57 Aligned_cols=112 Identities=18% Similarity=0.342 Sum_probs=63.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHC Q ss_conf 89999999999986223203202123562027889865514224767764310002313454114544534205955504 Q gi|254780680|r 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLP 251 (430) Q Consensus 172 A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LP 251 (430) -++--++++..-++ ..++||++|.||.|+...+ +|.+.. |.- ..-+.+.||.-..| +| .+.+- .-++ T Consensus 134 ~r~Rs~i~~~iR~f-~~~~gf~EV~TP~L~~~~~-~g~a~~--f~~--~~~~~~~~L~~Spe-----l~-K~l~~-~g~~ 200 (429) T 1wyd_A 134 IKIQSLALKAFRET-LYKEGFIEIFTPKIIASAT-EGGAQL--FPV--IYFGKEAFLAQSPQ-----LY-KELMA-GVVE 200 (429) T ss_dssp HHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCS-STTCCC--CEE--EETTEEEEECSCCH-----HH-HHHHH-HHHS T ss_pred HHHHHHHHHHHHHH-HHHCCCEEECCCCCCCCCC-CCCCCC--CCE--EECCCCCEECCCHH-----HH-HHHHH-HHHC T ss_conf 99999999999987-7743855533864346667-642234--410--51597724303899-----88-88865-3110 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH Q ss_conf 2088532210788433554343212222102002121-278650145789899 Q gi|254780680|r 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML 303 (430) Q Consensus 252 ik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~ 303 (430) |+..+++|||.|-+. ++ ...-+|+.+|... +.+-++.....|.|+ T Consensus 201 -rvf~i~~~FR~E~~~----~~--rH~pEFtmlE~y~a~~d~~~~m~~~E~l~ 246 (429) T 1wyd_A 201 -RVFEVAPAWRAEESD----TP--FHLAEFISMDVEMAFADYNDVMQLLEKIL 246 (429) T ss_dssp -EEEEEEEEECCCCCC----SS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH T ss_pred -CEEEEECCCCCCCCC----CC--CCCCCCCCEEEEHHHHHHHHHHHHHHHHH T ss_conf -006750320036787----64--34566420220024455678899999999 No 50 >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Probab=96.34 E-value=0.0038 Score=42.54 Aligned_cols=206 Identities=14% Similarity=0.232 Sum_probs=96.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) ..-++.-++++.+-++ ..++||++|.||.|+... .+|.+.. |.-. ..+.+.||.-..|. |....+.. - T Consensus 176 ~i~r~Rs~i~~~iR~f-f~~~gFlEVeTPiL~~~~-~~g~~~~--f~~~--~~~~~~yL~~Spel-----~~k~l~~~-g 243 (487) T 1eov_A 176 AIFRIQAGVCELFREY-LATKKFTEVHTPKLLGAP-SEGGSSV--FEVT--YFKGKAYLAQSPQF-----NKQQLIVA-D 243 (487) T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSC-SSSSSCC--CEEE--ETTEEEEECSCTHH-----HHHHHHHT-T T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCHHHC--CCEE--ECCCCCHHHHHHHH-----HHHHHHHC-C T ss_conf 6785899999998731-014988999885424567-5203431--3300--02765303350699-----99998752-4 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCC Q ss_conf 042088532210788433554343212222102002121-2786501457898999999999984106753037801178 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLG 328 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg 328 (430) + =|+..++||||.|-.. +. -..-+|+.+|... |++ .+++|.+..++++..+--. +..-+..++- T Consensus 244 ~-~rvfei~~~FR~E~~~----t~--RHlpEFtmlE~e~af~~------~~~~i~~~~e~l~~~~~~~--~~~~~~~~~~ 308 (487) T 1eov_A 244 F-ERVYEIGPVFRAENSN----TH--RHMTEFTGLDMEMAFEE------HYHEVLDTLSELFVFIFSE--LPKRFAHEIE 308 (487) T ss_dssp C-CEEEEEEEEECCCCCC----CT--TCCSEEEEEEEEEECSS------CTHHHHHHHHHHHHHHHHH--HHHHCHHHHH T ss_pred C-CCCEEEECCEECCCCC----CC--CCCCCCEEEHHHHHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHH T ss_conf 5-5653763013056655----53--45633122013255678------8999999999999999999--8775455776 Q ss_pred CHHHEEEEEE-EECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 4434024101-101004833237531021007645326847338998410104200432289999999988346899838 Q gi|254780680|r 329 FSACKTYDLE-VWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407 (430) Q Consensus 329 ~~a~~~~DiE-~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i 407 (430) .- ...+.++ .-.|....|..++...-....++ .+.... .+ .-+ .-...+.+..+++.....+-.+ T Consensus 309 ~~-~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~--~~~~~~--~~------~~~---~~~~~~~l~~~~~~~~~~~~~~ 374 (487) T 1eov_A 309 LV-RKQYPVEEFKLPKDGKMVRLTYKEGIEMLRA--AGKEIG--DF------EDL---STENEKFLGKLVRDKYDTDFYI 374 (487) T ss_dssp HH-HHHSCCCCCCCCTTCCCEEEEHHHHHHHHHH--TTCCCC--TT------CCC---CHHHHHHHHHHHHHHSCCSEEE T ss_pred HH-HCCCCCCEEECCCCCCHHEEEHHHHHHHHHH--HHHHCC--CC------CCC---CHHHHHHHHHHHHHHCCCCCEE T ss_conf 53-1136641021035773320108767889987--654024--30------200---0356788999998750688578 Q ss_pred E--CCCCCCCC Q ss_conf 6--58222310 Q gi|254780680|r 408 T--IPTVLRPY 416 (430) Q Consensus 408 ~--iP~~L~py 416 (430) . .|..+.|+ T Consensus 375 v~~~P~~~~p~ 385 (487) T 1eov_A 375 LDKFPLEIRPF 385 (487) T ss_dssp EECCBGGGSCT T ss_pred EECCCCCCCCH T ss_conf 63482101802 No 51 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Probab=96.25 E-value=0.0039 Score=42.44 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=63.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431000231345411454453420595550 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) .-++--.+++.+-++ +.++||++|.||.|+.... +|.+... .-.. .+.+.||.-..|. |..-++ ..+ T Consensus 155 ~l~~Rs~i~~~iR~f-~~~~gF~EVeTP~L~~~~~-eg~~~~f--~~~~--~~~~~~L~~spql-----~kq~~~--~g~ 221 (456) T 3m4p_A 155 VLQLRSEIQWYFRKY-YHDNHFTEIQPPTIVKTQC-EGGSTLF--KLQY--FNEPAYLTQSSQL-----YLESVI--ASL 221 (456) T ss_dssp HHHHHHHHHHHHHHH-HHHTTCEECCCCSEEC-------CCCC--EEEE--TTEEEEECSCCHH-----HHHTTH--HHH T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEECCCEECCCCC-CCHHHCC--CCCC--CCHHHHCCCCHHH-----HHHHHH--HCC T ss_conf 999999999999862-0356368852976725466-4312135--4322--2111320387887-----512334--304 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHHH Q ss_conf 42088532210788433554343212222102002121-2786501457898999 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERMLS 304 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~~ 304 (430) -|+...++|||+|-+. +.| ...+|+-+|... +.+-++-.+..++|+. T Consensus 222 -~rvf~i~~~fR~E~~~---~~r---H~pEFt~lE~e~a~~d~~~~m~~~e~li~ 269 (456) T 3m4p_A 222 -GKSFCMLSSYRAEQSR---TVR---HLAEYLHLEAELPFISFEDLLNHLEDLVC 269 (456) T ss_dssp -SSEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEESCCHHHHHHHHHHHHH T ss_pred -CCEEEECCCEECCCCC---CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf -6505622403336653---111---54320110144435678878999999999 No 52 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Probab=95.78 E-value=0.0094 Score=39.59 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=61.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH---H--HHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCC Q ss_conf 88999999999998622320320212356202788---9--865514224767764310002313454114544534205 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA---M--YGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEII 245 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~---~--~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l 245 (430) .-++.-.+++.+-++. .++||++|.||.+-.... . .++|..| |.-+.| +.+.||.-..|. |+...+ T Consensus 14 il~~Rs~i~~~iR~ff-~~~~f~EV~tPil~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~L~~Spql-----~~k~~l 84 (294) T 1nnh_A 14 TLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEP-AEVEIY--GVKMRLTHSMIL-----HKQLAI 84 (294) T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCC-CEEEET--TEEEEECSCSHH-----HHHHHH T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCEEECCCCHHH-----HHHHHH T ss_conf 9999999999999999-9889999848734566777677655676635-635678--966751578888-----898998 Q ss_pred CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH Q ss_conf 9555042088532210788433554343212222102002121-278650145789899 Q gi|254780680|r 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML 303 (430) Q Consensus 246 ~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~ 303 (430) .. .+ =|+..++||||.|.+.. + +--..-+|+.+|... +++-++-....++|+ T Consensus 85 ~~-g~-~~vf~I~~~FR~E~~~~--~--~~rH~~EFtmLE~e~~~~d~~dlm~~~e~li 137 (294) T 1nnh_A 85 AM-GL-KKIFVLSPNIRLESRQK--D--DGRHAYEFTQLDFEVERAKMEDIMRLIERLV 137 (294) T ss_dssp HT-TC-CEEEEEEEEECCCCGGG--C--SSSCCSEEEEEEEEEETCCHHHHHHHHHHHH T ss_pred HH-HC-CCCEEEECEECCCCCCC--C--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 73-02-56446504564787888--8--7755400146505984001989999999999 No 53 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=95.76 E-value=0.054 Score=33.97 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999886444666667788877443100225 Q gi|254780680|r 73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNV 108 (430) Q Consensus 73 Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi 108 (430) +..+.+.|+..+.+++.++..+++++..+--.+.+. T Consensus 166 ie~qi~~Lq~~l~elq~kIq~LE~qI~q~~ek~~~~ 201 (464) T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSP 201 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999999999999998788750566 No 54 >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Probab=95.70 E-value=0.018 Score=37.55 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) +.-++--++++.+-++ +.++||++|.+|.|.....--|.-.+|. . ....++||.-..|..+ ...+-. - T Consensus 135 ~~~~~Rs~i~~~iR~f-l~~~gF~EVeTPiL~~~~~eg~a~~f~~---~--~~~~~~~L~~Spel~l-----k~l~~~-G 202 (438) T 3nem_A 135 AIFKIRSSVFKAVRDF-FHENGFIEIHTPKIIATATEGGTELFPM---K--YFEEDAFLAQSPQLYK-----QIMMAS-G 202 (438) T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCSSCSSSCCEE---E--ETTEEEEECSCSHHHH-----HHGGGT-T T ss_pred CEEHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCCCCC---C--CCCCCEEEECCHHHHH-----HHHHHC-C T ss_conf 2006889999999998-7547967997764424466655444663---1--3688753503856887-----887651-4 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEE Q ss_conf 042088532210788433554343212222-10200212 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELV 287 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~ 287 (430) + =|+..+++|||.|-. ++ -|.| +|.-+|.. T Consensus 203 ~-~rvfei~~~FR~E~~----~~---~rh~~ef~~~~~~ 233 (438) T 3nem_A 203 L-DRVYEIAPIFRAEEH----NT---TRHLNEAWSIDSE 233 (438) T ss_dssp C-CEEEEEEEEECCCSS----CC---TTCCSEEEEEEEE T ss_pred C-CCEEEEEEECCCCCC----CC---CCCCCCEEEEHHH T ss_conf 8-852897330144557----77---5544238870889 No 55 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=95.58 E-value=0.048 Score=34.32 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 799999999999998864446666677888774431002258 Q gi|254780680|r 68 SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP 109 (430) Q Consensus 68 ~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~ 109 (430) +.+..|.....++..+|+.+++++..+++.+........+++ T Consensus 168 ~qi~~Lq~~l~elq~kIq~LE~qI~q~~ek~~~~~~~~~~~~ 209 (464) T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSPCVASCNIP 209 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 999999999999999999999999878875056654455457 No 56 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Probab=95.49 E-value=0.0095 Score=39.56 Aligned_cols=120 Identities=14% Similarity=0.255 Sum_probs=64.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) ...++--++++.+-++ +.++||++|.||.|.... -+|.|.+ |.-..+.-+..+||.-..|..+ .. +--.. T Consensus 136 ~~~r~Rs~i~~~~r~~-l~~~gF~EV~TP~L~~~~-~ega~~~--f~~~~~~~~~~~~L~~Spqly~-----q~-l~~~g 205 (585) T 1c0a_A 136 QRLKTRAKITSLVRRF-MDDHGFLDIETPMLTKAT-PEGARDY--LVPSRVHKGKFYALPQSPQLFK-----QL-LMMSG 205 (585) T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCEECCCCSSBCCC-SSSSCCC--EEECSSSTTCEEECCSCSHHHH-----HH-HHHTT T ss_pred HHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCC-CCCCCCC--EEEEECCCCCCCCCCCCCHHHH-----HH-HHHHC T ss_conf 9999999999999999-987899899898546778-7656675--5425548775102787835888-----98-88606 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0420885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) + =|+..++||||.|-. +|+ |.-.|+-+|+.. |+.-++++....|+++..+ T Consensus 206 ~-~rVfeig~~FR~E~~----~t~---r~pEFt~le~e~------a~~~~~d~m~~~E~l~~~i 255 (585) T 1c0a_A 206 F-DRYYQIVKCFRDEDL----RAD---RQPEFTQIDVET------SFMTAPQVREVMEALVRHL 255 (585) T ss_dssp C-CEEEEEEEEECCCCC----BTT---BCSEEEEEEEEE------ESCCHHHHHHHHHHHHHHH T ss_pred C-CEEEEECCCCCCCCC----CCC---CCCCCCEEHHHH------HHHHHHHHHHHHHHHHHHH T ss_conf 6-616896442126888----886---686431008988------7766778999998999999 No 57 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Probab=95.41 E-value=0.019 Score=37.37 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=64.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH-HHHCCEECCCCCCHHHHHHHHHCCCH Q ss_conf 64889999999999986223203202123562027889865514224767764-31000231345411454453420595 Q gi|254780680|r 169 GHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC-TTDGRWLIPTSEVSLTNLYSHEIIES 247 (430) Q Consensus 169 g~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~-~~d~l~Li~TaEvpL~~~~~~~~l~~ 247 (430) .+..++--++++.+-++ +.++||++|.||.|... .-+|.|-+- -..+. .+..+||.-..|..+--+. . T Consensus 141 ~~~~r~Rs~i~~~~r~f-~~~~gF~eV~TPiLt~~-~~eGa~~f~---v~~~~~~~~~~~L~~Spql~~q~l~------~ 209 (580) T 1l0w_A 141 QENLRLRHRVIKAIWDF-LDREGFVQVETPFLTKS-TPEGARDFL---VPYRHEPGLFYALPQSPQLFKQMLM------V 209 (580) T ss_dssp HHHHHHHHHHHHHHHHH-HHHTTCEECCCCSSBCC-CSSSSCCCE---EECTTSTTEEEECCSCSHHHHHHHH------H T ss_pred HHHHHHHHHHHHHHHHH-HHHCCCEEEEEHHEECC-CCCCCCCCE---ECCCCCCCCCCCCCCCHHHHHHHHH------H T ss_conf 99999999999999999-98659779860011036-874467853---4622688834245658689999988------6 Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH Q ss_conf 55042088532210788433554343212222102002121-278650145789899 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML 303 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~ 303 (430) ..+ =|+..++||||.|-.. |+ |.-+|+.+|+.. |.+.++-....++|+ T Consensus 210 ~g~-~rvfei~~~FR~E~~~----t~---r~~EFt~le~e~a~~~~~~~m~~~e~~i 258 (580) T 1l0w_A 210 AGL-DRYFQIARCFRDEDLR----AD---RQPDFTQLDLEMSFVEVEDVLELNERLM 258 (580) T ss_dssp TTC-SEEEEEEEEECCCCCC----SS---CCSEEEEEEEEEESCCHHHHHHHHHHHH T ss_pred CCC-CCEEEEECCCCCCCCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 267-7258960342478888----87---4155542346652277999887668999 No 58 >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 Probab=95.01 E-value=0.09 Score=32.32 Aligned_cols=110 Identities=22% Similarity=0.356 Sum_probs=60.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) ++--++++.+-++ ..++||.+|.||.++... .+|.++. |.-+. .+.+.||.-..| +| .+.+- .-+ = T Consensus 126 ~~Rs~i~~~iR~f-~~~~gflEVeTP~l~~~~-~~~~~~~--f~~~~--~~~~~~L~~Spe-----l~-K~l~~-~g~-~ 191 (422) T 1n9w_A 126 KVQAALVRGFRRY-LDRQDFTEIFTPKVVRAG-AEGGSGL--FGVDY--FEKRAYLAQSPQ-----LY-KQIMV-GVF-E 191 (422) T ss_dssp HHHHHHHHHHHHH-HHHTTCEECCCC---------------------------------CH-----HH-HHHHH-HHH-S T ss_pred HHHHHHHHHHHHH-HHCCCCEECCCCCCCCCC-CCCCCCC--CCCCC--CCCCCCCCCCHH-----HH-HHHHH-CCC-C T ss_conf 7999999999766-532896713697123577-6667656--78765--688842430879-----98-77763-143-4 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-C-CCCCCHHHHHHHH Q ss_conf 088532210788433554343212222102002121-2-7865014578989 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-I-TREEDSFTEHERM 302 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~-~~pe~S~~~~e~~ 302 (430) |+..+++|||.|-+.. .| ..-+|+-+|... | .+-++-....|.| T Consensus 192 rvfei~~~FR~ee~~~---~r---h~~EFt~le~~~a~~~d~~d~~~l~E~~ 237 (422) T 1n9w_A 192 RVYEVAPVWRMEEHHT---SR---HLNEYLSLDVEMGFIADEEDLMRLEEAL 237 (422) T ss_dssp EEEEEEEC-------------------CCEEEEEEEESCSSHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCCC---CC---CCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 1025533212578876---45---6843677887652111398888889999 No 59 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=93.79 E-value=0.24 Score=29.18 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999 Q gi|254780680|r 29 YILSLDEKNRILIKKIEDIRARRNSNSAQI 58 (430) Q Consensus 29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeI 58 (430) +|..|.++.++++.++++++.+.+.+..++ T Consensus 39 eI~~Le~~l~el~~~l~ele~~Iq~Lq~ql 68 (409) T 1m1j_C 39 ELLEIEGLLQQATNSTGSIEYLIQHIKTIY 68 (409) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999 No 60 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=93.39 E-value=0.24 Score=29.19 Aligned_cols=28 Identities=14% Similarity=-0.039 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999 Q gi|254780680|r 30 ILSLDEKNRILIKKIEDIRARRNSNSAQ 57 (430) Q Consensus 30 il~Ld~~rr~l~~e~e~LraerN~lSKe 57 (430) +..+.+.+|+.+.++++++...|+.+++ T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (562) T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSED 114 (562) T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999889999999999 No 61 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Probab=92.29 E-value=0.7 Score=25.70 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=16.4 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHH Q ss_conf 9884478519999999998469895889 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSE 28 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id 28 (430) |++++.+.+..+.+.+.+..=..-+|+| T Consensus 1 M~~~~~~~~~i~~l~~~~~~l~~~ld~d 28 (365) T 1gqe_A 1 MFEINPVNNRIQDLTERSDVLRGYLDYD 28 (365) T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 9663899999999999999998767989 No 62 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Probab=91.45 E-value=0.48 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999886444666667788877443 Q gi|254780680|r 77 TSTLKEQLPILEKEEHEVCSSLKKLI 102 (430) Q Consensus 77 ~~~Lk~eik~le~~~~~le~el~~ll 102 (430) .+.+.+.+..+.+++..++.++..+. T Consensus 165 I~~LQ~~i~~l~~kIq~Leq~Isq~e 190 (461) T 3ghg_B 165 LRVLRSILENLRSKIQKLESDVSAQM 190 (461) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999998888 No 63 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=90.55 E-value=0.76 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254780680|r 34 DEKNRILIKKIEDIRARRNSN 54 (430) Q Consensus 34 d~~rr~l~~e~e~LraerN~l 54 (430) |+..|.+..++++|+.+.+++ T Consensus 56 ~~~~~~~~~~i~~l~~~~~~~ 76 (562) T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562) T ss_dssp HHHHHHHHHHHHHHHHHHTHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 886544889999999999999 No 64 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Probab=90.32 E-value=1.1 Score=24.32 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254780680|r 35 EKNRILIKKIEDIRARRNSNS 55 (430) Q Consensus 35 ~~rr~l~~e~e~LraerN~lS 55 (430) +..+++..++++|+.+.+.+. T Consensus 60 ~~~~~~~~~i~~l~~~l~~~q 80 (390) T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQ 80 (390) T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999 No 65 >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Probab=86.84 E-value=1.8 Score=22.71 Aligned_cols=190 Identities=15% Similarity=0.120 Sum_probs=96.0 Q ss_pred CCCCCCCCCCCCCCHHHH----CCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH Q ss_conf 565665666211220221----1731000112221675301056488999999999998622320320212356202788 Q gi|254780680|r 130 KKPSAIHLSREHFEIGEA----LGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA 205 (430) Q Consensus 130 ~~~~f~f~~k~H~elge~----l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~ 205 (430) .+|.+.+....-.||.|. +|.=.+.. .....+... -....-.+.+.+- +..+ ..||.|+.+..|+.++. T Consensus 350 ~vPs~R~DI~~~~DliEEIaRiyGydnI~~-~~p~~~~~~-~~~~~~~~~~~ir----~~L~-~~Gf~E~itysf~s~~~ 422 (589) T 3l4g_B 350 EIPPTRADIIHACDIVEDAAIAYGYNNIQM-TLPKTYTIA-NQFPLNKLTELLR----HDMA-AAGFTEALTFALCSQED 422 (589) T ss_dssp EECSSCTTCCSHHHHHHHHHHHHCGGGSCC-CCCCCCCCC-CCCHHHHHHHHHH----HHHH-HTTCEECCCCSEECHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCC-CCCHHHHHHHHHH----HHHH-HCCCCCEEEECCCCHHH T ss_conf 488755645875417888886700302666-677644556-5785799999999----9999-71212202002569899 Q ss_pred HHHHHHCHHHHHHHHHHH----HCCEECCCCCC-HH-HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 986551422476776431----00023134541-14-5445342059555042088532210788433554343212222 Q gi|254780680|r 206 MYGTGQIPKFADDMFCTT----DGRWLIPTSEV-SL-TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH 279 (430) Q Consensus 206 ~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv-pL-~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH 279 (430) +..-+..+...+....+. +++--.=|+=. +| .++-.+. . ...|++++.++++|.++.++. .|. . T Consensus 423 ~~~~~~~~~~~~~~v~l~NPis~e~s~lR~sLlp~LL~~~~~N~--~-~~~~~~lFEiG~Vf~~~~~~~----~~~---~ 492 (589) T 3l4g_B 423 IADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR--K-MPLPLKLFEISDIVIKDSNTD----VGA---K 492 (589) T ss_dssp HTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTT--T-SCSCEEEEEEEEEEEECTTST----TSE---E T ss_pred HHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH--C-CCCCEEEEEECCEECCCCCCC----CCC---C T ss_conf 98763556665642896087534444420257688999999731--6-799767997314472688643----453---0 Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCC Q ss_conf 1020021212786501457898999999999984106753037801178443402410110100483 Q gi|254780680|r 280 QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNL 346 (430) Q Consensus 280 QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~ 346 (430) |..++-. .++..+. -+..+-...+.+++.|+++.-. +-+.-..+..+...|.|||.. T Consensus 493 ~~~~l~~-~~~~~~~---~f~~~kg~~e~ll~~l~i~~~~------~~~~~~~~~~~~~~~hPgrsA 549 (589) T 3l4g_B 493 NYRHLCA-VYYNKNP---GFEIIHGLLDRIMQLLDVPPGE------DKGGYVIKASEGPAFFPGRCA 549 (589) T ss_dssp EEEEEEE-EEESSSC---CHHHHHHHHHHHHHHTTCCBST------TTTSEEEEECCCTTEEEEEEE T ss_pred CCCEEEE-EECCCCC---CHHHHHHHHHHHHHHCCCCCCC------CCCCEEEECCCCCCCCCCCEE T ss_conf 1147889-9708999---9999999999999872997445------666379964878876898769 No 66 >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.20A {Eubacterium eligens atcc 27750} Probab=86.69 E-value=1.8 Score=22.65 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999986449--98799999999999998864446666677888774 Q gi|254780680|r 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK 100 (430) Q Consensus 33 Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ 100 (430) +-++.-++..+.+.++++.....++...++.+- -....++++.+...+..++..++.++..++.++.+ T Consensus 66 iaDel~~~~~~~~~l~~~~~~~~~e~~~~k~el~~l~~e~e~l~e~le~l~~el~~L~~~l~~le~Ele~ 135 (138) T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999998887889999989999999999998999999999999999999999999999999999999977 No 67 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Probab=85.32 E-value=2.1 Score=22.18 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999986449--------------987999999999999988644466666778887 Q gi|254780680|r 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--------------NLSLVDALKNETSTLKEQLPILEKEEHEVCSSL 98 (430) Q Consensus 33 Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--------------~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el 98 (430) +..++..+..++-++..+.+.+-|.+..+++.+ +...+++-+.+.+.+..+++.++....++..++ T Consensus 15 l~~e~~ei~~kigei~~~i~elkKal~ELk~a~GkCPvCgreLtEeHk~~Li~~y~~el~~~~~el~el~~~~~el~~ei 94 (112) T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999987899999999999974787998899376898999999999999778999999998899999999 Q ss_pred HHH Q ss_conf 744 Q gi|254780680|r 99 KKL 101 (430) Q Consensus 99 ~~l 101 (430) ..+ T Consensus 95 ~ki 97 (112) T 1l8d_A 95 RRI 97 (112) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 68 >1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Probab=84.94 E-value=2.2 Score=22.06 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999864499879999999999999886444666667788877443 Q gi|254780680|r 28 EYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI 102 (430) Q Consensus 28 d~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll 102 (430) ..+..+.+..+..+.+++++..+.+++..++-.....- ...+..+..+...|..+|..+..++..++.++..+. T Consensus 86 ~~i~~l~~~lk~~~~~~~~~~~~~~~~~~eLe~~i~~L-k~~i~~~~~~i~~Lq~~ie~~~~~ik~Le~~i~~~~ 159 (491) T 1m1j_A 86 RVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL-KQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999-999999999999999999999999999999999999 No 69 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Probab=83.36 E-value=2.5 Score=21.59 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=56.2 Q ss_pred CCC-HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 988-4478519999999998469895889999999999999999999999999999999998644998799999999999 Q gi|254780680|r 1 MLD-IQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETST 79 (430) Q Consensus 1 MLD-ik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~ 79 (430) |+| ++-|.+..+.+.+.+..=++-.|.++..++-.+...+...++..+.-++.+ +++..+..-.++.+..++ T Consensus 1 M~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~-~dl~el~el~~D~e~~el------ 73 (354) T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVL-EDLEQAESLLDDPELKEM------ 73 (354) T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSTTCHHHHHH------ T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHH------ T ss_conf 9157999999999999986198322399999999999999999999999999999-989999988528110789------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 99886444666667788877443100225881122113555402420 Q gi|254780680|r 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIR 126 (430) Q Consensus 80 Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~ 126 (430) ..+++..+...+..+.+++...+ +| .|+.++.|.++. T Consensus 74 a~ee~~~l~~~l~~l~~ele~~l--L~--------~~~~D~~nailE 110 (354) T 3d5a_X 74 AKAEREALLARKEALEKELERHL--LP--------KDPMDERDAIVE 110 (354) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--ST--------TCCCCCCCEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CC--------CCCCCCCCCEEE T ss_conf 99999999877888999999971--77--------986555471799 No 70 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Probab=81.01 E-value=3 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998864446666 Q gi|254780680|r 70 VDALKNETSTLKEQLPILEKEE 91 (430) Q Consensus 70 ~~~Lk~e~~~Lk~eik~le~~~ 91 (430) .+++.+|..+|.++++.+++.+ T Consensus 404 ~~kl~~E~~~l~~~i~~l~~IL 425 (716) T 1zvu_A 404 EMKIRGEQSELEKERDQLQGIL 425 (716) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999997420 No 71 >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis} Probab=79.60 E-value=3.3 Score=20.67 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=77.7 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCC-EECCCCCCHHH-HHHHHHCCCHHHHCC Q ss_conf 999998622320320212356202788986551422476776431----000-23134541145-445342059555042 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGR-WLIPTSEVSLT-NLYSHEIIESKSLPL 252 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l-~Li~TaEvpL~-~~~~~~~l~~~~LPi 252 (430) .+..-+..+ ..||.|+.+-.++..+.....+..|. +....+. ++. +|=+|==.+|. ++-.+ +.....|+ T Consensus 10 ~~~ir~~L~-~~Gf~Ev~tys~~~~~~~~~~~~~~~--~~~v~l~NPls~d~~~lR~sLlpgLL~~~~~N--~~~~~~~~ 84 (213) T 3ica_A 10 QTVVSEQLV-GAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLSHN--LRRKHLSL 84 (213) T ss_dssp HHHHHHHHH-HTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHH--HTTTCSEE T ss_pred HHHHHHHHH-HCCCCEEEECCCCCHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--HHCCCCCE T ss_conf 999999999-78963001276789899987417875--67079528865668999887686499998766--65346663 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCCHH------HHHHHHHHHHHHHHHHHCCHHHHC Q ss_conf 088532210788433554343212222102002121278-65014------578989999999999841067530 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR-EEDSF------TEHERMLSCAEEILKRLDLHYRVV 320 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S~------~~~e~~~~~~~~i~~~L~lpyRvv 320 (430) ++..++++|+.+.+.. .|...+-...|-..+-....-. .+++| .-+-.+-...+.+++.||+..... T Consensus 85 ~lFEiG~vf~~~~~~~-~~~~~~~~~~e~~~l~~~~~G~~~~~~w~~~~~~~df~~~Kgive~ll~~lgi~~~~~ 158 (213) T 3ica_A 85 YLFEWGKCYRFHAAKR-TDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAY 158 (213) T ss_dssp EEEEEEEEEEEECCCC---CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGE T ss_pred EEEEEEEEECCCCCCC-CCCCCHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 5897411661477765-4321010020351899999888656665654330059999999999999829983213 No 72 >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Probab=74.55 E-value=4.5 Score=19.69 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.7 Q ss_pred CCCCHHHHCCCC Q ss_conf 588112211355 Q gi|254780680|r 108 VPLEEVPIGTSA 119 (430) Q Consensus 108 i~~~~VP~G~de 119 (430) .|...+|.+..| T Consensus 176 cp~~~t~l~~~e 187 (862) T 1gax_A 176 CPRCETTLSDLE 187 (862) T ss_dssp ETTTTEEECGGG T ss_pred ECCCCCHHHHHC T ss_conf 378775776403 No 73 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=70.98 E-value=4.8 Score=19.45 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=17.9 Q ss_pred CCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHH Q ss_conf 8332375310210076453268473389984--10104200432289999999988 Q gi|254780680|r 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILE 398 (430) Q Consensus 345 ~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailE 398 (430) +.|.|---..|+ .| -|.+|...+- ...-.-|+|- +.-.|-|+|. T Consensus 314 ~~rs~~IRtY~~-p~------~~V~DhR~~~~~~~~~~vldG~---ld~~i~a~~~ 359 (371) T 1zbt_A 314 GDRSERIRTYNF-PQ------NRVTDHRIGLTLQKLDSILSGK---LDEVIDALIL 359 (371) T ss_dssp SCTTSEEEEEET-TT------TEEEETTTTEEESCHHHHHTTC---CHHHHHHHHH T ss_pred CCCCCCCCCCCC-CC------CCHHHHCCCCEECCHHHHHCCC---HHHHHHHHHH T ss_conf 664357508107-97------7506632488636835761986---6999999999 No 74 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Probab=70.51 E-value=4.7 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=8.5 Q ss_pred HHCCCCCCCHHHH Q ss_conf 1002258811221 Q gi|254780680|r 103 SCIPNVPLEEVPI 115 (430) Q Consensus 103 l~IPNi~~~~VP~ 115 (430) -+||++.|---|. T Consensus 234 Raip~~~DGlKp~ 246 (692) T 2xcs_B 234 RALPDVRDGLKPV 246 (692) T ss_dssp TSSCBTTTCCCHH T ss_pred CCCCHHHCCCCHH T ss_conf 0475142176578 No 75 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Probab=69.27 E-value=5.5 Score=19.01 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98799999999999998864446666677888774 Q gi|254780680|r 66 NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK 100 (430) Q Consensus 66 ~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ 100 (430) +.++++.|+.++.+++++...+.++-+++..++.+ T Consensus 17 e~~DvEaLrlE~~eLkqK~e~L~eEN~eLK~kL~q 51 (53) T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 96009999999999999999999999999999870 No 76 >2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 2etn_A Probab=69.19 E-value=5.8 Score=18.85 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=44.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 999999999999999999999999998644998---79999999999999886444666667788877443100225881 Q gi|254780680|r 35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL---SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLE 111 (430) Q Consensus 35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~---~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~ 111 (430) +-+..|+.+++.|+.++-++.+.|+.+...|+. ++-+..+++-..+..+|..|+..+. ..- -+...+.+ T Consensus 10 ~g~~~L~~EL~~l~~~~~e~~~~i~~a~~~gDl~ENaeY~aAke~q~~~e~rI~~Le~~L~-------~A~-iie~~~~d 81 (156) T 2f23_A 10 AGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS-------RAV-ILEEGSGE 81 (156) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH-------HEE-ECCTTCSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC-CCCCCCCC T ss_conf 9999999999998877788999999999737864217699999999999999999999998-------613-05678765 Q ss_pred HHHHC Q ss_conf 12211 Q gi|254780680|r 112 EVPIG 116 (430) Q Consensus 112 ~VP~G 116 (430) -|-.| T Consensus 82 ~V~~G 86 (156) T 2f23_A 82 VIGLG 86 (156) T ss_dssp CCCTT T ss_pred EEEEC T ss_conf 89966 No 77 >2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens} Probab=67.24 E-value=6.4 Score=18.57 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=43.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999999998644---998799999999999998864446666677888774431002 Q gi|254780680|r 30 ILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAE---GNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIP 106 (430) Q Consensus 30 il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~---~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IP 106 (430) --+|-.+...++++++..+..|+-+.|..+..... |+. .++..+..++..+|..|+.++..++.-+.++--++| T Consensus 17 rkkL~~ki~~l~~ei~ke~~~ReGl~KM~~vY~~nP~~Gd~---~sve~qL~e~~~~id~L~~e~~K~q~~Laele~~~~ 93 (98) T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDP---ASLEPQIAETLSNIERLKLEVQKYEAWLAEAESRVL 93 (98) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCG---GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999999899999999999868777887---778999999999999999999999999999847355 No 78 >2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli} Probab=65.10 E-value=6.9 Score=18.28 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCH Q ss_conf 999999999999999-99999999999864499879999999999999886444666667788877443-1002258811 Q gi|254780680|r 35 EKNRILIKKIEDIRA-RRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI-SCIPNVPLEE 112 (430) Q Consensus 35 ~~rr~l~~e~e~Lra-erN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll-l~IPNi~~~~ 112 (430) +-+..|+.+++.|+. ++.++.++|+.+...|+-.+-. +-..-+++...++.....++..+...- ......+.+- T Consensus 9 ~g~~~L~~eL~~L~~~~r~~~~~~i~~A~~~gDl~ENa----ey~~ake~q~~~~~ri~~L~~~L~~a~ii~~~~~~~~~ 84 (158) T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENA----DYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGK 84 (158) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCSSSCSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99999999999998702288999999998669900066----67999999998999999999999863147875466664 Q ss_pred HHHCC Q ss_conf 22113 Q gi|254780680|r 113 VPIGT 117 (430) Q Consensus 113 VP~G~ 117 (430) |..|. T Consensus 85 v~~gs 89 (158) T 2p4v_A 85 VFFGA 89 (158) T ss_dssp CSSSC T ss_pred CCCCE T ss_conf 35865 No 79 >1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2 Probab=63.55 E-value=7.4 Score=18.08 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCC- Q ss_conf 999999999999999-99999999999864499879999999999999886444666667788877443-100225881- Q gi|254780680|r 35 EKNRILIKKIEDIRA-RRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI-SCIPNVPLE- 111 (430) Q Consensus 35 ~~rr~l~~e~e~Lra-erN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll-l~IPNi~~~- 111 (430) +-+..|+.+++.|+. ++-++++.|+.+...|+..+... -..-+++...++.....++..+...- ......+++ T Consensus 9 ~g~~~L~~EL~~L~~~~r~e~~~~i~~A~~~GDl~Enae----y~aAk~~~~~~e~ri~~l~~~l~~a~ivd~~~~~~~~ 84 (158) T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAE----YHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNG 84 (158) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHH----HHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGSCCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC T ss_conf 999999999999986301778988999886578222646----8999999999999999999764134997576689999 Q ss_pred HHHHC Q ss_conf 12211 Q gi|254780680|r 112 EVPIG 116 (430) Q Consensus 112 ~VP~G 116 (430) .|=.| T Consensus 85 ~V~~G 89 (158) T 1grj_A 85 RVIFG 89 (158) T ss_dssp BCCTT T ss_pred EEEEE T ss_conf 79951 No 80 >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Probab=63.13 E-value=7.5 Score=18.03 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=86.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHH---------HHCCHHHHHHHHHCHHH-----HHHHHHHHHCCEEC-CCCCCH Q ss_conf 8899999999999862232032021235---------62027889865514224-----76776431000231-345411 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAP---------LLVRDEAMYGTGQIPKF-----ADDMFCTTDGRWLI-PTSEVS 235 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P---------~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~Li-~TaEvp 235 (430) +..+-.-..+|+.. .||+++-.| -++...-=+-+=+.|.+ ..|.|.++++..|- -|+-+. T Consensus 50 l~~~~~~i~~~F~~-----~g~~~~~~~~f~~~d~~~~vet~~~NFD~L~~P~dHPaRd~~DTfyl~~~~lLRthts~~q 124 (415) T 3cmq_A 50 LWLIKERVKEHFYK-----QYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQ 124 (415) T ss_dssp HHHHHHHHHHHHHH-----HHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGH T ss_pred HHHHHHHHHHHHHH-----CCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHH T ss_conf 89999999999987-----3866357876212589997327414202227899987567434167689870468898889 Q ss_pred HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC----------------------- Q ss_conf 454453420595550420885322107884335543432122221020021212786----------------------- Q gi|254780680|r 236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE----------------------- 292 (430) Q Consensus 236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p----------------------- 292 (430) .-.+++ -+-.+...+.|||++.-.+ .. ...|+.+|.+.+... T Consensus 125 ~~~l~~--------~~~~~~~~G~vyR~d~iD~----~h---~~~FhQ~eg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (415) T 3cmq_A 125 WDLLHA--------GLDAFLVVGDVYRRDQIDS----QH---YPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSA 189 (415) T ss_dssp HHHHHT--------TCSEEEEEEEEECCCCCBT----TB---CSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCS T ss_pred HHHHHC--------CCCCEEEECCCCCCCCCCC----CC---CCEEEECCEEEECCCCHHHCCCCCCCCCCCCCCCCCCC T ss_conf 999854--------8993476477715798776----44---41123110466314000001234443222112333343 Q ss_pred --CC------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC Q ss_conf --50------1457898999999999984106753037801178443402410110100483323753102100764532 Q gi|254780680|r 293 --ED------SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM 364 (430) Q Consensus 293 --e~------S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl 364 (430) .+ -.-.+-.+....+.+++.|+.+--.+........+. .-...++++. .++|.||..|.-..--..+.+ T Consensus 190 h~~e~~~~e~~~~~~~dLKg~le~ll~~l~~~~~~~r~~~~~fPft-~Ps~e~~I~~--~~~wiei~g~G~vhP~Vl~~~ 266 (415) T 3cmq_A 190 HKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFT-HPSFEMEINF--HGEWLEVLGCGVMEQQLVNSA 266 (415) T ss_dssp SCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTE-EEEEEEEEEE--TTEEEEEEEEEEECHHHHHHT T ss_pred CCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCEEEEEEE--CCCCCEEEEEECCCHHHHHHC T ss_conf 2100012211121088899999999999679875799840789876-7632799998--885666878602579999865 Q ss_pred CC Q ss_conf 68 Q gi|254780680|r 365 NS 366 (430) Q Consensus 365 ~i 366 (430) ++ T Consensus 267 g~ 268 (415) T 3cmq_A 267 GA 268 (415) T ss_dssp TC T ss_pred CC T ss_conf 99 No 81 >2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Probab=61.86 E-value=3.8 Score=20.24 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC Q ss_conf 8999999999984106753037801178443402410110100483323753102100 Q gi|254780680|r 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 (430) Q Consensus 301 ~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D 358 (430) +.-..-..++..+|+|.|.|.- ... -.=.|||.|++++|.-+-.|.+.-| T Consensus 145 e~A~~f~~~~Ra~G~~aR~V~~------~~d--H~W~EVy~~~~~rWv~vDP~e~~id 194 (295) T 2f4m_A 145 EWANCFTLCCRALGFEARYVWD------YTD--HVWTEVYSPSQQRWLHCDACEDVCD 194 (295) T ss_dssp HHHHHHHHHHHHTTCCEEEEEE------TTT--EEEEEEEETTTTEEEEEETTTTEES T ss_pred HHHHHHHHHHHHCCCCEEEEEC------CCC--CEEEEEEECCCCCEEEECCCCCCCC T ss_conf 8999999999985996499942------765--4478998768795787768446368 No 82 >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, phosphoprotein, zinc, nucleus, cytoplasm, zinc-finger, coiled coil; 2.9A {Mus musculus} Probab=58.57 E-value=8.9 Score=17.48 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=35.1 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98469895889999999999999999999999999999999998644998799999999999998864446666677 Q gi|254780680|r 18 LKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEV 94 (430) Q Consensus 18 l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~l 94 (430) |..|+.......|-.|-.+...+..++..++...+.+...+..++.. .+.+..+..+...++.++..+......+ T Consensus 14 ~~~~~~~~a~~eie~L~~qL~~~e~~l~~~q~~~~~Le~~~~~l~~~--~eei~~Lq~ql~~l~~el~~~~~~~~~l 88 (110) T 2v4h_A 14 LVPRGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV--METVPVLKAQADIYKADFQAERHAREKL 88 (110) T ss_dssp CCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 68998417799999999999999999999999999999999999999--9899999999999999999999999999 No 83 >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Probab=57.84 E-value=9.1 Score=17.39 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999998644998799999999999998864446666677888774 Q gi|254780680|r 32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK 100 (430) Q Consensus 32 ~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ 100 (430) .+|.+...+..++..++.+.+.+..++..+. ..+..+..+...+..++..++..+..+..++.. T Consensus 15 ~ld~~i~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~e~~i~~~~~~i~~ 78 (256) T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKN-----KAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256) T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999-----999999999999999999999999999999988 No 84 >3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Probab=56.14 E-value=9.7 Score=17.20 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999864499879999999999999886444666667788877443100 Q gi|254780680|r 28 EYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCI 105 (430) Q Consensus 28 d~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~I 105 (430) +....|-...|.+..++..|..+.+.+-.+|..+.++|+...+..+..+...++..+..+..... .+..+.+.| T Consensus 14 e~~~~Lr~~~~~Ler~~~~le~~~~k~~~~iK~~~k~g~~~~a~~~ak~~~~~~k~~~~~~~~~~----~l~~~~~~i 87 (218) T 3frt_A 14 EWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA----HMNSVLMGM 87 (218) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH T ss_conf 99999999999999999999999999999999999827899999999999999999999999999----999999999 No 85 >3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Probab=54.56 E-value=10 Score=17.02 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998864446666677888774 Q gi|254780680|r 74 KNETSTLKEQLPILEKEEHEVCSSLKK 100 (430) Q Consensus 74 k~e~~~Lk~eik~le~~~~~le~el~~ 100 (430) ..+..++..+++.+++++..+...+.. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (497) T 3iox_A 79 QKDLADYPVKLKAYEDEQTSIKAALAE 105 (497) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999 No 86 >2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4} Probab=54.37 E-value=10 Score=17.00 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999 Q gi|254780680|r 29 YILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 (430) Q Consensus 29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~ 60 (430) .|-.|......+...++.+....+.+...+.. T Consensus 55 ~i~~L~~~~~~l~~~i~~l~~~i~~l~~~~~~ 86 (487) T 2bsg_A 55 NVEVLDKNIGILKTSLETANSDIKTIQGILDV 86 (487) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999887 No 87 >1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Probab=53.74 E-value=11 Score=16.93 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=61.3 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999846989588999999999999999999999999999999999864499879999999999999886444666 Q gi|254780680|r 11 PEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKE 90 (430) Q Consensus 11 ~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~ 90 (430) .+.....+.......+++.+..+-.+.+.+..+++..+...+.+......+...........+......|...-..+... T Consensus 16 l~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~l~~~ 95 (214) T 1s35_A 16 LSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRM 95 (214) T ss_dssp HHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999987088999999999999999999999999978489999999888874356530689999999999999999999 Q ss_pred HHHHHHHHHH Q ss_conf 6677888774 Q gi|254780680|r 91 EHEVCSSLKK 100 (430) Q Consensus 91 ~~~le~el~~ 100 (430) .......+.. T Consensus 96 ~~~~~~~l~~ 105 (214) T 1s35_A 96 WESRSHTLAQ 105 (214) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999888888 No 88 >2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Probab=52.19 E-value=11 Score=16.76 Aligned_cols=57 Identities=14% Similarity=0.336 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999998644998799999999999998864446666 Q gi|254780680|r 35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEE 91 (430) Q Consensus 35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~ 91 (430) ++|+.+..+++....+-+++=+++......-.......+..+++..+.++..++.++ T Consensus 45 eerk~~i~~ie~~leEA~ell~qMelE~r~~p~s~R~~~~~klr~Yk~dl~~lk~el 101 (102) T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 889999999998799999999999999882988889999999999999999998662 No 89 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Probab=51.95 E-value=0.89 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=22.5 Q ss_pred CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHH Q ss_conf 048332375310210076453268473389984--10104200432289999999988 Q gi|254780680|r 343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILE 398 (430) Q Consensus 343 ~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailE 398 (430) +...|++---..|+ - |. |.+|...+. ...-.-|+|- +.-.|-|.|+ T Consensus 303 ~~~~r~~~iRtY~f-p-~~-----rVtDhR~~~~~~~~~~vl~G~---ld~~i~a~l~ 350 (365) T 2ihr_1 303 RPIEWGSQIRSYVL-D-KN-----YVKDHRTGLMRHDPENVLDGD---LMDLIWAGLE 350 (365) T ss_dssp CCSCCCSCSEEEEG-G-GT-----EEEETTTCCEESCHHHHTTTC---CHHHHHHHHH T ss_pred CCCCCCCCCCCEEC-C-CC-----CCCCCCCCCEECCHHHHHCCC---CHHHHHHHHH T ss_conf 77776588115258-9-88-----342016498557868876887---0999999999 No 90 >1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1 Probab=51.75 E-value=4.8 Score=19.45 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=14.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCC Q ss_conf 865014578989999999999841067-5303780 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCT 324 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~s 324 (430) +|+-|.+.++++.+. ++.+|++= +++.++. T Consensus 120 ~p~~~~~~~~~~~~~----~~~~G~~~~~i~~~~q 150 (159) T 1ew3_A 120 EPDVSPEIKEEFVKI----VQKRGIVKENIIDLTK 150 (159) T ss_dssp SSSCCHHHHHHHHHH----HHHTTCCGGGEEEGGG T ss_pred CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCC T ss_conf 999899999999999----9985999899899998 No 91 >1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacterthermautotrophicus} SCOP: a.2.5.1 PDB: 1fxk_B Probab=51.38 E-value=11 Score=16.67 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=49.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999999999999999998644-----------------9987999999999999988644466 Q gi|254780680|r 27 SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAE-----------------GNLSLVDALKNETSTLKEQLPILEK 89 (430) Q Consensus 27 id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~-----------------~~~~~~~~Lk~e~~~Lk~eik~le~ 89 (430) +..+..+-.+...+..++..+.++.++...-+..+..- ...+....+......|...|+.+++ T Consensus 7 ~~~~q~lq~elq~l~~q~~~le~q~~E~~~vl~el~~l~~d~~vyk~VG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~k 86 (107) T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999998728862379998440451112999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 6667788877443100 Q gi|254780680|r 90 EEHEVCSSLKKLISCI 105 (430) Q Consensus 90 ~~~~le~el~~lll~I 105 (430) +...++.++..+--.| T Consensus 87 q~~~l~~~~~e~~~~l 102 (107) T 1fxk_A 87 QEERVMKKLQEMQVNI 102 (107) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 92 >3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} Probab=51.18 E-value=12 Score=16.64 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=41.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999999999999999999999986449--987999999999999988644466666778887744 Q gi|254780680|r 25 PQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL 101 (430) Q Consensus 25 ~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l 101 (430) +.-++-.++++-+.+...+...||.+....-.++..+.... +.+.+.++..++.+|+.++ .++..+...++.+. T Consensus 68 LT~EQq~~~~~I~~~~~~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL---~~~R~~~~~qm~k~ 143 (175) T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL---DEQRVKRDVAMAQA 143 (175) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999997179999999999999999999999---99999999999984 No 93 >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis} Probab=50.53 E-value=12 Score=16.57 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=74.2 Q ss_pred HHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCC-EECCCCCCHHHH-HHHHHCCCHHHH Q ss_conf 99999998622320320212356202788986551422476776431----000-231345411454-453420595550 Q gi|254780680|r 177 ALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGR-WLIPTSEVSLTN-LYSHEIIESKSL 250 (430) Q Consensus 177 ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l-~Li~TaEvpL~~-~~~~~~l~~~~L 250 (430) .|.+..-+..+ ..||+|+.+-.++.++....-+..| .++..++. +++ +|=+|-=.+|.. +-.+ +....- T Consensus 8 ~l~~~ir~~L~-~~Gf~Ev~tys~~s~~~~~~~~~~~--~~~~v~l~NPls~e~~~lR~sLlp~LL~~~~~N--~~~~~~ 82 (213) T 3ig2_A 8 KLQNLVAEQLV-GCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHN--ANRKNA 82 (213) T ss_dssp HHHHHHHHHHH-HTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------- T ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHCCCC--CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCC T ss_conf 99999999999-7897031146668989998742787--667189528875667888887798899999873--156767 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCCH------HHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 42088532210788433554343212222102002121278-6501------45789899999999998410675 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR-EEDS------FTEHERMLSCAEEILKRLDLHYR 318 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S------~~~~e~~~~~~~~i~~~L~lpyR 318 (430) ++++..++++|..+.+... ..+.+-..+|-..+-.+..-. ...+ ..-+-.+-...+.+++.||++.. T Consensus 83 ~~~lFEiG~vf~~~~~~~~-~~~~~~~~~e~~~L~~~~~G~~~~~~w~~~~~~~df~~lKg~le~ll~~lgi~~~ 156 (213) T 3ig2_A 83 DLKFFEFGNCYHFDAEKKN-PEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLH 156 (213) T ss_dssp CCEEEEEEEEEEECC-----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGG T ss_pred CEEEEEEEEEECCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH T ss_conf 6027987647736765566-4334566421068889987676655556653223099999999999998399823 No 94 >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Probab=50.53 E-value=12 Score=16.57 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=20.2 Q ss_pred CCCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHHHCC Q ss_conf 48332375310210076453268473389984--10104200432289999999988346 Q gi|254780680|r 344 QNLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILENYL 401 (430) Q Consensus 344 ~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailEn~q 401 (430) .+.|.|---.-|+ - |. |.+|...+. ...-.-|+|- +.-.|-|++..++ T Consensus 300 ~~~rse~IRtYn~-p-~~-----~V~DhR~~~~~~~~~~vl~G~---ld~~i~a~~~~~~ 349 (360) T 2b3t_B 300 SGDRSDRNRTYNF-P-QG-----RVTDHRINLTLYRLDEVMEGK---LDMLIEPIIQEHQ 349 (360) T ss_dssp ----CCEEEEEET-T-TT-----EEEEGGGTEEESCHHHHHHTC---THHHHHHHHHHHH T ss_pred CCCCCCCEEEEEC-C-CC-----CCHHHCCCCEECCHHHHHCCC---HHHHHHHHHHHHH T ss_conf 0123375274517-9-77-----644314588777835764987---2999999999999 No 95 >2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Probab=50.45 E-value=12 Score=16.57 Aligned_cols=76 Identities=14% Similarity=0.270 Sum_probs=51.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 89999999999999999999999999999999998644998799999999999998864446666677888774431002 Q gi|254780680|r 27 SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIP 106 (430) Q Consensus 27 id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IP 106 (430) -+....|....+.+..++..|..+...+-.++..+.++|+...+-.+..+.+.++..+..+..... .+..++..|= T Consensus 13 ~e~~~~L~~~~~~L~r~~~~Le~~~~~~~~~~k~~~k~g~~~~A~~~lk~~~~~~k~~~~~~~~~~----~le~~~~~ie 88 (179) T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA----HMNSVLMGMK 88 (179) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH T ss_conf 999999999999999999999999999999999999827599999999999999999999999999----9999999999 No 96 >1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Probab=49.06 E-value=12 Score=16.42 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=34.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999986449987999999999999988644466666778 Q gi|254780680|r 35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVC 95 (430) Q Consensus 35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le 95 (430) ++++.+..+++.-..+-+.+=.++......-.......+..+++..+.++..+..+++.+. T Consensus 34 eerk~~i~~ie~~ldEA~ell~QMelE~r~~p~s~R~~~~~klR~Yk~dL~~lk~e~k~a~ 94 (102) T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7799999999985899999999999998839877799999999999999999999999867 No 97 >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Probab=48.70 E-value=13 Score=16.38 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=12.1 Q ss_pred CCEEHHHHHCCHHHHHHHHH Q ss_conf 20212356202788986551 Q gi|254780680|r 192 YTEVSAPLLVRDEAMYGTGQ 211 (430) Q Consensus 192 y~~v~~P~lv~~~~~~gtG~ 211 (430) |.|+.|-.|||...-.|||+ T Consensus 179 y~piiP~vLvNGs~GIgtG~ 198 (514) T 2inr_A 179 LPSRFPNLLVNGSTGISAGY 198 (514) T ss_dssp CCCSSCHHHHHCEECC--CC T ss_pred CCCCCCHHHHCCCCCCEEEE T ss_conf 25767389873677622320 No 98 >2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A Probab=47.86 E-value=5 Score=19.31 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=8.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 65014578989999999999841067 Q gi|254780680|r 292 EEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 292 pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) |+-+.+..+++. .+.+.+|++- T Consensus 143 ~~~~~~~~~~f~----~~~~~~Gi~~ 164 (181) T 2a2u_A 143 KDLSSDIKEKFA----KLCEAHGITR 164 (181) T ss_dssp SSCCHHHHHHHH----HHHHTTTCCG T ss_pred CCCCHHHHHHHH----HHHHHCCCCH T ss_conf 999999999999----9999859898 No 99 >3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} PDB: 3kfg_A 3kfh_A 3kfi_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A 1df3_A 1jv4_A ... Probab=45.65 E-value=9 Score=17.43 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=17.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHHC Q ss_conf 8650145789899999999998410675-303780117 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGDL 327 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgdl 327 (430) +|+-+.+.++++ .++++.+|++-. ++.++..|. T Consensus 123 ~~~~~~~~~~~f----~~~~~~~G~~~~~i~~~~~~d~ 156 (162) T 3kff_A 123 KADLNSDIKEKF----VKLCEEHGIIKENIIDLTKTNR 156 (162) T ss_dssp SSCCCHHHHHHH----HHHHHHTTCCGGGEEEGGGSCC T ss_pred CCCCCHHHHHHH----HHHHHHCCCCHHHEEECCCCCC T ss_conf 999999999999----9999985989899799999873 No 100 >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Probab=44.61 E-value=14 Score=15.94 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.7 Q ss_pred CCEEHHHHHCCHHHHHHHHH Q ss_conf 20212356202788986551 Q gi|254780680|r 192 YTEVSAPLLVRDEAMYGTGQ 211 (430) Q Consensus 192 y~~v~~P~lv~~~~~~gtG~ 211 (430) |.|+.|-.|||...-.|||+ T Consensus 136 y~piiP~vLvNG~~GIgtG~ 155 (470) T 3ilw_A 136 LPSRFPNLLANGSGGIAVGM 155 (470) T ss_dssp CCCSSCHHHHHCEECSSTTC T ss_pred CCCCCCHHHHCCCCCEEEEE T ss_conf 16436299863777525300 No 101 >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus} Probab=44.31 E-value=14 Score=15.91 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=12.7 Q ss_pred CCEEECCHHHHHHHHHHHHHHHH Q ss_conf 53010564889999999999986 Q gi|254780680|r 163 RFSVLTGHLAHLERALGQFMIDL 185 (430) Q Consensus 163 rF~~Lkg~~A~Le~ALi~y~ld~ 185 (430) ||=.+... -+|+-.|||+-.. T Consensus 440 GFE~~~~n--sfeQlciNy~nEk 460 (1080) T 2dfs_A 440 GFETFEIN--SFEQFCINYANEK 460 (1080) T ss_dssp CCCCCSSB--CHHHHHHHHHHHH T ss_pred CCCCCCCC--CHHHHHHHHHHHH T ss_conf 88775646--6899998888999 No 102 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=44.13 E-value=15 Score=15.89 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=14.5 Q ss_pred CCEEHHHHHCCHHHHHHHHH Q ss_conf 20212356202788986551 Q gi|254780680|r 192 YTEVSAPLLVRDEAMYGTGQ 211 (430) Q Consensus 192 y~~v~~P~lv~~~~~~gtG~ 211 (430) |.|+.|-.|||...-.|||+ T Consensus 425 y~piIPmvLVNG~~GIgtG~ 444 (767) T 2xkj_E 425 LPARVPNILLNGTTGIAVGM 444 (767) T ss_dssp CCCSSCHHHHHCEEEEETTE T ss_pred CCCCCHHHHHCCCCCEEHHH T ss_conf 26535399864786410244 No 103 >2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A Probab=43.51 E-value=10 Score=16.95 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=10.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 8650145789899999999998410675 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYR 318 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR 318 (430) +|+-+.+.++++... .+.+||+-. T Consensus 132 ~~~~~~e~~e~f~~~----~~~~Gi~~e 155 (166) T 2ra6_A 132 TPNLSNEIKKRFEED----FMNRGFRRE 155 (166) T ss_dssp SSCCCHHHHHHHHHH----HHTTTCCGG T ss_pred CCCCCHHHHHHHHHH----HHHCCCCHH T ss_conf 999999999999999----998499989 No 104 >1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* 2ffd_B* 1rf1_B* ... Probab=43.23 E-value=5.3 Score=19.14 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999998864446666677888774431002258 Q gi|254780680|r 73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP 109 (430) Q Consensus 73 Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~ 109 (430) +...+..+..+|+.++.......+.+.......+++| T Consensus 35 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 71 (328) T 1fzc_B 35 LRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIP 71 (328) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999999999888878988752423333457 No 105 >3isr_A Transglutaminase-like enzymes, putative cysteine protease; PSI, MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii atcc 33406} Probab=41.23 E-value=15 Score=15.87 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC Q ss_conf 98999999999984106753037801178443402410110100483323753102100 Q gi|254780680|r 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 (430) Q Consensus 300 e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D 358 (430) +.+-.....++..+|||.|+|.--....+..++ --=.|||+|+ .|.-+=-.-||.+ T Consensus 182 ~d~A~l~~al~R~~GIPaR~vsG~~~~~~~~~~-HAW~ev~~~g--gW~~~DpT~~~~~ 237 (293) T 3isr_A 182 RDFAHLGIALCRALSIPARYFTGYAFKLNPPDF-HACFEAYIGG--NWIIFDATRLVPL 237 (293) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCE-EEEEEEEETT--EEEEECTTCCSCG T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-EEEEEEEECC--CEEEECCCCCCCC T ss_conf 889999999999769986999766747999874-3899999899--7999879999988 No 106 >1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1 Probab=40.85 E-value=16 Score=15.54 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999986 Q gi|254780680|r 43 KIEDIRARRNSNSAQIGQAI 62 (430) Q Consensus 43 e~e~LraerN~lSKeIg~~k 62 (430) +++.|+++...+.+.|..+. T Consensus 2 Eie~L~~~~~~Le~~l~~~e 21 (84) T 1gk4_A 2 EVDALKGTNESLERQMREME 21 (84) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 58789979999999999999 No 107 >1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Probab=40.43 E-value=9.5 Score=17.28 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCHHHHCC--CCCHHCCC Q ss_conf 999999998410675303--78011784 Q gi|254780680|r 304 SCAEEILKRLDLHYRVVS--LCTGDLGF 329 (430) Q Consensus 304 ~~~~~i~~~L~lpyRvv~--~~sgdlg~ 329 (430) .....++..||||.|+|- -+|+|... T Consensus 277 gV~~TVlRcLGIP~RvVTNf~SAHDt~~ 304 (695) T 1g0d_A 277 AVACTVLRCLGIPTRPITNFASAHDVDG 304 (695) T ss_dssp HHHHHHHHHHTCCEEEEEEEEETTTTTT T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCC T ss_conf 7788899863887156414343246888 No 108 >1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Probab=40.32 E-value=9.7 Score=17.20 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=14.6 Q ss_pred HHHHHHHHHHCCHHHHCCC--CCHHCCC Q ss_conf 9999999984106753037--8011784 Q gi|254780680|r 304 SCAEEILKRLDLHYRVVSL--CTGDLGF 329 (430) Q Consensus 304 ~~~~~i~~~L~lpyRvv~~--~sgdlg~ 329 (430) .....++..||||.|+|-- +|+|... T Consensus 319 gV~~TvlRcLGIP~R~VTNf~SAHDtd~ 346 (731) T 1ex0_A 319 GVFNTFLRCLGIPARIVTNYFSAHDNDA 346 (731) T ss_dssp HHHHHHHHHHTCCEEEEEEEEECCSCTT T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCCC T ss_conf 7777766226886401335564455888 No 109 >2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y* Probab=40.16 E-value=17 Score=15.46 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=3.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 988644466666 Q gi|254780680|r 81 KEQLPILEKEEH 92 (430) Q Consensus 81 k~eik~le~~~~ 92 (430) +.++..+..++. T Consensus 355 ~~e~e~~~~~l~ 366 (551) T 2b5u_A 355 KSELDAANKTLA 366 (551) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 110 >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=40.07 E-value=17 Score=15.45 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999986449-9879999999999999886444666 Q gi|254780680|r 42 KKIEDIRARRNSNSAQIGQAIAEG-NLSLVDALKNETSTLKEQLPILEKE 90 (430) Q Consensus 42 ~e~e~LraerN~lSKeIg~~k~~~-~~~~~~~Lk~e~~~Lk~eik~le~~ 90 (430) .+++.|+.+.++-...|..+|..+ +.++++.-.++.-.||.+++.++.+ T Consensus 13 ~~~~~L~~~I~~QGd~VR~LK~~kA~k~~i~~aV~~LL~LK~~~k~~tg~ 62 (79) T 2djv_A 13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGK 62 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999989999998724899899999999999999999997498 No 111 >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Probab=39.78 E-value=17 Score=15.42 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254780680|r 33 LDEKNRILIKKIEDIRARRNSNSA 56 (430) Q Consensus 33 Ld~~rr~l~~e~e~LraerN~lSK 56 (430) ++.+...++.++..-+..+..+++ T Consensus 24 ~e~e~~~l~~~L~~e~~~r~~aE~ 47 (97) T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEE 47 (97) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999999999999999999 No 112 >1x3z_A Peptide:N-glycanase; protein-protein-inhibitor complex, hydrolase; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Probab=38.84 E-value=17 Score=15.40 Aligned_cols=50 Identities=20% Similarity=0.093 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC Q ss_conf 8999999999984106753037801178443402410110100483323753102100 Q gi|254780680|r 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 (430) Q Consensus 301 ~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D 358 (430) |.-....-++..||++.|.|.- ..--.=+|||.+++++|.-|-.|-+.-| T Consensus 186 E~an~f~~~lRa~G~~aR~V~~--------~~dhvW~EVy~~~~kRWI~VDP~e~~id 235 (335) T 1x3z_A 186 EWCNLFTLILKSFGLDVRYVWN--------REDHVWCEYFSNFLNRWVHVDSCEQSFD 235 (335) T ss_dssp HHHHHHHHHHHTTTCCEEEEEE--------TTTEEEEEEEETTTTEEEEEETTTTEES T ss_pred HHHHHHHHHHHHCCCCEEEEEE--------CCCCEEEEEEECCCCCEEEECCCCCCCC T ss_conf 8999999999974885699973--------8983799985066581677878778438 No 113 >3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris} Probab=38.06 E-value=7.3 Score=18.14 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=19.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHHC Q ss_conf 8650145789899999999998410675-303780117 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGDL 327 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgdl 327 (430) +|+-+.+.++++... ++.+||+-. ++.++..|- T Consensus 123 ~p~l~~e~~~~f~~~----~~~~Gi~~e~i~~~~q~d~ 156 (170) T 3l4r_A 123 DLSRQQDFLPAFESV----CEDIGLHKDQIVVLSDDDR 156 (170) T ss_dssp CGGGTTTTHHHHHHH----HHHTTCCGGGEEECCTTTC T ss_pred CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCCCCC T ss_conf 888999999999999----9985989899799999880 No 114 >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Probab=36.71 E-value=19 Score=15.09 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=16.8 Q ss_pred EEEECCCHHHHHH--HHHHHHHHCCCCCCCEECCCCCC Q ss_conf 0420043228999--99999883468998386582223 Q gi|254780680|r 379 THTLNGSGVAVGR--CLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 379 ~htlNgt~~A~~R--~l~ailEn~q~~dg~i~iP~~L~ 414 (430) .|.|-|. +...| +|.||+-----=-..+.+|..|| T Consensus 488 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (526) T 3iyk_A 488 MHILRGP-IHFQRRAILGALKFGCKVLGDRLDVPLFLR 524 (526) T ss_pred HHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHC T ss_conf 9997385-456899999999844425436443427533 No 115 >1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Probab=36.68 E-value=8.9 Score=17.49 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=13.6 Q ss_pred HHHHHHHHHHCCHHHHCC--CCCHHCCC Q ss_conf 999999998410675303--78011784 Q gi|254780680|r 304 SCAEEILKRLDLHYRVVS--LCTGDLGF 329 (430) Q Consensus 304 ~~~~~i~~~L~lpyRvv~--~~sgdlg~ 329 (430) .....++..||||.|+|- -+|+|... T Consensus 277 gv~~TvlR~LGIP~R~VTnf~SAHDtd~ 304 (692) T 1vjj_A 277 GTLNTALRSLGIPSRVITNFNSAHDTDR 304 (692) T ss_dssp HHHHHHHHHHTCCEEEEEEEEEEECSSS T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCC T ss_conf 7788888744786267525567345888 No 116 >2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens} Probab=36.61 E-value=11 Score=16.92 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=17.5 Q ss_pred EECC-CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCC Q ss_conf 2127-865014578989999999999841067-5303780 Q gi|254780680|r 287 VSIT-REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCT 324 (430) Q Consensus 287 ~~~~-~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~s 324 (430) +.++ +|+-|.+..+++.. +.+.|||+= +++.++. T Consensus 121 ~llsR~~~~~~~~~~~~~~----~~~~~Gl~~~~i~~~~~ 156 (161) T 2xst_A 121 QLYSRTQDVSPQALKSFQD----FYPTLGLPKDMMVMLPQ 156 (161) T ss_dssp EEEESSSSCCHHHHHHHHH----HGGGGTCCGGGEEECCC T ss_pred EEEECCCCCCHHHHHHHHH----HHHHCCCCHHHEEECCC T ss_conf 9997689999999999999----99984999899799998 No 117 >2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Probab=34.42 E-value=19 Score=15.01 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=8.0 Q ss_pred HCCCCCC-HHHHHH Q ss_conf 4698958-899999 Q gi|254780680|r 20 KRHLEPQ-SEYILS 32 (430) Q Consensus 20 ~R~~~~~-id~il~ 32 (430) .||++.+ ||.++. T Consensus 17 ~rGY~~~EVd~FLd 30 (57) T 2wuj_A 17 FRGYDEDEVNEFLA 30 (57) T ss_dssp TTEEEHHHHHHHHH T ss_pred CCCCCHHHHHHHHH T ss_conf 79989999999999 No 118 >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Probab=34.26 E-value=9.5 Score=17.26 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=33.0 Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCEECC-------CCCCCCCCCEE Q ss_conf 4200432289999999988346899838658-------22231018801 Q gi|254780680|r 380 HTLNGSGVAVGRCLIAILENYLNADGSVTIP-------TVLRPYMNNLA 421 (430) Q Consensus 380 htlNgt~~A~~R~l~ailEn~q~~dg~i~iP-------~~L~pym~g~~ 421 (430) --+|-+..|..++|.||.++.....+...|| ..|+.++||-. T Consensus 271 ~~in~sL~~L~~vi~aL~~~~~~~~~~~~IPyR~SkLT~lL~~~L~G~s 319 (354) T 3gbj_A 271 SNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354) T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 0102169999999999975541347998668846889998787549987 No 119 >2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A Probab=34.26 E-value=15 Score=15.85 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCC Q ss_conf 99999999999886444666667788877443100----2258 Q gi|254780680|r 71 DALKNETSTLKEQLPILEKEEHEVCSSLKKLISCI----PNVP 109 (430) Q Consensus 71 ~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~I----PNi~ 109 (430) ++|+..+-..+.+++..++..+++|+-++.+|+++ |+|+ T Consensus 49 eELi~l~lk~~~~l~~k~~~irELEDYID~LLvRVME~tP~IL 91 (107) T 2gzd_C 49 EEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSIL 91 (107) T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHCGGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 9999999999999998888999999999999999998581776 No 120 >1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Probab=32.65 E-value=9.1 Score=17.39 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=9.1 Q ss_pred HCCCCCEEECCHHHHH Q ss_conf 2167530105648899 Q gi|254780680|r 159 LSGARFSVLTGHLAHL 174 (430) Q Consensus 159 vsGsrF~~Lkg~~A~L 174 (430) |+|..=|++.++-+.+ T Consensus 246 i~~~~KYv~l~asS~~ 261 (591) T 1a31_A 246 IQGSIKYIMLNPSSRI 261 (591) T ss_dssp TTCCEEEECBCTTSHH T ss_pred CCCCEEEEEECCCCCC T ss_conf 6896579996754410 No 121 >1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Probab=32.40 E-value=22 Score=14.61 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999999999886444666667788877443100225881122113555402420001565665666 Q gi|254780680|r 72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLS 138 (430) Q Consensus 72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~ 138 (430) ++..-++.+..+...-......+.++.-+..|..+.+|+|| .+||+-|+.+-.+|-+ T Consensus 153 EI~~A~~~~~~~~~~~~~~~~~I~~~~i~~~L~~~~~pdpD----------LlIRTsGe~RLSnFLl 209 (249) T 1f75_A 153 EIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPE----------LLIRTSGEERLSNFLI 209 (249) T ss_dssp HHHHHHHHHHHHHHTTSSCGGGCSHHHHGGGSTTTTSCCCS----------EEEECTTCCBCCSCST T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC----------EEEECCCCCCCCCCHH T ss_conf 99999999999875056650022799999856899989988----------7886388630022145 No 122 >2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Probab=31.50 E-value=22 Score=14.50 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999986449-----------------98799999999999998864446666 Q gi|254780680|r 29 YILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG-----------------NLSLVDALKNETSTLKEQLPILEKEE 91 (430) Q Consensus 29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~-----------------~~~~~~~Lk~e~~~Lk~eik~le~~~ 91 (430) .+..+-.+...+...+..+..+.++...-+..+..-. ..+....+......|...++.+++.+ T Consensus 14 ~~q~lq~elq~l~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vlv~~~~~e~~~~L~~~~e~l~~~i~~l~~q~ 93 (117) T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQE 93 (117) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999871786237999943445303299999999999999999999999999 Q ss_pred HHHHHHHHHHH Q ss_conf 67788877443 Q gi|254780680|r 92 HEVCSSLKKLI 102 (430) Q Consensus 92 ~~le~el~~ll 102 (430) ..++.++..+- T Consensus 94 ~~l~~~l~~~~ 104 (117) T 2zqm_A 94 KKLNEKLKELT 104 (117) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 123 >2zpn_A Autophagy-related protein 8; ubiquitin fold, autophagy, cytoplasmic vesicle, lipoprotein, membrane, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 2kq7_A 2kwc_A Probab=30.03 E-value=11 Score=16.85 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=27.8 Q ss_pred CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 02100764532684733899841010420043228999999998834689983 Q gi|254780680|r 354 STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGS 406 (430) Q Consensus 354 Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~ 406 (430) +.+....-+|+++ + .. +.=|+. +|++.+.+..+|..|-|.|+.+||= T Consensus 61 ~qf~~viRkrl~l---~-~~-~alFlf-vn~~l~~~s~~~~~lY~~~KdeDGF 107 (119) T 2zpn_A 61 GQFVYVIRKRIML---P-PE-KAIFIF-VNDTLPPTAALMSAIYQEHKDKDGF 107 (119) T ss_dssp HHHHHHHHHHTTC---C-TT-SCCEEE-BTTBCCCTTCBHHHHHHHHCCTTSC T ss_pred HHHHHHHHHHCCC---C-CC-CEEEEE-ECCCCCCCHHHHHHHHHHHCCCCCE T ss_conf 8889997865056---9-78-559999-8982478104799999980788887 No 124 >2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A Probab=29.81 E-value=24 Score=14.31 Aligned_cols=63 Identities=6% Similarity=0.165 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999986449987999999999999988644466666778887744 Q gi|254780680|r 34 DEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL 101 (430) Q Consensus 34 d~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l 101 (430) ..+...+..++..+......+.++...+. ...+.+....+.+..+++.++.....++..+..+ T Consensus 33 e~~~~eleeel~~~~~~lk~Le~~~~~~~-----~~~~~~~~~~~~l~~kl~eae~k~~~aE~~v~~L 95 (107) T 2wps_A 33 DQNTADITTNTNSINQNTTDIATNTTNIN-----NLSDSITTLMKQIEDKIEEILSKIYHIENEIARI 95 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99899999999988999999998899999-----9999999999999999999999999999999999 No 125 >2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A* Probab=28.83 E-value=25 Score=14.19 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=22.6 Q ss_pred CCCHHH-HHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH Q ss_conf 310001-122216753010564889999999999986223203202123562 Q gi|254780680|r 150 LMDFDR-ATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200 (430) Q Consensus 150 liDfe~-a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~l 200 (430) .-||-+ +.+..||| ..||.|.-||..- +...++ ==.-++||.+ T Consensus 149 ~~~f~k~a~~~~GsR-----D~~AQlF~ALLRs-LG~~aR--LV~SLQpl~f 192 (533) T 2qsf_A 149 RSDFLRAVSKGHGDP-----DISVQGFVAMLRA-CNVNAR--LIMSCQPPDF 192 (533) T ss_dssp HHHHHHHHHHTEECH-----HHHHHHHHHHHHH-TTCCEE--EEEEECCCCT T ss_pred HHHHHHHHHHCCCCH-----HHHHHHHHHHHHH-CCCCCE--EEEECCCCCC T ss_conf 899999998604886-----7899999999986-487640--7986478888 No 126 >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Probab=28.68 E-value=25 Score=14.17 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=40.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999864499879999999999999886444666667788877 Q gi|254780680|r 30 ILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLK 99 (430) Q Consensus 30 il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~ 99 (430) |...-+..--++-++++|+.+.+.++.++..+.. ..+.|..+-..|+.+-..-.+.++.+-.+++ T Consensus 15 IqqAvdTI~LLQMEieELKEkn~~L~qe~~~~~~-----~~e~L~~eN~qLk~E~~~WqeRlr~LLGKmd 79 (81) T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH-----QREELERENNHLKEQQNGWQERLQALLGRME 79 (81) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999999999875778899998886-----5899999999989999999999999871030 No 127 >1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A* Probab=28.43 E-value=14 Score=16.07 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=16.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCC Q ss_conf 865014578989999999999841067530378 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYRVVSLC 323 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~ 323 (430) +|+-+.+.++++ .++.+.+|++-+.+-.. T Consensus 120 ~~~~~~~~~~~f----~~~~~~~G~~~~~i~~~ 148 (164) T 1epa_A 120 SLDDNGEALYNF----RKITSDHGFSETDLYIL 148 (164) T ss_dssp CSSCCHHHHHHH----HHHHHHTTCCGGGEEEC T ss_pred CCCCCHHHHHHH----HHHHHHCCCCHHHEEEC T ss_conf 899999999999----99999849898998998 No 128 >2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A* Probab=27.34 E-value=26 Score=14.01 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998644998799999999999998864 Q gi|254780680|r 45 EDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLP 85 (430) Q Consensus 45 e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik 85 (430) ..++.+.+.+..+|..+...|+.+...++..+...++.+++ T Consensus 101 ~~l~~~i~~l~~~i~ea~~~gD~~~~~~l~~ei~~L~k~L~ 141 (143) T 2r6a_C 101 RPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKMLS 141 (143) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999888899999999999999999751 No 129 >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Probab=26.85 E-value=27 Score=13.95 Aligned_cols=176 Identities=11% Similarity=0.074 Sum_probs=82.5 Q ss_pred CCCCCCCCCCCCCCHHHHC----CCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH Q ss_conf 5656656662112202211----731000112221675301056488999999999998622320320212356202788 Q gi|254780680|r 130 KKPSAIHLSREHFEIGEAL----GLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA 205 (430) Q Consensus 130 ~~~~f~f~~k~H~elge~l----~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~ 205 (430) .+|.+.+....-.||.|.. |.=.+....-...+--.--..+--.+ .+..-+. +...||.|+.+-.++.++. T Consensus 450 ~vP~~R~DI~~e~DliEEIaRiyGydnip~~~p~~~~~~~~~~~~~~~~----~~~lr~~-L~~~Gf~Ev~tysf~s~~~ 524 (795) T 2rhq_B 450 NVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHK----TRTLKET-LEGAGLNQAITYSLVSKDH 524 (795) T ss_dssp EEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHH----HHHHHHH-HHHTTCEECCCCSEECTTT T ss_pred ECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH----HHHHHHH-HHHCCCCCCCCCCCCCCHH T ss_conf 8998545347665377767744373007676862000245678878988----9999999-9864986434522433002 Q ss_pred HHHHHHCHHHHHHHHHHH----HCCEECCCCCC-HHH-HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCC----CCE Q ss_conf 986551422476776431----00023134541-145-44534205955504208853221078843355434----321 Q gi|254780680|r 206 MYGTGQIPKFADDMFCTT----DGRWLIPTSEV-SLT-NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDT----RGM 275 (430) Q Consensus 206 ~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv-pL~-~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~Gkdt----rGl 275 (430) +...+..+ .....+. .++-..=|+=. +|. ++-.+.- ....+++++.++++|.........+. .|+ T Consensus 525 ~~~~~~~~---~~~v~l~NPls~e~s~lR~SLlp~LL~~~~~N~~--r~~~~~~lFEiG~vf~~~~~~~~~~~~~~l~~~ 599 (795) T 2rhq_B 525 AKDFALQE---RPTISLLMPMSEAHATLRQSLLPHLIEATAYNVA--RKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGI 599 (795) T ss_dssp TTTTCSSC---CCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHH--TTCCCEEEEEEEEEEECCCTTSCCEEEEEEEEE T ss_pred HHHHCCCC---CCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCCHHCCCEEEECCCCCCCCCCHHCEEEE T ss_conf 11102346---5433215721342556506532667888887774--589875510064289647764453101204677 Q ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHC Q ss_conf 222210200212127865014578989999999999841067530 Q gi|254780680|r 276 LRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVV 320 (430) Q Consensus 276 ~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv 320 (430) ..-+.+ .-.+..... ..-+..+....+.+++.|++.+... T Consensus 600 ~~g~~~----~~~~~~~~~-~~df~~~Kg~ve~ll~~l~~~~~~~ 639 (795) T 2rhq_B 600 LTGEYV----VNAWQGKKE-EIDFFIAKGVVDRVAEKLNLEFSYK 639 (795) T ss_dssp EESEEE----EEGGGTEEE-ECCHHHHHHHHHHHHHHHTCCCEEE T ss_pred EECCCC----CHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHCEEC T ss_conf 715634----012126765-6788999889999999843312221 No 130 >3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A Probab=25.44 E-value=24 Score=14.22 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=24.0 Q ss_pred ECC-CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCC-CCHHCCCHH Q ss_conf 127-8650145789899999999998410675-3037-801178443 Q gi|254780680|r 288 SIT-REEDSFTEHERMLSCAEEILKRLDLHYR-VVSL-CTGDLGFSA 331 (430) Q Consensus 288 ~~~-~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~-~sgdlg~~a 331 (430) .++ +|+-+.+.+++... +.+.+|+|-- +|.+ .+.|.=.++ T Consensus 126 L~sRtp~l~~e~le~F~~----~~~~~G~~~~~Iv~~~~~~d~C~~~ 168 (192) T 3bx6_A 126 VYADKPETTKEQLGEFYE----ALDCLRIPKSDVVYTDWKKDKCEPL 168 (192) T ss_dssp EEESSSCCCTTTTHHHHH----HHHHHTCCGGGCEECCGGGCCCHHH T ss_pred EEECCCCCCHHHHHHHHH----HHHHCCCCHHHEEECCCCCCCCCCC T ss_conf 997899999999999999----9988699989989816888978741 No 131 >1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 1qg5_A 1bsy_A 1bso_A 2akq_A 2blg_A 2q2m_A 2q2p_A 2q39_A 3blg_A ... Probab=25.13 E-value=26 Score=14.06 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=10.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 865014578989999999999841067 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) +|+-+.+..+++... ++.|||+= T Consensus 125 ~p~l~~e~~e~f~~~----~~~~g~~~ 147 (162) T 1beb_A 125 TPEVDDEALEKFDKA----LKALPMHI 147 (162) T ss_dssp SSSCCHHHHHHHHHH----HTTSCCCE T ss_pred CCCCCHHHHHHHHHH----HHHCCCCH T ss_conf 999999999999999----99859999 No 132 >3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium} Probab=25.05 E-value=23 Score=14.44 Aligned_cols=25 Identities=24% Similarity=0.054 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCC Q ss_conf 9899999999998410675303780 Q gi|254780680|r 300 ERMLSCAEEILKRLDLHYRVVSLCT 324 (430) Q Consensus 300 e~~~~~~~~i~~~L~lpyRvv~~~s 324 (430) +++++.|+.-+..+++|||.+.-.. T Consensus 132 ~~l~~~Ae~GL~~~ni~yr~i~~~~ 156 (227) T 3gr1_A 132 VTAAGQAEAGLKQQALPYSRRNHKG 156 (227) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETT T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 9999999965875288549995699 No 133 >1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Probab=24.97 E-value=29 Score=13.71 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999986449987999999999999988644466666778887 Q gi|254780680|r 32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSL 98 (430) Q Consensus 32 ~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el 98 (430) ...+...++...+..++...+.+.+........+......++..++..+..++..+-..++..-..+ T Consensus 6 ~F~~~v~eI~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 72 (196) T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSA 72 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999865899867889999999999999999999999999986 No 134 >3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A Probab=24.35 E-value=29 Score=13.63 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=10.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 650145789899999999998410675 Q gi|254780680|r 292 EEDSFTEHERMLSCAEEILKRLDLHYR 318 (430) Q Consensus 292 pe~S~~~~e~~~~~~~~i~~~L~lpyR 318 (430) |+-|.+.++++... .+.+|++=. T Consensus 125 ~~~~~~~~~~~~~~----~~~~G~~~~ 147 (162) T 3o22_A 125 QTPRAELKEKFTAF----CKAQGFTED 147 (162) T ss_dssp SSCCHHHHHHHHHH----HHHTTCCGG T ss_pred CCCCHHHHHHHHHH----HHHCCCCHH T ss_conf 99999999999999----998598989 No 135 >2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Probab=24.20 E-value=30 Score=13.61 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=8.5 Q ss_pred EEEEEECCCCCCCCCC Q ss_conf 2420001565665666 Q gi|254780680|r 123 ILIRSVGKKPSAIHLS 138 (430) Q Consensus 123 v~i~~~G~~~~f~f~~ 138 (430) .+||+-|+++-.+|-+ T Consensus 229 LlIRTsGe~RLSnFLl 244 (284) T 2vg3_A 229 LFLRTSGEQRSSNFML 244 (284) T ss_dssp EEEECTTCCCCTTTTT T ss_pred EEEECCCCCCCCCCCH T ss_conf 5886478620245210 No 136 >1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Probab=24.17 E-value=30 Score=13.60 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=53.2 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999846989588999999999999999999999999999999999864499879999999999999886444666 Q gi|254780680|r 11 PEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKE 90 (430) Q Consensus 11 ~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~ 90 (430) .+.....+.......+++.+..+-.+.+.+..+++..+...+.+......+.... ..+...+......|...-..+... T Consensus 19 l~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~i~~~~~~v~~l~~~~~~l~~~~-~~~~~~i~~~~~~l~~~w~~l~~~ 97 (216) T 1u5p_A 19 LSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSS-AFDTSQVKDKRETINGRFQRIKSM 97 (216) T ss_dssp HHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SSCTHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998638888999999999999999999999997899999999999986059-754799999999999999999999 Q ss_pred HHHHHHHHHH Q ss_conf 6677888774 Q gi|254780680|r 91 EHEVCSSLKK 100 (430) Q Consensus 91 ~~~le~el~~ 100 (430) ...-...+.. T Consensus 98 ~~~r~~~L~~ 107 (216) T 1u5p_A 98 AAARRAKLNE 107 (216) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 137 >1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B* Probab=23.90 E-value=24 Score=14.33 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC Q ss_conf 6444666667788877443100225881122113 Q gi|254780680|r 84 LPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117 (430) Q Consensus 84 ik~le~~~~~le~el~~lll~IPNi~~~~VP~G~ 117 (430) ++..++++...++ ..+..-.+-|++|-.||.|. T Consensus 104 Lk~F~~K~tayq~-~~q~Q~~~s~l~~ga~~~~~ 136 (149) T 1f32_A 104 VQTFREKIAAFEE-QQENQPPSSGMPHGAVPAGG 136 (149) T ss_dssp HHHHHHHHHHHHH-CCCCCCCG------------ T ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCC T ss_conf 9999999999999-98746311478787546776 No 138 >3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.30A {Salmonella typhimurium} Probab=23.23 E-value=24 Score=14.25 Aligned_cols=25 Identities=24% Similarity=0.054 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCC Q ss_conf 9899999999998410675303780 Q gi|254780680|r 300 ERMLSCAEEILKRLDLHYRVVSLCT 324 (430) Q Consensus 300 e~~~~~~~~i~~~L~lpyRvv~~~s 324 (430) +.++..|+.-+..+++|||.+.-.. T Consensus 132 ~~l~~~Ae~GL~~~nv~yr~i~~~~ 156 (197) T 3gr0_A 132 VTAAGQAEAGLKQQALPYSRRNHKG 156 (197) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETT T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 9999999975775398559984699 No 139 >1ul7_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1 Probab=22.99 E-value=31 Score=13.45 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=35.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHCC-----CCCHHCCCHHHEEEEEEEE-CCCCCCE Q ss_conf 0145789899999999998410675303-----7801178443402410110-1004833 Q gi|254780680|r 294 DSFTEHERMLSCAEEILKRLDLHYRVVS-----LCTGDLGFSACKTYDLEVW-LAGQNLY 347 (430) Q Consensus 294 ~S~~~~e~~~~~~~~i~~~L~lpyRvv~-----~~sgdlg~~a~~~~DiE~w-~P~~~~y 347 (430) .|..--++++...+..++.+++.|+... +-.++-+....-+++||+. +|...-| T Consensus 16 TS~~~P~eIm~eI~kaL~~~gi~~k~~g~y~~~c~~~~~~~~~~v~feieV~kv~~~~l~ 75 (102) T 1ul7_A 16 TSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLN 75 (102) T ss_dssp CBCSCHHHHHHHHHHHHHHTTCEEEECSTTCEEEEECSSCGGGCEEEEEEEEECSSSSSE T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEEECCCCCEE T ss_conf 757999999999999999859779985999999985589988537999999992788478 No 140 >3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A Probab=22.99 E-value=31 Score=13.44 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=10.8 Q ss_pred CCCEEECCHHHHHHHHHHHH Q ss_conf 75301056488999999999 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQF 181 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y 181 (430) ...-.+...+..|...|... T Consensus 205 ~~~~~~~~el~~l~~~l~~~ 224 (242) T 3c9i_A 205 VSDTYTQSEIQAIANALITE 224 (242) T ss_dssp CCSSCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 141 >2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protein secretion, microbial pathogenesi; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4 Probab=22.77 E-value=31 Score=13.41 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCHHH Q ss_conf 799999999999998864446666677888774---43100225881122 Q gi|254780680|r 68 SLVDALKNETSTLKEQLPILEKEEHEVCSSLKK---LISCIPNVPLEEVP 114 (430) Q Consensus 68 ~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~---lll~IPNi~~~~VP 114 (430) ..+..+...+..++..|..++.+++.++.+++. ....+-|||.++-| T Consensus 25 ~~l~a~~~~v~~~~~~i~~l~~~I~~~~k~~~~GiA~A~Ama~LP~~~~~ 74 (129) T 2gr7_A 25 SQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMP 74 (129) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCST T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 89999999988789999999999999999999999999999769976689 No 142 >1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A Probab=22.57 E-value=28 Score=13.78 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=19.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCCHHC Q ss_conf 865014578989999999999841067-5303780117 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCTGDL 327 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~sgdl 327 (430) +|+-+.+.++++.. +.+.+||+- .++.+...|. T Consensus 121 ~~~~~~e~~~~f~~----~~~~~G~~~~~I~~~~~~d~ 154 (157) T 1dzk_A 121 GTDIEDQDLEKFKE----VTRENGIPEENIVNIIERDD 154 (157) T ss_dssp SSCCCHHHHHHHHH----HHHHTTCCGGGEEESGGGCC T ss_pred CCCCCHHHHHHHHH----HHHHCCCCHHHEEECCCCCC T ss_conf 99999999999999----99984999899699887898 No 143 >1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} SCOP: c.101.1.1 PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1x09_A* 1x08_A* Probab=22.38 E-value=32 Score=13.36 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999999999886444666667788877443100225881122113555402420001565665666 Q gi|254780680|r 72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLS 138 (430) Q Consensus 72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~ 138 (430) ++..-++.+-++++.-.-....+.+++-..-+..+++|+|| .+||+-|+.+-.+|-+ T Consensus 150 EIv~A~k~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~pdpD----------LlIRTsGe~RLSnFLl 206 (253) T 1ueh_A 150 DIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVD----------LVIRTGGEHRISNFLL 206 (253) T ss_dssp HHHHHHHHHHHHHHTTSCCGGGCCHHHHHTTSTTTTSCCCC----------EEEECSSCCSCTTSSC T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC----------EEEECCCCEECCCCCC T ss_conf 99999999999998189997887788888764438999964----------5862699601346642 No 144 >2wew_A Apolipoprotein M; lipid transport, ligand-binding specificity, glycoprotein, myristic acid, HDL, lipocalin, transport, lipoproteins; HET: MYR; 1.95A {Homo sapiens} PDB: 2wex_A* Probab=21.98 E-value=32 Score=13.31 Aligned_cols=19 Identities=11% Similarity=-0.130 Sum_probs=12.7 Q ss_pred CCCCCHHHHHHHHHHHHHH Q ss_conf 7865014578989999999 Q gi|254780680|r 290 TREEDSFTEHERMLSCAEE 308 (430) Q Consensus 290 ~~pe~S~~~~e~~~~~~~~ 308 (430) -+|+-|.+.+|++...++. T Consensus 133 Rtp~vs~e~le~F~~~a~~ 151 (172) T 2wew_A 133 RSPHPPEKCVEEFKSLTSC 151 (172) T ss_dssp SSSSCCHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 6999999999999999998 No 145 >1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Probab=21.37 E-value=19 Score=15.10 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=13.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 1042004322899999999883468998 Q gi|254780680|r 378 FTHTLNGSGVAVGRCLIAILENYLNADG 405 (430) Q Consensus 378 ~~htlNgt~~A~~R~l~ailEn~q~~dg 405 (430) |+.. |++.+.+.-+|..|-+.|.++|| T Consensus 77 flfv-n~~l~~~s~~~~~lY~~~kdeDG 103 (117) T 1eo6_A 77 FLFV-DKTVPQSSLTMGQLYEKEKDEDG 103 (117) T ss_dssp EEEB-TTBCCCTTSBHHHHHHHHCCTTS T ss_pred EEEE-CCCCCCCHHHHHHHHHHHCCCCC T ss_conf 9999-88647722049999998178886 No 146 >2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A* Probab=21.13 E-value=34 Score=13.19 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=15.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCC Q ss_conf 8650145789899999999998410675-30378 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLC 323 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~ 323 (430) +|+-|.+.++++.. +.+.+||+-. ++.++ T Consensus 122 ~~~~~~e~~~~f~~----~~~~~G~~~e~i~~~~ 151 (160) T 2hlv_A 122 GLNVEDEDLEKFWK----LTEDKGIDKKNVVNFL 151 (160) T ss_dssp SSSCCHHHHHHHHH----HHHHTTCCGGGEEETT T ss_pred CCCCCHHHHHHHHH----HHHHCCCCHHHEEECC T ss_conf 99999999999999----9998599989979888 No 147 >1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1 Probab=20.70 E-value=29 Score=13.67 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=17.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHH Q ss_conf 8650145789899999999998410675-30378011 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGD 326 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgd 326 (430) +|+-|.+.++++... .+.+||+-. ++.++..| T Consensus 120 ~~~~~~~~~~~f~~~----~~~~Gi~~~~ii~~~~~d 152 (156) T 1bj7_A 120 GTSFTPEELEKYQQL----NSERGVPNENIENLIKTD 152 (156) T ss_dssp SSCCCHHHHHHHHHH----HHHHTCCGGGEEECGGGC T ss_pred CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCCCC T ss_conf 999999999999999----998499989979988789 No 148 >1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1 Probab=20.68 E-value=34 Score=13.12 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998864446666677888774 Q gi|254780680|r 74 KNETSTLKEQLPILEKEEHEVCSSLKK 100 (430) Q Consensus 74 k~e~~~Lk~eik~le~~~~~le~el~~ 100 (430) ++++..||++|++|+++...++.+=.- T Consensus 14 REEVevLke~I~eL~~~~~~Le~EN~~ 40 (78) T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTL 40 (78) T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999 No 149 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Probab=20.43 E-value=35 Score=13.08 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=4.7 Q ss_pred HHEEEEEEEECC Q ss_conf 340241011010 Q gi|254780680|r 331 ACKTYDLEVWLA 342 (430) Q Consensus 331 a~~~~DiE~w~P 342 (430) +||.---|+|.= T Consensus 219 ~SRnst~EmY~v 230 (305) T 2p41_A 219 LSRNSTHEMYWV 230 (305) T ss_dssp TSCTTCCCEEEE T ss_pred CCCCCCCEEEEE T ss_conf 887775227887 No 150 >2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein- protein complex, metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1 Probab=20.07 E-value=35 Score=13.03 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999986449987999999999999988644466666778887744 Q gi|254780680|r 37 NRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL 101 (430) Q Consensus 37 rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l 101 (430) ...++.+++.++.+...+...+..+.. ....+..+...++.++...+.++...+.++... T Consensus 63 l~e~~~~l~~l~~~~~~l~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~el~~~~~eL~~~ 122 (125) T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEE-----NNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998899999999999999999999-----999999999999999999999999999999975 Done!