Query         gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 430
No_of_seqs    246 out of 2490
Neff          6.6 
Searched_HMMs 23785
Date          Tue May 31 17:56:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780680.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2dq0_A Seryl-tRNA synthetase;  100.0       0       0 1246.0  31.8  424    1-427     1-448 (455)
  2 1wle_A Seryl-tRNA synthetase;  100.0       0       0 1207.0  32.5  425    1-429    40-480 (501)
  3 3lss_A Seryl-tRNA synthetase;  100.0       0       0 1198.4  31.2  425    1-429     7-473 (484)
  4 2dq3_A Seryl-tRNA synthetase;  100.0       0       0 1175.3  28.7  422    1-426     1-425 (425)
  5 1ses_A Seryl-tRNA synthetase;  100.0       0       0 1124.7  30.4  418    1-427     1-421 (421)
  6 3err_A Fusion protein of micro 100.0       0       0 1012.1  30.8  419    1-427     1-530 (536)
  7 2cja_A Seryl-tRNA synthetase;  100.0       0       0  433.1  12.2  300  103-422   166-517 (522)
  8 3mf2_A BLL0957 protein; aminoa 100.0       0       0  406.5   7.5  285  105-424    15-337 (346)
  9 1nj1_A Proline-tRNA synthetase 100.0 3.1E-35 1.3E-39  281.0  15.0  293  103-417    13-316 (501)
 10 3ial_A Prolyl-tRNA synthetase;  99.9 2.4E-25   1E-29  207.4  13.9  264  140-417    25-301 (518)
 11 1hc7_A Prolyl-tRNA synthetase;  99.9 8.8E-25 3.7E-29  203.3  12.9  267  131-417     9-289 (477)
 12 1nj8_A Proline-tRNA synthetase  99.9 4.6E-24 1.9E-28  198.0  14.0  264  140-417     8-284 (459)
 13 1nyr_A Threonyl-tRNA synthetas  99.9 9.9E-25 4.2E-29  202.9   9.3  264  138-416   240-546 (645)
 14 1qf6_A THRRS, threonyl-tRNA sy  99.9 1.5E-23 6.4E-28  194.1  12.9  264  138-416   241-540 (642)
 15 1evl_A Threonyl-tRNA synthetas  99.8   2E-20 8.4E-25  170.9  13.2  263  139-417     1-300 (401)
 16 2i4l_A Proline-tRNA ligase; al  99.8   4E-19 1.7E-23  161.2  13.4  256  159-424    54-372 (458)
 17 3a32_A Probable threonyl-tRNA   99.8 7.1E-19   3E-23  159.4  10.4  269  138-416     6-339 (471)
 18 2j3l_A Prolyl-tRNA synthetase;  99.7 3.5E-17 1.5E-21  146.8  13.5  182  139-332    21-207 (572)
 19 3dsq_A Pyrrolysyl-tRNA synthet  99.6 3.2E-15 1.4E-19  132.2   9.9  207  178-422    76-285 (288)
 20 2zt5_A Glycyl-tRNA synthetase;  99.2 3.1E-10 1.3E-14   95.2  11.4  265  143-417    72-561 (693)
 21 3ikl_A DNA polymerase subunit   99.1 8.2E-10 3.4E-14   92.1  10.4  256  141-417    69-350 (459)
 22 2zin_A Pyrrolysyl-tRNA synthet  99.1 3.2E-09 1.3E-13   87.7  12.2  208  170-421    79-288 (291)
 23 1qe0_A Histidyl-tRNA synthetas  99.1 3.6E-10 1.5E-14   94.7   7.3  146  162-317     6-158 (420)
 24 3net_A Histidyl-tRNA synthetas  98.9 4.6E-09 1.9E-13   86.5   8.5  153  162-323    16-185 (465)
 25 1ati_A Glycyl-tRNA synthetase;  98.8   4E-09 1.7E-13   86.9   5.8  269  144-424    11-405 (505)
 26 1h4v_B Histidyl-tRNA synthetas  98.8   1E-08 4.4E-13   83.9   6.9  145  162-316     7-157 (421)
 27 1htt_A Histidyl-tRNA synthetas  98.7 1.3E-07 5.6E-12   75.6   9.9  149  162-321     8-162 (423)
 28 1g5h_A Mitochondrial DNA polym  98.7 1.1E-07 4.5E-12   76.3   9.3  187  224-416   135-339 (454)
 29 3lc0_A Histidyl-tRNA synthetas  98.2 3.4E-06 1.4E-10   65.1   6.9  142  161-316    32-179 (456)
 30 1wu7_A Histidyl-tRNA synthetas  98.1 1.4E-05 6.1E-10   60.5   9.0  140  163-315    11-154 (434)
 31 3od1_A ATP phosphoribosyltrans  98.0 3.3E-05 1.4E-09   57.9   8.6  140  163-316    15-159 (400)
 32 1z7m_A ATP phosphoribosyltrans  97.7 0.00021 8.8E-09   51.9   8.4  141  166-321    30-178 (344)
 33 2rhq_A Phenylalanyl-tRNA synth  97.6 0.00041 1.7E-08   49.7   9.3  192  179-395    59-265 (294)
 34 2odr_A Phosphoseryl-tRNA synth  97.6 0.00023 9.9E-09   51.5   7.5  181  175-368   148-332 (665)
 35 2du7_A O-phosphoseryl-tRNA syn  97.5 0.00048   2E-08   49.2   8.3  114  243-368   209-325 (549)
 36 2odr_C Phosphoseryl-tRNA synth  97.4 0.00045 1.9E-08   49.4   7.0  178  174-367   147-331 (701)
 37 2odr_B Phosphoseryl-tRNA synth  97.3 0.00072   3E-08   47.9   7.3  182  174-368   147-332 (648)
 38 2odr_D Phosphoseryl-tRNA synth  97.2 0.00083 3.5E-08   47.4   6.6  169  187-368   160-332 (685)
 39 3l4g_A Phenylalanyl-tRNA synth  97.1  0.0035 1.5E-07   42.8   8.7  171  179-366   231-448 (508)
 40 3bju_A Lysyl-tRNA synthetase;   97.1 0.00071   3E-08   47.9   5.1  117  171-311   175-291 (521)
 41 3a5y_A GENX, putative lysyl-tR  97.0 0.00074 3.1E-08   47.8   4.9  138  153-313    15-158 (345)
 42 1b7y_A Phers, protein (phenyla  96.9  0.0039 1.7E-07   42.4   8.1  195  179-394   107-324 (350)
 43 2du3_A O-phosphoseryl-tRNA syn  96.8  0.0028 1.2E-07   43.5   6.4  114  241-368   195-321 (534)
 44 1e1o_A Lysyl-tRNA synthetase;   96.8  0.0012 4.9E-08   46.3   4.5  118  171-313   182-300 (504)
 45 3i7f_A Aspartyl-tRNA synthetas  96.7  0.0064 2.7E-07   40.8   7.9  115  171-304   243-359 (548)
 46 3a74_A Lysyl-tRNA synthetase;   96.7  0.0013 5.3E-08   46.1   4.2  115  173-305   175-290 (493)
 47 1usy_A ATP phosphoribosyltrans  96.5  0.0014 5.7E-08   45.8   2.9  115  178-316     9-123 (275)
 48 1x54_A Asparaginyl-tRNA synthe  96.5  0.0015 6.3E-08   45.5   3.2  115  171-305   134-249 (434)
 49 1wyd_A Hypothetical aspartyl-t  96.4  0.0037 1.6E-07   42.6   4.7  112  172-303   134-246 (429)
 50 1eov_A ASPRS, aspartyl-tRNA sy  96.3  0.0038 1.6E-07   42.5   4.6  206  170-416   176-385 (487)
 51 3m4p_A Ehasnrs, asparaginyl-tR  96.2  0.0039 1.6E-07   42.4   4.2  114  171-304   155-269 (456)
 52 1nnh_A Asparaginyl-tRNA synthe  95.8  0.0094   4E-07   39.6   4.4  118  171-303    14-137 (294)
 53 1m1j_B Fibrinogen beta chain;   95.8   0.054 2.3E-06   34.0   8.2   36   73-108   166-201 (464)
 54 3nem_A Aspartyl-tRNA synthetas  95.7   0.018 7.5E-07   37.5   5.6   98  170-287   135-233 (438)
 55 1m1j_B Fibrinogen beta chain;   95.6   0.048   2E-06   34.3   7.4   42   68-109   168-209 (464)
 56 1c0a_A Aspartyl tRNA synthetas  95.5  0.0095   4E-07   39.6   3.6  120  170-313   136-255 (585)
 57 1l0w_A Aspartyl-tRNA synthetas  95.4   0.019 7.9E-07   37.4   4.9  116  169-303   141-258 (580)
 58 1n9w_A Aspartyl-tRNA synthetas  95.0    0.09 3.8E-06   32.3   7.3  110  173-302   126-237 (422)
 59 1m1j_C Fibrinogen gamma chain;  93.8    0.24   1E-05   29.2   7.3   30   29-58     39-68  (409)
 60 3ghg_A Fibrinogen alpha chain;  93.4    0.24 9.9E-06   29.2   6.7   28   30-57     87-114 (562)
 61 1gqe_A Release factor 2, RF2;   92.3     0.7 2.9E-05   25.7   8.1   28    1-28      1-28  (365)
 62 3ghg_B Fibrinogen beta chain;   91.4    0.48   2E-05   26.9   6.3   26   77-102   165-190 (461)
 63 3ghg_A Fibrinogen alpha chain;  90.5    0.76 3.2E-05   25.4   6.6   21   34-54     56-76  (562)
 64 1deq_A Fibrinogen (alpha chain  90.3     1.1 4.5E-05   24.3   9.2   21   35-55     60-80  (390)
 65 3l4g_B Phenylalanyl-tRNA synth  86.8     1.8 7.4E-05   22.7   8.1  190  130-346   350-549 (589)
 66 3hnw_A Uncharacterized protein  86.7     1.8 7.5E-05   22.7  10.7   68   33-100    66-135 (138)
 67 1l8d_A DNA double-strand break  85.3     2.1 8.7E-05   22.2   9.8   69   33-101    15-97  (112)
 68 1m1j_A Fibrinogen alpha subuni  84.9     2.2 9.1E-05   22.1  10.4   74   28-102    86-159 (491)
 69 3d5a_X RF1, peptide chain rele  83.4     2.5  0.0001   21.6  11.9  109    1-126     1-110 (354)
 70 1zvu_A Topoisomerase IV subuni  81.0       3 0.00013   21.0   5.6   22   70-91    404-425 (716)
 71 3ica_A Phenylalanyl-tRNA synth  79.6     3.3 0.00014   20.7   6.9  136  179-320    10-158 (213)
 72 1gax_A Valrs, valyl-tRNA synth  74.6     4.5 0.00019   19.7   5.1   12  108-119   176-187 (862)
 73 1zbt_A RF-1, peptide chain rel  71.0     4.8  0.0002   19.5   4.3   44  345-398   314-359 (371)
 74 2xcs_B DNA gyrase subunit B, D  70.5     4.7  0.0002   19.5   4.2   13  103-115   234-246 (692)
 75 2yy0_A C-MYC-binding protein;   69.3     5.5 0.00023   19.0   4.3   35   66-100    17-51  (53)
 76 2f23_A Anti-cleavage anti-GREA  69.2     5.8 0.00025   18.8   8.3   74   35-116    10-86  (156)
 77 2ke4_A CDC42-interacting prote  67.2     6.4 0.00027   18.6   6.3   74   30-106    17-93  (98)
 78 2p4v_A Transcription elongatio  65.1     6.9 0.00029   18.3   8.7   79   35-117     9-89  (158)
 79 1grj_A GREA protein; transcrip  63.5     7.4 0.00031   18.1   8.7   78   35-116     9-89  (158)
 80 3cmq_A Phenylalanyl-tRNA synth  63.1     7.5 0.00032   18.0   9.7  173  171-366    50-268 (415)
 81 2f4m_A Peptide N-glycanase; gl  61.9     3.8 0.00016   20.2   2.3   50  301-358   145-194 (295)
 82 2v4h_A NF-kappa-B essential mo  58.6     8.9 0.00037   17.5  10.0   75   18-94     14-88  (110)
 83 3na7_A HP0958; flagellar bioge  57.8     9.1 0.00038   17.4  10.4   64   32-100    15-78  (256)
 84 3frt_A Charged multivesicular   56.1     9.7 0.00041   17.2  11.5   74   28-105    14-87  (218)
 85 3iox_A AGI/II, PA; alpha helix  54.6      10 0.00043   17.0  10.4   27   74-100    79-105 (497)
 86 2bsg_A Fibritin; viral protein  54.4      10 0.00043   17.0   9.9   32   29-60     55-86  (487)
 87 1s35_A Beta-I spectrin, spectr  53.7      11 0.00044   16.9  12.8   90   11-100    16-105 (214)
 88 2qyw_A Vesicle transport throu  52.2      11 0.00047   16.8   8.7   57   35-91     45-101 (102)
 89 2ihr_1 Peptide chain release f  51.9    0.89 3.8E-05   24.9  -2.3   46  343-398   303-350 (365)
 90 1ew3_A Allergen EQU C 1; lipoc  51.8     4.8  0.0002   19.4   1.5   30  291-324   120-150 (159)
 91 1fxk_A Prefoldin; archaeal pro  51.4      11 0.00048   16.7  11.4   79   27-105     7-102 (107)
 92 3lay_A Zinc resistance-associa  51.2      12 0.00048   16.6  10.3   74   25-101    68-143 (175)
 93 3ig2_A Phenylalanyl-tRNA synth  50.5      12  0.0005   16.6   7.3  136  177-318     8-156 (213)
 94 2b3t_B RF-1, peptide chain rel  50.5      12  0.0005   16.6   4.1   48  344-401   300-349 (360)
 95 2gd5_A Charged multivesicular   50.4      12  0.0005   16.6  11.5   76   27-106    13-88  (179)
 96 1vcs_A Vesicle transport throu  49.1      12 0.00052   16.4   7.1   61   35-95     34-94  (102)
 97 2inr_A DNA topoisomerase 4 sub  48.7      13 0.00053   16.4   5.2   20  192-211   179-198 (514)
 98 2a2u_A Protein (alpha-2U-globu  47.9       5 0.00021   19.3   1.1   22  292-317   143-164 (181)
 99 3kff_A MUP 4, major urinary pr  45.6       9 0.00038   17.4   2.1   33  291-327   123-156 (162)
100 3ilw_A DNA gyrase subunit A; D  44.6      14  0.0006   15.9   5.2   20  192-211   136-155 (470)
101 2dfs_A Myosin-5A; myosin-V, in  44.3      14 0.00061   15.9  10.4   21  163-185   440-460 (1080)
102 2xkj_E Topoisomerase IV; type   44.1      15 0.00061   15.9   5.5   20  192-211   425-444 (767)
103 2ra6_A Trichosurin; lipocalin,  43.5      10 0.00044   16.9   2.1   24  291-318   132-155 (166)
104 1fzc_B Fibrin; blood coagulati  43.2     5.3 0.00022   19.1   0.6   37   73-109    35-71  (328)
105 3isr_A Transglutaminase-like e  41.2      15 0.00062   15.9   2.6   56  300-358   182-237 (293)
106 1gk4_A Vimentin; intermediate   40.9      16 0.00068   15.5   7.1   20   43-62      2-21  (84)
107 1g0d_A Protein-glutamine gamma  40.4     9.5  0.0004   17.3   1.5   26  304-329   277-304 (695)
108 1ex0_A Coagulation factor XIII  40.3     9.7 0.00041   17.2   1.6   26  304-329   319-346 (731)
109 2b5u_A Colicin E3; high resolu  40.2      17  0.0007   15.5  10.1   12   81-92    355-366 (551)
110 2djv_A Methionyl-tRNA syntheta  40.1      17  0.0007   15.5   7.1   49   42-90     13-62  (79)
111 2eqb_B RAB guanine nucleotide   39.8      17 0.00071   15.4   7.0   24   33-56     24-47  (97)
112 1x3z_A Peptide:N-glycanase; pr  38.8      17 0.00071   15.4   2.6   50  301-358   186-235 (335)
113 3l4r_A Allergen DOG 2, minor a  38.1     7.3  0.0003   18.1   0.6   33  291-327   123-156 (170)
114 3iyk_A VP5; icosahedral virus;  36.7      19 0.00078   15.1   9.8   35  379-414   488-524 (526)
115 1vjj_A Protein-glutamine gluta  36.7     8.9 0.00037   17.5   0.9   26  304-329   277-304 (692)
116 2xst_A Lipocalin 15; transport  36.6      11 0.00045   16.9   1.3   34  287-324   121-156 (161)
117 2wuj_A Septum site-determining  34.4      19  0.0008   15.0   2.3   13   20-32     17-30  (57)
118 3gbj_A KIF13B protein; kinesin  34.3     9.5  0.0004   17.3   0.7   42  380-421   271-319 (354)
119 2gzd_C RAB11 family-interactin  34.3      15 0.00062   15.8   1.7   39   71-109    49-91  (107)
120 1a31_A Protein (topoisomerase   32.6     9.1 0.00038   17.4   0.4   16  159-174   246-261 (591)
121 1f75_A Undecaprenyl pyrophosph  32.4      22 0.00091   14.6   4.6   57   72-138   153-209 (249)
122 2zqm_A Prefoldin beta subunit   31.5      22 0.00094   14.5  11.3   74   29-102    14-104 (117)
123 2zpn_A Autophagy-related prote  30.0      11 0.00046   16.8   0.4   47  354-406    61-107 (119)
124 2wps_A Trimeric autotransporte  29.8      24   0.001   14.3  10.4   63   34-101    33-95  (107)
125 2qsf_A RAD4, DNA repair protei  28.8      25   0.001   14.2   3.0   43  150-200   149-192 (533)
126 2jee_A YIIU; FTSZ, septum, coi  28.7      25   0.001   14.2  10.2   65   30-99     15-79  (81)
127 1epa_A Epididymal retinoic aci  28.4      14 0.00058   16.1   0.7   29  291-323   120-148 (164)
128 2r6a_C DNAG primase, helicase   27.3      26  0.0011   14.0   6.3   41   45-85    101-141 (143)
129 2rhq_B Phenylalanyl-tRNA synth  26.9      27  0.0011   13.9   3.6  176  130-320   450-639 (795)
130 3bx6_A Alpha-1-acid glycoprote  25.4      24   0.001   14.2   1.6   40  288-331   126-168 (192)
131 1beb_A Beta-lactoglobulin; lip  25.1      26  0.0011   14.1   1.6   23  291-317   125-147 (162)
132 3gr1_A Protein PRGH; type III   25.0      23 0.00096   14.4   1.4   25  300-324   132-156 (227)
133 1fio_A SSO1 protein; four heli  25.0      29  0.0012   13.7  11.2   67   32-98      6-72  (196)
134 3o22_A Prostaglandin-H2 D-isom  24.3      29  0.0012   13.6   2.6   23  292-318   125-147 (162)
135 2vg3_A Undecaprenyl pyrophosph  24.2      30  0.0012   13.6   3.9   16  123-138   229-244 (284)
136 1u5p_A Spectrin alpha chain, b  24.2      30  0.0012   13.6  11.3   89   11-100    19-107 (216)
137 1f32_A Major pepsin inhibitor   23.9      24 0.00099   14.3   1.3   33   84-117   104-136 (149)
138 3gr0_A Protein PRGH; type III   23.2      24   0.001   14.3   1.2   25  300-324   132-156 (197)
139 1ul7_A MAP/microtubule affinit  23.0      31  0.0013   13.4   2.9   54  294-347    16-75  (102)
140 3c9i_A Tail needle protein GP2  23.0      31  0.0013   13.4  10.9   20  162-181   205-224 (242)
141 2gr7_A Adhesin; trimeric autot  22.8      31  0.0013   13.4   3.8   47   68-114    25-74  (129)
142 1dzk_A PIG OBP, odorant-bindin  22.6      28  0.0012   13.8   1.4   33  291-327   121-154 (157)
143 1ueh_A Undecaprenyl pyrophosph  22.4      32  0.0013   13.4   4.0   57   72-138   150-206 (253)
144 2wew_A Apolipoprotein M; lipid  22.0      32  0.0014   13.3   2.0   19  290-308   133-151 (172)
145 1eo6_A GATE-16, golgi-associat  21.4      19 0.00078   15.1   0.3   27  378-405    77-103 (117)
146 2hlv_A Odorant-binding protein  21.1      34  0.0014   13.2   1.7   29  291-323   122-151 (160)
147 1bj7_A D 2; allergen, lipocali  20.7      29  0.0012   13.7   1.2   32  291-326   120-152 (156)
148 1dip_A Delta-sleep-inducing pe  20.7      34  0.0014   13.1   1.6   27   74-100    14-40  (78)
149 2p41_A Type II methyltransfera  20.4      35  0.0015   13.1   2.0   12  331-342   219-230 (305)
150 2pms_C Pneumococcal surface pr  20.1      35  0.0015   13.0   7.7   60   37-101    63-122 (125)

No 1  
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00  E-value=0  Score=1246.04  Aligned_cols=424  Identities=38%  Similarity=0.636  Sum_probs=412.1

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             98844785199999999984698958---899999999999999999999999999999999986449987999999999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQ---SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET   77 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~---id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~   77 (430)
                      |||||+||+||+.|++++++||.+.+   +|+++++|++||+++.++++||++||++||+||++++++++  ++++++++
T Consensus         1 MLDik~iRenpe~v~~~l~~R~~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~--~~~l~~~~   78 (455)
T 2dq0_A            1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKS   78 (455)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf             9897887769999999998649963155799999999999999999999999999999999999867997--89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------------------CCC
Q ss_conf             999988644466666778887744310022588112211355540242000156566--------------------566
Q gi|254780680|r   78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSA--------------------IHL  137 (430)
Q Consensus        78 ~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f--------------------~f~  137 (430)
                      ++|+++|+.+++++++++++++++++.|||+||++||+|.||+||++|++||++|.|                    +|+
T Consensus        79 ~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f~~~~~~~~~~~~~~~~~~~~~f~  158 (455)
T 2dq0_A           79 REIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWK  158 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999999999999997276777866687888666646785057556555532111234555565667887


Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      |++|||||+.+|++||++|+|+||||||||+|+||+|||||+|||||++ .++||++|+||+|||+++|+||||+|+|++
T Consensus       159 ~k~H~el~e~l~liDfe~~akvsGsrf~~Lkg~~A~Le~ALi~f~ld~~-~~~Gy~~v~pP~iV~~~~~~gtGqlp~f~~  237 (455)
T 2dq0_A          159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFED  237 (455)
T ss_dssp             CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHH
T ss_pred             CCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHCCCCCCCHH
T ss_conf             6769999877187314333212578647835808899999999999750-001654623861102788734268987601


Q ss_pred             HHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH
Q ss_conf             776431-0002313454114544534205955504208853221078843355434321222210200212127865014
Q gi|254780680|r  218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF  296 (430)
Q Consensus       218 ~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~  296 (430)
                      |+|+++ +|+||||||||||+|||+|++|+.++||+||+|+|||||+||||||||||||||||||+|||||+||+||+|+
T Consensus       238 ~~Y~i~~~dl~Li~TaEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~  317 (455)
T 2dq0_A          238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW  317 (455)
T ss_dssp             TCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH
T ss_pred             CEEEECCCCEEECCCCCCCHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCH
T ss_conf             04785599757436443204444401325787789202465897886555578764012201221426899834897319


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCC
Q ss_conf             57898999999999984106753037801178443402410110100483323753102100764532684733899841
Q gi|254780680|r  297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSL  376 (430)
Q Consensus       297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~  376 (430)
                      ++|++|+.++++||++||||||||+|||||||++|+||||||||||||++|+||||||||||||||||||||+++.++++
T Consensus       318 ~~~e~~~~~~~~i~~~L~lpyrvv~~~s~dlg~~a~~k~DiE~w~P~~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~  397 (455)
T 2dq0_A          318 EWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKP  397 (455)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCCC
T ss_conf             99999999999999975996589881376678771218999988557786245746615435766133445126899963


Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf             010420043228999999998834689983865822231018801307334
Q gi|254780680|r  377 KFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH  427 (430)
Q Consensus       377 ~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~  427 (430)
                      +||||||||||||||+|+||||||||+||+|+||+||||||||.++|++..
T Consensus       398 ~~~HtlNgt~lav~R~l~ailEn~q~~dg~i~iP~~L~pymg~~~~~~~~~  448 (455)
T 2dq0_A          398 RYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEK  448 (455)
T ss_dssp             EECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHSCSEECCCC-
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEEECCCC
T ss_conf             554533064018878999999847389986868854463459958841552


No 2  
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00  E-value=0  Score=1207.03  Aligned_cols=425  Identities=29%  Similarity=0.494  Sum_probs=408.9

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------HHHH
Q ss_conf             9884478519999999998469895---889999999999999999999999999999999998644998------7999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEP---QSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL------SLVD   71 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~---~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~------~~~~   71 (430)
                      |||||+||+|||.|+++|++|++++   ++|+|+++|++||++++++++||++||++||+||++++++++      ++++
T Consensus        40 MLDik~Irenpe~v~~~l~~R~~~~~~~dld~il~ld~e~r~l~~e~e~Lr~erN~~sk~I~~l~~~~~~~~~~~~~e~e  119 (501)
T 1wle_A           40 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQ  119 (501)
T ss_dssp             CCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHH
T ss_conf             62799987699999999997289743342999999999999999999999999999999999998567751000368999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf             99999999998864446666677888774431002258811221135554024200015656656662112202211731
Q gi|254780680|r   72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLM  151 (430)
Q Consensus        72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~li  151 (430)
                      +|++++++|+++++.+++++++++++++.+++.|||+||++||+| +|++|++|++||++|.|+|+||+|||||+.+|++
T Consensus       120 ~L~~~~k~lk~~i~~le~~~~~l~~~l~~~ll~iPNi~~~~VP~G-~e~~n~vv~~~G~~~~f~f~pk~H~elge~l~li  198 (501)
T 1wle_A          120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQARVLHVVGDKPAFSFQPRGHLEIAEKLDII  198 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999974899888557989-8776879840378647888852167776653120


Q ss_pred             CHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH-----HCC
Q ss_conf             000112221675301056488999999999998622320320212356202788986551422476776431-----000
Q gi|254780680|r  152 DFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-----DGR  226 (430)
Q Consensus       152 Dfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~-----d~l  226 (430)
                      ||++|+||||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|...     +++
T Consensus       199 Dfe~aakvsGsrfy~LkG~~A~LerALi~f~ld~l~-~~Gy~~v~pP~iV~~~~~~gtGqlPkfe~~~~~~~~~~~~ddl  277 (501)
T 1wle_A          199 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLI-HRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDL  277 (501)
T ss_dssp             ECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSC
T ss_pred             CHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHH-HCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
T ss_conf             133200354787189828299999999999999755-2598899243550166775542484343122777404432220


Q ss_pred             EECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC--CCHHHHHHHHHH
Q ss_conf             231345411454453420595550420885322107884335543432122221020021212786--501457898999
Q gi|254780680|r  227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLS  304 (430)
Q Consensus       227 ~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p--e~S~~~~e~~~~  304 (430)
                      ||||||||||+|||+|+||+.++||+||+|+|||||+||| +|||||||||||||+|||||+||+|  |+|+++|++|+.
T Consensus       278 ~LipTAEvpL~~~~~~eil~~~~LPik~~a~s~CFR~EAG-~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~l~  356 (501)
T 1wle_A          278 NLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS  356 (501)
T ss_dssp             EECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             0103223453202343203200087114312773055634-456776722566214268999836870133999999999


Q ss_pred             HHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECC
Q ss_conf             99999998410675303780117844340241011010048332375310210076453268473389984101042004
Q gi|254780680|r  305 CAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNG  384 (430)
Q Consensus       305 ~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNg  384 (430)
                      ++++||++||||||||+|||||||++|+||||||||||||++|+|||||||||||||||||||||+++++ ++|||||||
T Consensus       357 ~~e~il~~L~LpyRvv~~~sgDLg~~a~kkyDiE~W~P~~~~y~EvsS~Snc~DfQaRRl~iry~~~~~k-~~~~HTLNg  435 (501)
T 1wle_A          357 LQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNA  435 (501)
T ss_dssp             HHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSC-EEECEEEEE
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHEEEEEEEECCCCCEEEEEEEECCCCHHHHHCCCEEECCCCC-EEEEEECCC
T ss_conf             9999986448854998716777674344457689985588976778877031338663036644079998-556464437


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC
Q ss_conf             322899999999883468998386582223101880130733457
Q gi|254780680|r  385 SGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL  429 (430)
Q Consensus       385 t~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~  429 (430)
                      |||||||+|+||||||||+||||+||+||||||||..+|.|++.+
T Consensus       436 T~lAv~R~l~ailEn~q~~dGsv~iP~~L~pymg~~~i~~p~~~p  480 (501)
T 1wle_A          436 TGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVP  480 (501)
T ss_dssp             EEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEECCCSSCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEECCCCCCC
T ss_conf             415887899998873648998386781325464996752778887


No 3  
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00  E-value=0  Score=1198.35  Aligned_cols=425  Identities=32%  Similarity=0.537  Sum_probs=403.3

Q ss_pred             CCCHHHHHC--CHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------
Q ss_conf             988447851--99999999984698958-89999999999999999999999999999999998644998----------
Q gi|254780680|r    1 MLDIQWIRQ--NPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL----------   67 (430)
Q Consensus         1 MLDik~IRe--n~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~----------   67 (430)
                      |||||+||+  ||+.|++++++|+.+.+ +|+|+++|++||++++++|+||+++|.+||+||++++.++.          
T Consensus         7 MLDikliRe~~n~d~vre~lkkR~~d~dlVD~il~lD~~rR~l~~e~e~Lr~erN~iSK~Ig~~kk~~~~~~d~~~~~~~   86 (484)
T 3lss_A            7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQ   86 (484)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred             ECCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             01189986589869999999874998789999999999999999999999999869999999998468754104454444


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC-CCCCEEEEEEC
Q ss_conf             -----------------799999999999998864446666677888774431002258811221135-55402420001
Q gi|254780680|r   68 -----------------SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS-ANENILIRSVG  129 (430)
Q Consensus        68 -----------------~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~d-e~dNv~i~~~G  129 (430)
                                       .++++|++++++|+++|+.+++++.++++++++++++|||+||++||+|+| |++|++++.||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~ele~~l~~lll~IPNiph~~VP~G~dee~~Nv~i~~~g  166 (484)
T 3lss_A           87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFG  166 (484)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEES
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             43322100000001224469999999999999999999999999999999997289977865788875356718997458


Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCHHHHH-HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH
Q ss_conf             5656656662112202211731000112-221675301056488999999999998622320320212356202788986
Q gi|254780680|r  130 KKPSAIHLSREHFEIGEALGLMDFDRAT-KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG  208 (430)
Q Consensus       130 ~~~~f~f~~k~H~elge~l~liDfe~a~-kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g  208 (430)
                      +++.|  .+++|||||+.++++||++|+ |+||||||||+|+||+|||||+|||+|+|+ ++||++|+||+|||+++|+|
T Consensus       167 ~~~~~--~~k~H~el~e~l~~iD~e~aaskvsGsrf~~lkg~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~g  243 (484)
T 3lss_A          167 NTTKR--AKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLV-KRGYTPFYPPFFLNRDVMGE  243 (484)
T ss_dssp             CTTCC--CSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHHHH
T ss_pred             CCCCC--CCCCHHHHHHHCCCCCHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHCCC
T ss_conf             64666--7765667776558622244223100487489789802588999999999765-16974414863222220376


Q ss_pred             HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             551422476776431---00023134541145445342059555042088532210788433554343212222102002
Q gi|254780680|r  209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE  285 (430)
Q Consensus       209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE  285 (430)
                      |||+|+|++++|++.   +++||||||||||+|||+|++|++++||+||+|+|||||+||||||+|||||||||||+|||
T Consensus       244 tG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE  323 (484)
T 3lss_A          244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIE  323 (484)
T ss_dssp             HSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEE
T ss_pred             CCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
T ss_conf             45776520104031026764246224666366666430102322876563018888854434466778705761134489


Q ss_pred             EEECCCCC--CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             12127865--0145789899999999998410675303780117844340241011010048332375310210076453
Q gi|254780680|r  286 LVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR  363 (430)
Q Consensus       286 ~~~~~~pe--~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR  363 (430)
                      ||+||+|+  +|+++|++|+.++++||+.||||||||+|||||||++|+||||||||||||++|+|||||||||||||||
T Consensus       324 ~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~~sgdlg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQsrR  403 (484)
T 3lss_A          324 QFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQS  403 (484)
T ss_dssp             EEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHHHC
T ss_conf             99984686122289999999999999985487069974058777822334688898866779757787742552376641


Q ss_pred             CCCEEECC-----CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC
Q ss_conf             26847338-----9984101042004322899999999883468998386582223101880130733457
Q gi|254780680|r  364 MNSRYRDP-----NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL  429 (430)
Q Consensus       364 l~iry~~~-----~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~  429 (430)
                      ||||||+.     .+++++||||||||||||||+|+||||||||+|| |+||+||||||||+++|+++..+
T Consensus       404 l~iry~~~~~~~~~~~~~~~~HtlNgt~~A~~R~l~ailEn~q~~dg-~~iP~~L~pym~g~~~i~~~~~~  473 (484)
T 3lss_A          404 VNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENNA  473 (484)
T ss_dssp             HTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCGGGGGGTTTCCEEECCCC-
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEECCCCCC
T ss_conf             40501576555555677504575106300887899888873618997-18880005767997030688888


No 4  
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=100.00  E-value=0  Score=1175.29  Aligned_cols=422  Identities=49%  Similarity=0.825  Sum_probs=410.7

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             98844785199999999984698958--8999999999999999999999999999999999864499879999999999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQ--SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETS   78 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~--id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~   78 (430)
                      |||||+||+||+.|++++++||.+++  +|+|++||++||+++.++|+||++||.+||+||++++++++  +++++++++
T Consensus         1 MlDik~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~--~~~l~~~~~   78 (425)
T 2dq3_A            1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVK   78 (425)
T ss_dssp             CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_conf             989788876999999999870998255599999999999999999999999999999999999867988--999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHH
Q ss_conf             99988644466666778887744310022588112211355540242000156566566621122022117310001122
Q gi|254780680|r   79 TLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATK  158 (430)
Q Consensus        79 ~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~k  158 (430)
                      +|+++++.+++++++++++++++++.|||+||++||+|.+|++|++|++||++|.|+|+||||+|||+.+|++||++|+|
T Consensus        79 ~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~~g~~~~~~f~~k~H~eig~~l~l~Df~~~~k  158 (425)
T 2dq3_A           79 ELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAK  158 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHC
T ss_conf             99999999999999999999999972789878888999872256788337888999989884999998739840566642


Q ss_pred             HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHH
Q ss_conf             2167530105648899999999999862232032021235620278898655142247677643-100023134541145
Q gi|254780680|r  159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLT  237 (430)
Q Consensus       159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~  237 (430)
                      +||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|++ ++++||||||||||+
T Consensus       159 vsGsrf~~l~g~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~  237 (425)
T 2dq3_A          159 LSGSRFTVIAGWGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT  237 (425)
T ss_dssp             HHCSSCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHH
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHH
T ss_conf             36776268628599999999999999998-77987743837668999864156742456530126886164144565088


Q ss_pred             HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             44534205955504208853221078843355434321222210200212127865014578989999999999841067
Q gi|254780680|r  238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       238 ~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      |||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||+||+|++|+++|++|+.++++||++|||||
T Consensus       238 ~~~~~~~~~~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L~l~~  317 (425)
T 2dq3_A          238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPY  317 (425)
T ss_dssp             GGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHCCEEECHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77335074175488403453787786655457677751543210023246641733589999999999999999716870


Q ss_pred             HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             53037801178443402410110100483323753102100764532684733899841010420043228999999998
Q gi|254780680|r  318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL  397 (430)
Q Consensus       318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail  397 (430)
                      |||+|||||||++|+|||||||||||+++|+||||||||||||||||||||++.++++.+||||||||||||||+|+|||
T Consensus       318 rvv~~~~~dlg~~~~~~~DiE~W~P~~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l~ail  397 (425)
T 2dq3_A          318 RVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL  397 (425)
T ss_dssp             EEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEECEEEEECCCCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf             89996788888764257340777230084788988755255666546887665899951556774776208878999999


Q ss_pred             HHCCCCCCCEECCCCCCCCCCCEEEECCC
Q ss_conf             83468998386582223101880130733
Q gi|254780680|r  398 ENYLNADGSVTIPTVLRPYMNNLAVIKKE  426 (430)
Q Consensus       398 En~q~~dg~i~iP~~L~pym~g~~~i~~~  426 (430)
                      |||||+||+|+||+|||||| |.++|.|+
T Consensus       398 En~q~~dg~v~iP~~L~~y~-g~~~i~p~  425 (425)
T 2dq3_A          398 ENYQQEDGSVVVPEVLRDYV-GTDVIRPE  425 (425)
T ss_dssp             HHTBCTTSCEECCTTTHHHH-SCSEECCC
T ss_pred             HHCCCCCCCEECCHHHHHHC-CCCCCCCC
T ss_conf             73518998686882214035-99701679


No 5  
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00  E-value=0  Score=1124.72  Aligned_cols=418  Identities=35%  Similarity=0.555  Sum_probs=401.7

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             98844785199999999984698958899999999999999999999999999999999986449987999999999999
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTL   80 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~L   80 (430)
                      |||||+||+|||.|+++|++||.++++|+|++||++||+++.++++||++||++||+||+++    .++.+++++++++|
T Consensus         1 MlDik~iR~n~e~v~~~l~~R~~~~dld~ll~Ld~~~r~l~~~~e~l~~~rN~lSK~I~k~k----~~~~~~l~~~~~~l   76 (421)
T 1ses_A            1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----PEEKEALIARGKAL   76 (421)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC----HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_conf             98978887599999999986599706899999999999999999999999999999975325----15489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHC
Q ss_conf             98864446666677888774431002258811221135554024200015656656662112202211731000112221
Q gi|254780680|r   81 KEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLS  160 (430)
Q Consensus        81 k~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvs  160 (430)
                      +++++.+++++++++++++++++.|||+||++||+|.+|++| ++++||.+|.|+|++++|||||+.++++|+ +|+|+|
T Consensus        77 k~~i~~le~~~~~~~~~l~~~ll~IPNlp~~~VP~G~de~~n-~i~~~~~~~~f~f~~k~H~ei~e~l~~~d~-~aakis  154 (421)
T 1ses_A           77 GEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANR-EIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVS  154 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSSSGGGCE-EEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHC
T ss_conf             999999886799998877665302221232211124554433-023215775334122106888888654344-455432


Q ss_pred             CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHHHH
Q ss_conf             67530105648899999999999862232032021235620278898655142247677643-10002313454114544
Q gi|254780680|r  161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLTNL  239 (430)
Q Consensus       161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~~~  239 (430)
                      |||||||+|+||+|||||+|||+|++. ++||+++.||+|||+++|+||||+|+|++|+|++ ++++||||||||||+||
T Consensus       155 Gsrf~~l~g~~A~LerALi~f~ld~~~-~~gy~e~~~P~lv~~~~~~gtG~lp~f~~d~y~~~~~~l~LipTaEv~l~~~  233 (421)
T 1ses_A          155 GSRSYALKGDLALYELALLRFAMDFMA-RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL  233 (421)
T ss_dssp             CSSCCCEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHT
T ss_pred             CCCHHCCCCCEEEEEHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             411100069557751657899998740-0000023331455677775037886531023443113442102466306766


Q ss_pred             HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             534205955504208853221078843355434321222210200212127--865014578989999999999841067
Q gi|254780680|r  240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT--REEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~--~pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      |+|++++.++||+||+|+|||||+||||||+|||||||||||+|||||++|  .|++|+++|++|+.++++||++|+|||
T Consensus       234 ~~~~il~~~~LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~i~~~L~lpy  313 (421)
T 1ses_A          234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY  313 (421)
T ss_dssp             TTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             41555446535732577447532223344521034433102455777786145430246799999999999986226731


Q ss_pred             HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             53037801178443402410110100483323753102100764532684733899841010420043228999999998
Q gi|254780680|r  318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL  397 (430)
Q Consensus       318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail  397 (430)
                      |||++||||||++|++||||||||||+++|+||||||||+||||||++|||++++|+ ++||||||||++|+||+|+|||
T Consensus       314 rvv~~~~~dlg~~a~~~~diE~w~P~~~~~~Evss~Sn~~d~qsrrl~i~y~~~~~~-~~~~htlngt~~a~~R~l~ail  392 (421)
T 1ses_A          314 RLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGR-VRYAYTLNNTALATPRILAMLL  392 (421)
T ss_dssp             EEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSC-EEECEEEEEEEEEETHHHHHHH
T ss_pred             HHHHCCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCHHHHHHCCCEEECCCCC-EEEEEECCCCCCHHHHHHHHHH
T ss_conf             102227556775876321407886488967878212020038887615878889998-7866872476037889999999


Q ss_pred             HHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf             834689983865822231018801307334
Q gi|254780680|r  398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEH  427 (430)
Q Consensus       398 En~q~~dg~i~iP~~L~pym~g~~~i~~~~  427 (430)
                      ||||++||+|.||+|||||| |.++|.|.|
T Consensus       393 E~~q~~dg~v~iP~~L~~ym-g~~~i~p~g  421 (421)
T 1ses_A          393 ENHQLQDGRVRVPQALIPYM-GKEVLEPCG  421 (421)
T ss_dssp             HHHBCTTSCEECCGGGHHHH-SSSEECCCC
T ss_pred             HHCCCCCCCEECCHHHHCCC-CCCEEEECC
T ss_conf             97358898880881201424-984354087


No 6  
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus}
Probab=100.00  E-value=0  Score=1012.08  Aligned_cols=419  Identities=34%  Similarity=0.546  Sum_probs=377.0

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
Q ss_conf             98844785199999999984698958899999999999999999999999999999----------------------99
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSA----------------------QI   58 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSK----------------------eI   58 (430)
                      |-|++.+++.+|.+.+.+..+....+.+.++..+++...-+..+.   .++....+                      .|
T Consensus         1 ~~~l~~~~~e~e~~~~~~~e~~~~~e~e~~~~~~e~~~~~~~~i~---~~~~~~~~dL~~a~P~l~~A~~al~~l~k~di   77 (536)
T 3err_A            1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIA---DKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHL   77 (536)
T ss_dssp             --CHHHHHSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             900788777599999999999999999999989999999999999---99999999999835999999999964999789


Q ss_pred             HHHHH---------------------------------------------------------------CC---C------
Q ss_conf             99864---------------------------------------------------------------49---9------
Q gi|254780680|r   59 GQAIA---------------------------------------------------------------EG---N------   66 (430)
Q Consensus        59 g~~k~---------------------------------------------------------------~~---~------   66 (430)
                      .++++                                                               +.   +      
T Consensus        78 ~Elks~~~PP~~V~~v~eaV~illg~~~~~W~~akk~l~~~~Fl~~L~~fdkd~I~~~~i~ki~k~yi~~~~F~~e~i~k  157 (536)
T 3err_A           78 VEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNR  157 (536)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             99972389967999999999999589999989999985735567887646921099999999999755687889999999


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCC
Q ss_conf             --------------879999999999999886444666667788877443100225881122113555402420001565
Q gi|254780680|r   67 --------------LSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP  132 (430)
Q Consensus        67 --------------~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~  132 (430)
                                    .....++.++++.++++|+.+++++.+++++++++++.|||+||++||+|.+| +|++|++||++|
T Consensus       158 ~S~Aa~~L~~WV~A~~~y~~v~k~v~plk~eL~elE~el~e~e~~l~~~ll~lPNi~~~~vP~G~~e-~n~~v~~~g~~~  236 (536)
T 3err_A          158 ASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEE-ANREIKRVGGPP  236 (536)
T ss_dssp             HCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCSSGG-GCEEEEEESCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEECCCC
T ss_conf             8899999999998874499999998766888999998888888999889862258707888999986-786999968988


Q ss_pred             CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC
Q ss_conf             66566621122022117310001122216753010564889999999999986223203202123562027889865514
Q gi|254780680|r  133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI  212 (430)
Q Consensus       133 ~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l  212 (430)
                      .|+|+|++|++||+.+|++| ++|+|+||||||||+|+||+|||||+|||+|++ .++||++++||+|||+++|+||||+
T Consensus       237 ~~~f~pk~H~el~~~l~l~d-~~a~kvsGsrfy~l~g~~A~Le~AL~~f~ld~~-~~~gy~~v~~P~~v~~~~~~gtG~l  314 (536)
T 3err_A          237 EFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHF  314 (536)
T ss_dssp             CCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCT
T ss_pred             CCCCCCCCHHHHHHHCCCCC-HHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH-HHCCCCHHHCHHHHHHHHHHHHCCC
T ss_conf             98999879999963534615-344333178769993859999999999999999-7604502301022246655222478


Q ss_pred             HHHHHHHHHH-HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             2247677643-100023134541145445342059555042088532210788433554343212222102002121278
Q gi|254780680|r  213 PKFADDMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR  291 (430)
Q Consensus       213 p~f~~~~y~~-~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~  291 (430)
                      |+|++++|.+ ++++||||||||||+|||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||++|+
T Consensus       315 p~f~~~~y~~~~~~~~LipTaEv~l~~~~~~~i~~~~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~  394 (536)
T 3err_A          315 PAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTE  394 (536)
T ss_dssp             TTTGGGCCEETTTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECC
T ss_conf             53024555420023101566642034454075474865897655469824555565575442133313431489998536


Q ss_pred             C--CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE
Q ss_conf             6--50145789899999999998410675303780117844340241011010048332375310210076453268473
Q gi|254780680|r  292 E--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR  369 (430)
Q Consensus       292 p--e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~  369 (430)
                      |  ++|+.+|++|+.++++||+.|+||||||++||||||++|++||||||||||+++|+||||||||+|||||||||||+
T Consensus       395 ~~~e~s~~~~~~~l~~~e~i~~~L~lpyrvv~~~~~dlg~~a~~kyDiE~w~P~~~~y~Ev~S~Snc~DfqsrRl~iry~  474 (536)
T 3err_A          395 ASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR  474 (536)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCEEEEECCCCCEEEEECHHCHHHHHHHHCCCEEE
T ss_conf             51345799999999999999742488559996777768867875245189854879877573110101188885478888


Q ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf             3899841010420043228999999998834689983865822231018801307334
Q gi|254780680|r  370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH  427 (430)
Q Consensus       370 ~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~  427 (430)
                      +++|+ .+||||||||+||+||+|+|||||||++||+|.||+|||||| |.++|+|..
T Consensus       475 ~~~g~-~~~~htlngt~~a~~R~l~ailEn~q~~dg~i~iP~~L~~y~-~~~~i~p~~  530 (536)
T 3err_A          475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPGA  530 (536)
T ss_dssp             CTTSC-EEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC-
T ss_pred             CCCCC-EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHCCC-CCCEECCCC
T ss_conf             89998-874688207510888999999996569999884882322424-996545663


No 7  
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00  E-value=0  Score=433.06  Aligned_cols=300  Identities=17%  Similarity=0.171  Sum_probs=258.3

Q ss_pred             HHCCCCCCCHHHHC----CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHH
Q ss_conf             10022588112211----35554024200015656656662112202211731000112221675301056488999999
Q gi|254780680|r  103 SCIPNVPLEEVPIG----TSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL  178 (430)
Q Consensus       103 l~IPNi~~~~VP~G----~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~AL  178 (430)
                      -++.|++..++|..    ++|..+ ++... .++.+.|. .+|.+++++++++.     +.+|+|++++.+.||+|.|||
T Consensus       166 ~ri~~l~~~~~~~~~~~~~~e~~~-~~~e~-~~r~~~~~-~d~~~~~~~~g~i~-----~~~~~G~~~~~p~g~~L~raL  237 (522)
T 2cja_A          166 DRILTLLEEKIEAAQYGAKAEHWN-LLWQR-EPMEHPFK-EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTF  237 (522)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCC-EEEEC-CCCCCCCC-SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHCCCCCHHHHH-HHHHC-CCCCCCCC-CCHHHHHHHCCCCH-----HCCCCCEEEECCHHHHHHHHH
T ss_conf             998753023055523555166777-76431-22233112-78899998647600-----147686389866799999999


Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH----------------------------------HH
Q ss_conf             99999862232032021235620278898655142247677643----------------------------------10
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT----------------------------------TD  224 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~----------------------------------~d  224 (430)
                      .+|++|.+..+.||++|.+|.|++.+++++|||+|.|.++||.+                                  ++
T Consensus       238 e~~~~e~~~~k~G~~ev~~P~li~~el~~~sGh~~~f~~~m~~V~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~  317 (522)
T 2cja_A          238 EKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEP  317 (522)
T ss_dssp             HHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCC
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             99999998886398798788633799995478856674643563256655410111221110012334321110114566


Q ss_pred             CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf             00231345411454453420595550420885322-10788433554343212222102002121278650145789899
Q gi|254780680|r  225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAP-SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML  303 (430)
Q Consensus       225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~-cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~  303 (430)
                      +++|.||+|+|++++|+++++++.+||+||+++|+ |||.|+|+    ++||+|||||+|+|++.+|+||++.+++++|+
T Consensus       318 ~y~L~Pt~c~~~~~~~~~~~~s~~dLPlk~~~~s~~~fR~E~g~----~~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l  393 (522)
T 2cja_A          318 IGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG----IHGIERVDEFHRIEIVWIGTKEEVLKCAEELH  393 (522)
T ss_dssp             CEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSS----CCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCC----CCCCCEEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_conf             56660577199999971863570002488874040268745778----77550246778643999956888999999999


Q ss_pred             HHHHHHHH-HHCCHHHHCCCC---------CHHCCCHHHEEEEEEEECCCC---CCEEEEEEECCCCCHHHHHCCCEEEC
Q ss_conf             99999999-841067530378---------011784434024101101004---83323753102100764532684733
Q gi|254780680|r  304 SCAEEILK-RLDLHYRVVSLC---------TGDLGFSACKTYDLEVWLAGQ---NLYREISSCSTCGNFQSRRMNSRYRD  370 (430)
Q Consensus       304 ~~~~~i~~-~L~lpyRvv~~~---------sgdlg~~a~~~~DiE~w~P~~---~~y~Ev~S~Snc~D~QsrRl~iry~~  370 (430)
                      +.+.++|. .|+||||++..+         .+++++++..+||+|+|+|++   ++|.||+||++|+||||+|++|+.  
T Consensus       394 ~~~~~if~~~L~L~~r~v~~~~~~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~--  471 (522)
T 2cja_A          394 DRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL--  471 (522)
T ss_dssp             HHHHHHHHHTSCCCEEEEEC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEE--
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC--
T ss_conf             999999999709845993256544566555112335621240238854256778871899866264342637309738--


Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEE
Q ss_conf             8998410104200432289999999988346899838658222310188013
Q gi|254780680|r  371 PNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAV  422 (430)
Q Consensus       371 ~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~  422 (430)
                      .+   .+++|| +++|+++.|+++|+||+|+...+  ..|+++|+|+|+...
T Consensus       472 ~~---~~~v~~-~c~GiGleR~i~alle~~g~d~~--~WP~~i~~~vg~~~~  517 (522)
T 2cja_A          472 QS---GDELWS-GCSGVGLERWAAVFLAQKGLDPA--NWPEEFRNRVGEMPK  517 (522)
T ss_dssp             TT---CCCEEE-EEEEEEHHHHHHHHHHHHCSCGG--GSCHHHHHHHCSCCC
T ss_pred             CC---CCEEEE-ECCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCC
T ss_conf             99---998999-37672999999999996599999--988699998648561


No 8  
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Probab=100.00  E-value=0  Score=406.53  Aligned_cols=285  Identities=16%  Similarity=0.173  Sum_probs=245.6

Q ss_pred             CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf             02258811221135554024200015656656662112202211731000112221675301056488999999999998
Q gi|254780680|r  105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMID  184 (430)
Q Consensus       105 IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld  184 (430)
                      +|+..|..||+.+            ++|.+.+  ..|.++++.++.+|+++|++.+++||+++++.+++||+++..    
T Consensus        15 vprgs~~~~~~~~------------~~p~~a~--~~~~~l~~~~~~~~~~~ga~g~y~~~~~~~~v~~~le~~i~~----   76 (346)
T 3mf2_A           15 VPRGSHMNIAVLP------------NSPDTAP--QIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS----   76 (346)
T ss_dssp             ------------------------------------CCTTGGGHHHHEEEEEETTEEEEEHHHHHHHHHHHHHHHH----
T ss_pred             CCCCCCCCCEECC------------CCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH----
T ss_conf             6578866540137------------8986456--640689999852222216755564289999999999999999----


Q ss_pred             HHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----------------------------HCCEECCCCCCHH
Q ss_conf             622320320212356202788986551422476776431----------------------------0002313454114
Q gi|254780680|r  185 LHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----------------------------DGRWLIPTSEVSL  236 (430)
Q Consensus       185 ~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----------------------------d~l~Li~TaEvpL  236 (430)
                       + .++||+++..|.+++.+.+++||++++|.+++|.+.                            .+++|+||+|+++
T Consensus        77 -~-~~~G~~~v~~P~l~~~e~~~~sg~~~~f~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Pt~c~~i  154 (346)
T 3mf2_A           77 -H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPV  154 (346)
T ss_dssp             -T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSSSTTH
T ss_pred             -H-HHCCCEEEECCCEECHHHHHHCCCHHHCHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHH
T ss_conf             -9-97798698688543499997548621043340684136775201222110012344311134776568707871888


Q ss_pred             HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             54453420595550420885322107884335543432122221020021212786501457898999999999984106
Q gi|254780680|r  237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH  316 (430)
Q Consensus       237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp  316 (430)
                      ++++++++. ..+||++|+.+|+|||.|++      +||+|+|||+++|++.||+|+++.++++++++.++++|+.||||
T Consensus       155 ~~~~~~~~~-~~dlP~~~~~~~~~fR~E~~------~Gl~R~reF~~~E~~~f~~~e~~~~~~~~~~~~~~~i~~~LgL~  227 (346)
T 3mf2_A          155 YPIAASRGP-LPKGGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT  227 (346)
T ss_dssp             HHHHHTTCS-CCTTCEEEEEEEEEECCCCC------SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHCCCCC-CCCCCEEEEEECCEEECCCC------CCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999725735-51348799997478837899------99932377899999999858999999999999999999987997


Q ss_pred             HHHCCCCC---HHCCCHHHE-------EEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCH
Q ss_conf             75303780---117844340-------24101101004833237531021007645326847338998410104200432
Q gi|254780680|r  317 YRVVSLCT---GDLGFSACK-------TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSG  386 (430)
Q Consensus       317 yRvv~~~s---gdlg~~a~~-------~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~  386 (430)
                      ||++..|+   ||+|..+.+       +||+|+|+|++++|.||+|++||+||||+|++|+|.+.     +++|| +..|
T Consensus       228 ~~~~~a~d~~~gd~g~~~~~~~~~~~~k~d~e~~~p~~~~~~evgsi~~~gd~~~~r~~i~~~d~-----~~~h~-~~~G  301 (346)
T 3mf2_A          228 FRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANG-----EPAHT-GCVA  301 (346)
T ss_dssp             CEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCBCTTS-----SBCEE-EEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEECC-----CEEEE-CCCC
T ss_conf             69998258888744148776332203247999980899977888316414775673359888189-----97887-6774


Q ss_pred             HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEC
Q ss_conf             28999999998834689983865822231018801307
Q gi|254780680|r  387 VAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIK  424 (430)
Q Consensus       387 ~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~  424 (430)
                      +++.|+++||||+|+.+.+  .-|+..|.+++-...+.
T Consensus       302 ~g~eR~v~aliE~h~~~~~--~Wp~~vr~~l~l~P~~a  337 (346)
T 3mf2_A          302 FGMDRLAVAMFHTHGTDLS--AWPAKVRDILGLQPHVA  337 (346)
T ss_dssp             EEHHHHHHHHHHHHCSCGG--GSCHHHHHHTTSCCC--
T ss_pred             CHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCCCC
T ss_conf             6599999999996799989--88588887742785333


No 9  
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00  E-value=3.1e-35  Score=280.96  Aligned_cols=293  Identities=18%  Similarity=0.232  Sum_probs=251.6

Q ss_pred             HHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHH
Q ss_conf             10022588112211355540242000156566566621122022117310001122216753010564889999999999
Q gi|254780680|r  103 SCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFM  182 (430)
Q Consensus       103 l~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~  182 (430)
                      -.+||.+|-..|.++.+.     +..|++.. +|. .=+.+|.++.+|+|+..+++    |++++...|+++.++|.+|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~-----r~~~~~~~-~f~-~w~~~~~~~a~l~d~~~~vk----G~~~~lP~G~~i~~~i~~~~   81 (501)
T 1nj1_A           13 GLVPRGSHMQKPIKKDPN-----RYHGEKMT-EFS-EWFHNILEEAEIIDQRYPVK----GMHVWMPHGFMIRKNTLKIL   81 (501)
T ss_dssp             --------------------------------CHH-HHHHHHHHHTTCEECCCSST----TCCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCC-----CCCCCCHH-HHH-HHHHHHHHHCCCCCCCCCCC----EEEEECCCHHHHHHHHHHHH
T ss_conf             406688743455566755-----35577455-516-99999999708823389997----15997703999999999999


Q ss_pred             HHHHHHHCCCCEEHHHHHCCHH-HHHHHHHCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCE
Q ss_conf             9862232032021235620278-8986551422476776431--------000231345411454453420595550420
Q gi|254780680|r  183 IDLHTSEHGYTEVSAPLLVRDE-AMYGTGQIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLR  253 (430)
Q Consensus       183 ld~~~~~~Gy~~v~~P~lv~~~-~~~gtG~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik  253 (430)
                      -+. . ++||.+|.+|.++..+ ....+|+++.|.++||.+.        ++++|.||+|.+++.+|++.+..+.+||+|
T Consensus        82 r~~-~-~~G~~ev~tP~l~~~~~L~~~SGh~~~f~eemf~v~~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~SyrdLPlr  159 (501)
T 1nj1_A           82 RRI-L-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMR  159 (501)
T ss_dssp             HHH-H-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEE
T ss_pred             HHH-H-HCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf             999-9-85998997886405789866645655446477278416754567606871378888999996320136679868


Q ss_pred             EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE--EECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHH
Q ss_conf             885322107884335543432122221020021--212786501457898999999999984106753037801178443
Q gi|254780680|r  254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL--VSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSA  331 (430)
Q Consensus       254 ~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~--~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a  331 (430)
                      ++.+++|||.|.+.    ++||+|++||+.++.  +..|+|+++++++..|+....++|+.|++||++...+.+|....+
T Consensus       160 i~q~g~~fR~E~~~----~~gllR~REF~q~ed~~~~~~~~e~~~~e~~~~~~~y~~~~~~l~i~~~~~~~~~~d~~~ga  235 (501)
T 1nj1_A          160 FYQVVNTFRYETKH----TRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGS  235 (501)
T ss_dssp             EEEEEEEECCCCSC----CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTC
T ss_pred             EEEECHHHCCCCCC----CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf             88762121254001----57706999999850003467998999999999999999998641513011012465545562


Q ss_pred             HEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf             40241011010048332375310210076453268473389984101042004322899999999883468998386582
Q gi|254780680|r  332 CKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPT  411 (430)
Q Consensus       332 ~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~  411 (430)
                      ..++++|+|+|. +...|++++.++++..+++.++.|.+.+|+ ..++|+..-  -...|++.+++|.|...+| ..+|-
T Consensus       236 ~~~~~~e~~~~~-G~~iev~t~~~Lg~~~s~~f~i~y~d~~g~-~~~v~~~~~--G~~~R~i~~lie~~~d~~g-l~lP~  310 (501)
T 1nj1_A          236 EYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETPEGD-HEYVHQTCY--GLSDRVIASVIAIHGDESG-LCLPP  310 (501)
T ss_dssp             SEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECTTSC-EEECEEEEE--EECTHHHHHHHHHTCCSSS-EECCT
T ss_pred             HHHCCHHHHHCC-CCCEEEECEECCCCHHHHHCCCCCCCCCCC-CEEEECCCH--HHHHHHHHHHHHHHHHCCC-CEECC
T ss_conf             320000122203-760157330105545767503430245686-302201101--2544364787766213038-53262


Q ss_pred             CCCCCC
Q ss_conf             223101
Q gi|254780680|r  412 VLRPYM  417 (430)
Q Consensus       412 ~L~pym  417 (430)
                      .|-|+=
T Consensus       311 ~lAP~q  316 (501)
T 1nj1_A          311 DVAAHQ  316 (501)
T ss_dssp             TTSSCS
T ss_pred             CCCCEE
T ss_conf             117614


No 10 
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.93  E-value=2.4e-25  Score=207.44  Aligned_cols=264  Identities=17%  Similarity=0.208  Sum_probs=230.0

Q ss_pred             CCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCHHHH
Q ss_conf             112--202211731000112221675301056488999999999998622320320212356202788986-55142247
Q gi|254780680|r  140 EHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIPKFA  216 (430)
Q Consensus       140 ~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp~f~  216 (430)
                      +.|  ++..+-+|+|....+    +|+|++.-.|.++-+.|++|+-+. ..+.||.+|..|.|+..+.+.. +|++..|.
T Consensus        25 ~~wy~~v~~~a~l~d~~~~v----~G~~~~lP~G~~i~~~i~~~~~~~-~~~~G~~ev~~P~l~p~~~l~k~sgh~e~f~   99 (518)
T 3ial_A           25 ADWFDAIMDAAELVDRRYPV----KGCVVFRPYGFFMENAIMRLCEEE-YAKVGISQILFPTVIPESFLKKESDHIKGFE   99 (518)
T ss_dssp             HHHHHHHHHHTTCEETTSSS----TTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHTSSHHHHHHHG
T ss_pred             HHHHHHHHHHCCCCCCCCCC----CCCEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf             89999999964770148999----801897710999999999999999-9985997998976067899998867701026


Q ss_pred             HHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf             6776431--------00023134541145445342059555042088532210788433554343212222102002121
Q gi|254780680|r  217 DDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS  288 (430)
Q Consensus       217 ~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~  288 (430)
                      ++||.++        +.++|-||+|..++.++++.+-++.+||+++.-+++|||-|..    .++||+|+.+|..-|+..
T Consensus       100 ~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~i~SyrdLPl~i~Q~g~~fR~E~~----~~~gllR~REF~~~E~ht  175 (518)
T 3ial_A          100 AECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETK----NTKPLIRVREIHWNEAHC  175 (518)
T ss_dssp             GGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCC----SCBTTTBCSEEEEEEEEE
T ss_pred             CCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC----CCCCEEHHHEEEHHHCCC
T ss_conf             3446984488655566177635887999999954457655568144553101012234----564000202142642313


Q ss_pred             CC-CCCCHHHHHHHHHHHHHHHH-HHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC
Q ss_conf             27-86501457898999999999-98410675303780117844340241011010048332375310210076453268
Q gi|254780680|r  289 IT-REEDSFTEHERMLSCAEEIL-KRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS  366 (430)
Q Consensus       289 ~~-~pe~S~~~~e~~~~~~~~i~-~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i  366 (430)
                      ++ +.+++..+..+++.....++ ..|.+|+....-...+-.+.+..++++|+++|. +...+++++-..+.--|++.++
T Consensus       176 ~~~~~eea~~~~~~~~~~y~~~~~~~l~i~~~~~~~~~~~k~~~a~y~~~iE~~~~~-g~~~q~gtt~~Lg~~fsk~f~i  254 (518)
T 3ial_A          176 CHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGIHNLGQRFSSTFDI  254 (518)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCCCCCCHHHHHHHH-CCCCCCCCEEECCCCCCCCCEE
T ss_conf             214788887665555677776431112132001113378754895233117788763-3673410178551105633226


Q ss_pred             EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf             473389984101042004322899999999883468998386582223101
Q gi|254780680|r  367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM  417 (430)
Q Consensus       367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym  417 (430)
                      .|.+++++. +++|+... |+ +.|+|.|++|.|...+| ++.|..|-||=
T Consensus       255 ~y~d~~g~~-~~~~~~s~-Gi-~~Rli~alie~~~D~~g-l~lP~~lAP~q  301 (518)
T 3ial_A          255 LYANKANES-VHPYLTCA-GI-STRVLACALSIHGDSGG-LVLPPLIAPIH  301 (518)
T ss_dssp             CEECTTCCE-ECCEEEEE-EE-ETHHHHHHHHHHCBTTB-CCCCGGGCSCS
T ss_pred             EEECCCCCE-EEEEEEEC-CH-HHHHHHHHHHHHHHCCC-CCCCCCCCCCE
T ss_conf             999899967-54321102-21-46799999997510268-75786727876


No 11 
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.92  E-value=8.8e-25  Score=203.28  Aligned_cols=267  Identities=20%  Similarity=0.214  Sum_probs=230.9

Q ss_pred             CCCCCCCCCCCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH
Q ss_conf             656656662112--202211731000112221675301056488999999999998622320320212356202788986
Q gi|254780680|r  131 KPSAIHLSREHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG  208 (430)
Q Consensus       131 ~~~f~f~~k~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g  208 (430)
                      +++.+|   +.|  +|..+-+++|..   .|  +|+|++.-.|.++-+.|.+|+-+. ..+.||.+|.+|.++..+.+..
T Consensus         9 ~~~~~f---~~wy~~~~~~a~l~d~~---~i--~G~~~~lP~G~~i~~~i~~~i~~~-~~~~G~~ev~~P~li~~~~l~k   79 (477)
T 1hc7_A            9 PQSQDF---SEWYLEVIQKAELADYG---PV--RGTIVVRPYGYAIWENIQQVLDRM-FKETGHQNAYFPLFIPMSFLRK   79 (477)
T ss_dssp             CHHHHH---HHHHHHHHHHTTSEEEC---SS--TTCEEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEESTTC--
T ss_pred             CCCCCC---HHHHHHHHHHCCCCCCC---CC--CCEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHH
T ss_conf             853361---48999999970774147---88--962888855999999999999999-9985997998966157899998


Q ss_pred             -HHHCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             -551422476776431--------00023134541145445342059555042088532210788433554343212222
Q gi|254780680|r  209 -TGQIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH  279 (430)
Q Consensus       209 -tG~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH  279 (430)
                       .|++..|.++||.+.        +.++|-||+|...+.+|++.+.++.+||+|+..+++|||-|.-     ++|++|+-
T Consensus        80 ~sgh~~~f~~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~-----~~gllR~R  154 (477)
T 1hc7_A           80 EAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-----TRPFLRTS  154 (477)
T ss_dssp             -------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-----CBTTTBCS
T ss_pred             HHCCHHHCCCCEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCEECCCC-----CCCCCEEE
T ss_conf             8676413175607885168411024314689766889999962355202488888615301000246-----77753489


Q ss_pred             EEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-HHCCCHHHEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf             102002121-278650145789899999999998410675303780-117844340241011010048332375310210
Q gi|254780680|r  280 QFWKCELVS-ITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCT-GDLGFSACKTYDLEVWLAGQNLYREISSCSTCG  357 (430)
Q Consensus       280 QF~KVE~~~-~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~s-gdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~  357 (430)
                      +|.--|... +|+++++.++++.+++....++..|..++.++-..+ .+-++.+..++++|+.+|. ++..+++.+.+++
T Consensus       155 eF~~~D~ht~~~t~e~a~~~~~~~~~~y~~~~~~~~~~~~~~g~~~~~e~~~ga~~~~~ie~~~~~-Gr~~q~gt~~~lg  233 (477)
T 1hc7_A          155 EFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLG  233 (477)
T ss_dssp             EEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTT-SCEEEEEEEEEEE
T ss_pred             EEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHC-CHHHHCCCEEECC
T ss_conf             998751244422388889999999999999976431111120565455454463434134676644-5044327333034


Q ss_pred             CHHHHHCCCEEECCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf             07645326847338998410104200-4322899999999883468998386582223101
Q gi|254780680|r  358 NFQSRRMNSRYRDPNSKSLKFTHTLN-GSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM  417 (430)
Q Consensus       358 D~QsrRl~iry~~~~~~~~~~~htlN-gt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym  417 (430)
                      .-.|++.++.|.+++|+ .+++|+-. |++   .|+|+|++|.|-..+| ++.|..|-|+=
T Consensus       234 ~~fs~~f~i~y~d~~g~-~~~~~~~~~Gi~---~R~i~alie~h~d~~G-l~lP~~lAP~Q  289 (477)
T 1hc7_A          234 ENFARAFDIKFQDRDLQ-VKYVHTTSWGLS---WRFIGAIIMTHGDDRG-LVLPPRLAPIQ  289 (477)
T ss_dssp             THHHHHTTCEEECTTSC-EEECEEEEEEEE---THHHHHHHHHHCBTTB-CCCCTTTCSCS
T ss_pred             CCHHHHCCCEEECCCCC-EEEEEEEECCCC---HHHHHHHHHHHCCCCC-CCCCHHCCCCE
T ss_conf             30456526556435784-333566640441---6789999998326767-42480028405


No 12 
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.92  E-value=4.6e-24  Score=197.96  Aligned_cols=264  Identities=17%  Similarity=0.240  Sum_probs=230.4

Q ss_pred             CCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH-HCHHHH
Q ss_conf             112--20221173100011222167530105648899999999999862232032021235620278898655-142247
Q gi|254780680|r  140 EHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG-QIPKFA  216 (430)
Q Consensus       140 ~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG-~lp~f~  216 (430)
                      +.|  +|.++-+|+|+...+    +|++++.-.|+++-+.+.+++-+. ..+.||.+|.+|.+++.+.+..+| ++..|.
T Consensus         8 ~~wy~~~~~~a~l~~~~~~v----kG~~~~lP~G~~i~~~ie~~~r~~-~~~~G~~ei~tP~l~~~~l~~k~~~h~d~f~   82 (459)
T 1nj8_A            8 SEWYSDILEKAEIYDVRYPI----KGCGVYLPYGFKIRRYTFEIIRNL-LDESGHDEALFPMLIPEDLLAKEAEHIKGFE   82 (459)
T ss_dssp             HHHHHHHHHHTSSCBCCSTT----SSCCBBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHCSSSGGGG
T ss_pred             HHHHHHHHHHCCCCCCCCCC----CCCEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf             78899999975981058999----971788845999999999999999-9985998998985378899987416724137


Q ss_pred             HHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEE
Q ss_conf             6776431--------000231345411454453420595550420885322107884335543432122221020--021
Q gi|254780680|r  217 DDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CEL  286 (430)
Q Consensus       217 ~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~  286 (430)
                      ++||.+.        +.+.|-||+|.+++.+|.+.+..+.+||+|+.-+++|||.|..    .++|++|+.||..  ++-
T Consensus        83 ~Em~~v~~~g~~~~~~~~~LrPt~e~~~~~~~~~~~~s~rdLPlrl~q~g~~fR~E~~----~~~~~lR~rEF~q~~~~h  158 (459)
T 1nj8_A           83 DEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK----HTRPLIRLREIMTFKEAH  158 (459)
T ss_dssp             GGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS----CCBTTTBCSBCSCEEEEE
T ss_pred             CCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCC----CCCCCEEEEEEEEECEEE
T ss_conf             4637883278655576231117996899999986513225567189850412555332----356676999997512367


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC
Q ss_conf             21278650145789899999999998410675303780117844340241011010048332375310210076453268
Q gi|254780680|r  287 VSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS  366 (430)
Q Consensus       287 ~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i  366 (430)
                      +..+++++..+....|++....++..+.+||.+..-+..+....+..+++++.++|.. .-.++.++.+.++..+++.+|
T Consensus       159 ~~~~~~~e~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~~~q~~t~~~lg~~~~~~~~i  237 (459)
T 1nj8_A          159 TAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDG-RTMQIATVHNLGQNFSKTFEI  237 (459)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTTS-CEEEEEEEEEEETHHHHHTTC
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCCCCHHHCC-CCEEEEEEEECCCCCCCCCCE
T ss_conf             7518817899999999999999985244341320001223345303310111111136-640563155146521300134


Q ss_pred             EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf             473389984101042004322899999999883468998386582223101
Q gi|254780680|r  367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM  417 (430)
Q Consensus       367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym  417 (430)
                      .|.+.+++ .+++|...- ++ ..|++.++++.|....| .++|.-+-|+-
T Consensus       238 ~~~~~~~~-~~~~~~~s~-gi-~~rli~~~i~~~~d~~G-l~lpp~iap~q  284 (459)
T 1nj8_A          238 IFETPTGD-KDYAYQTCY-GI-SDRVIASIIAIHGDEKG-LILPPIVAPIQ  284 (459)
T ss_dssp             EEECTTSS-EEECEEEEE-EE-CTHHHHHHHHHHCBTTB-CCCCTTSCSSS
T ss_pred             EEECCCCC-CCCEEECCC-CH-HHHHHHHHHHHHHHHCC-CCCCCCCCCCC
T ss_conf             53045787-444121131-12-23677788987654316-51233335663


No 13 
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91  E-value=9.9e-25  Score=202.89  Aligned_cols=264  Identities=20%  Similarity=0.293  Sum_probs=217.2

Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      -+||-.||+.++|+.|..   -+|+|+|++.-.|+++-+.|.+|+-+. ..+.||.+|.+|.+.+.+....+|++.++.+
T Consensus       240 ~rdhr~lg~~~~lf~f~~---~~~~G~~~wlP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~~Lw~~SGh~~~y~~  315 (645)
T 1nyr_A          240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDK-EVSMGYDHVYTPVLANVDLYKTSGHWDHYQE  315 (645)
T ss_dssp             HTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHH-HHHTTEEECBCCSEEETHHHHHHTHHHHCTT
T ss_pred             HCCHHHHHHHCCCEECCC---CCCCCEEEEHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCCCCHHHHHCCCCCCEECC
T ss_conf             455666665225477565---358960773332899999999999999-9860854621642146556531566341114


Q ss_pred             HHHHH-----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             77643-----1000231345411454453420595550420885322107884335543432122221020021212786
Q gi|254780680|r  218 DMFCT-----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE  292 (430)
Q Consensus       218 ~~y~~-----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p  292 (430)
                      .+|..     ++.++|-||+|-+.+.+|+..+..+.+||+|++-+++|||.|.-  |+ ..||.|+.+|..-++..||++
T Consensus       316 ~m~~~~~~~~~e~~~LrP~~~~~~~~~~~~~~~SyrdLPlrl~qig~~fR~E~~--~~-~~gl~R~ReF~q~d~h~F~~~  392 (645)
T 1nyr_A          316 DMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS--GA-VSGLQRVRGMTLNDSHIFVRP  392 (645)
T ss_dssp             SSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT--TT-CBTTTBCSEEEEEEEEEEECG
T ss_pred             CEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC--CC-CCCCCCEEEEEECCCEEEECH
T ss_conf             202566416664240456564314577775320345688642454004446654--45-666551234897263587070


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCC----------------------------
Q ss_conf             5014578989999999999841067530378011784434024101101004----------------------------
Q gi|254780680|r  293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ----------------------------  344 (430)
Q Consensus       293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~----------------------------  344 (430)
                      +++.++..+++....++|+.||+.+..+.+.+++-+.++..-.+-+.|--..                            
T Consensus       393 ~q~~~e~~~~~~~~~~vy~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~k~  472 (645)
T 1nyr_A          393 DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL  472 (645)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
T ss_conf             77999999999999999999689734778741689871220462677789999888889863975121246110147752


Q ss_pred             -------CCEEEEEEECCCCCHHHHHCCCEEECCCCCCCC--EEEE-ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf             -------833237531021007645326847338998410--1042-004322899999999883468998386582223
Q gi|254780680|r  345 -------NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK--FTHT-LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR  414 (430)
Q Consensus       345 -------~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~--~~ht-lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~  414 (430)
                             ..-.+..+.-......+.|.++.|.+.++.+..  .+|. +-|   .+.|++++++|.+.     .+.|-.|-
T Consensus       473 ~~~~~~~~~~~~~~~t~qld~~~~~~f~l~y~~~~~~~~~p~~i~~gi~G---~ieR~ia~liE~~~-----g~lP~~LA  544 (645)
T 1nyr_A          473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLTEETK-----GAFPTWLA  544 (645)
T ss_dssp             EEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHT-----TCCCTTTC
T ss_pred             CCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCC---HHHHHHHHHHHHCC-----CCCCCCCC
T ss_conf             00010015871001110012357732125897044113425401343310---89999999735318-----86898728


Q ss_pred             CC
Q ss_conf             10
Q gi|254780680|r  415 PY  416 (430)
Q Consensus       415 py  416 (430)
                      ||
T Consensus       545 P~  546 (645)
T 1nyr_A          545 PK  546 (645)
T ss_dssp             SS
T ss_pred             CC
T ss_conf             85


No 14 
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.91  E-value=1.5e-23  Score=194.09  Aligned_cols=264  Identities=19%  Similarity=0.259  Sum_probs=215.0

Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      -+||-.||+.++|+.|..-    |+|+|++.-.|.++-+.|.+++-+. ..+.||.+|.+|.+.+.+...-+|++..+.+
T Consensus       241 ~rdhr~lg~~~~lf~~~~~----~~G~~~~lP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~eLw~~sg~~d~~~e  315 (642)
T 1qf6_A          241 KRDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD  315 (642)
T ss_dssp             TTCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEETHHHHHHSHHHHHGG
T ss_pred             HHHHHHHHHHHHHHEECCC----CCCEEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCC
T ss_conf             6407889987578603367----8825887720999999999999999-9976989986254676567754762222233


Q ss_pred             HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             776431---00023134541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r  218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED  294 (430)
Q Consensus       218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~  294 (430)
                      .+|...   ++++|-||.|.+.+.+|++.+..+.+||+|+.-+++|||-|.-  | ...||.|+-+|..-+..+||++++
T Consensus       316 ~m~~~~~~~~~~~L~P~~e~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~--~-~~~Gl~R~ReF~q~Da~~f~~~~~  392 (642)
T 1qf6_A          316 AMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ  392 (642)
T ss_dssp             GCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG--G-GCBTTTBCSEEEEEEEEEEECGGG
T ss_pred             CEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC--C-CCCCCCCCCCCEECCEEEEECCHH
T ss_conf             0787622564256547886179999985012324478589997233368867--5-654532011202545479955624


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-------------------------------HHEEEEEEEECCC
Q ss_conf             145789899999999998410675303780117844-------------------------------3402410110100
Q gi|254780680|r  295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-------------------------------ACKTYDLEVWLAG  343 (430)
Q Consensus       295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-------------------------------a~~~~DiE~w~P~  343 (430)
                      +.++..+++....++|+.||+++-.|.++++..+..                               +.....||+.++-
T Consensus       393 ~~~e~~~~~~~~~~i~~~~Gl~~~~v~lst~~e~~~gs~e~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~gpkid~~~~d  472 (642)
T 1qf6_A          393 IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYD  472 (642)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECC
T ss_conf             59999999999999999819955899952587666787889999889999999966997124146544468760368604


Q ss_pred             -CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf             -48332375310210076453268473389984101042004322-89999999988346899838658222310
Q gi|254780680|r  344 -QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY  416 (430)
Q Consensus       344 -~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py  416 (430)
                       .++..+++-+- ...-.+.|.++.|.+.+|.+ +.+.++..+.. .+.|++++++|++    | .+.|..|-||
T Consensus       473 ~~gr~~~~~tiq-ld~~~~~~~~~~y~~~~g~~-~~~~~i~~~~~G~ieR~ia~liE~~----g-~~~P~~lAP~  540 (642)
T 1qf6_A          473 CLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEF----A-GFFPTWLAPV  540 (642)
T ss_dssp             TTCCEEEEEEEE-EESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHH----T-TCCCTTTCSS
T ss_pred             CCCCCEEEEEEE-EECCCCCCCCCEEECCCCCC-CCCEEEEECCCCHHHHHHHHHHHHC----C-CCCCCCCCCC
T ss_conf             667402652698-65355531320134554453-0355774166418999999999861----8-9589875873


No 15 
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.85  E-value=2e-20  Score=170.91  Aligned_cols=263  Identities=17%  Similarity=0.239  Sum_probs=203.1

Q ss_pred             CCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHH
Q ss_conf             21122022117310001122216753010564889999999999986223203202123562027889865514224767
Q gi|254780680|r  139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADD  218 (430)
Q Consensus       139 k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~  218 (430)
                      +||+.||+.++|++|...    |+|+|.+.-.|.++-+.|.+++-+. ..+.||.+|.+|.|.+.++.+.+|++..|.++
T Consensus         1 ~~h~~lg~~~~l~~~~~~----~~G~~~~lP~G~~l~~~Ie~~~r~~-~~~~G~~EI~tPil~~~eL~~~SG~~d~~~~e   75 (401)
T 1evl_A            1 RDHRKIGKQLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSK-LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA   75 (401)
T ss_dssp             CCHHHHHHHTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHTHHHHSGGG
T ss_pred             CCHHHHHHHCCCCCCCCC----CCEEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCCC
T ss_conf             977787765658445787----8733688738999999999999999-99859979989851887898772770214632


Q ss_pred             HHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCH
Q ss_conf             76431---000231345411454453420595550420885322107884335543432122221020021212786501
Q gi|254780680|r  219 MFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDS  295 (430)
Q Consensus       219 ~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S  295 (430)
                      ||...   .+.+|-||.|.+.+.++++......+||+++.-+++|||.|.-.   ...|+.|..+|..-+..+++.++++
T Consensus        76 mf~~~~~~~~~~l~p~~e~~~~~~~~~~~~s~~~lP~~~yqig~~fR~E~~~---~~~~~~r~Ref~~~~~~~~~~~~~~  152 (401)
T 1evl_A           76 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG---SLHGLMRVRGFTQDDAHIFCTEEQI  152 (401)
T ss_dssp             CCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGG---GCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCEEEECCCHH
T ss_conf             0664045510014777771386898631300245682330360169356555---6577652366787033477346113


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC---------------------------------HHHEEEEEEEECC
Q ss_conf             4578989999999999841067530378011784---------------------------------4340241011010
Q gi|254780680|r  296 FTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF---------------------------------SACKTYDLEVWLA  342 (430)
Q Consensus       296 ~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~---------------------------------~a~~~~DiE~w~P  342 (430)
                      .....+.+.....++..|++++-.+.+.++..+.                                 ....++|+....+
T Consensus       153 ~~~~~e~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  232 (401)
T 1evl_A          153 RDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC  232 (401)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECC
T ss_conf             99999999999999997698369999725876667888999998899999998659970102463223677556786047


Q ss_pred             CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHH-HHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf             0483323753102100764532684733899841010420043228-99999999883468998386582223101
Q gi|254780680|r  343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVA-VGRCLIAILENYLNADGSVTIPTVLRPYM  417 (430)
Q Consensus       343 ~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A-~~R~l~ailEn~q~~dg~i~iP~~L~pym  417 (430)
                      .. +..+.+ .......-+.|.+.+|-+..+.. ..+-.+..+++. +.|+++++.++|.     .+.|..+-|+-
T Consensus       233 ~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~a~l~~~~g-----~~~p~~iap~~  300 (401)
T 1evl_A          233 LD-RAWQCG-TVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGILTEEFA-----GFFPTWLAPVQ  300 (401)
T ss_dssp             TC-CEEEEE-EEEEESSHHHHTTCCEECTTSCE-ECCEEEEEEEEEEHHHHHHHHHHHHT-----TCCCTTTCSSC
T ss_pred             CC-CEEEEE-EEEEECCCCCCCCCEEECCCCCC-EEEEEEEECEECHHHHHHHHHHHHCC-----CCCCCCCCCCE
T ss_conf             78-625764-69883355642330477576660-35289995707378899999999659-----96576533100


No 16 
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.81  E-value=4e-19  Score=161.22  Aligned_cols=256  Identities=19%  Similarity=0.241  Sum_probs=212.1

Q ss_pred             HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCC
Q ss_conf             21675301056488999999999998622320320212356202788986551422476776431----00023134541
Q gi|254780680|r  159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEV  234 (430)
Q Consensus       159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv  234 (430)
                      -+++|+|.+--.|+++-+.+.+++-+. ..+.||.+|.+|.|...++...+|++..|.++||...    .++.|-||.|-
T Consensus        54 ~~~~G~y~~lPlG~~v~~kIe~~ir~~-~~~~G~~EI~tP~l~~~eLw~~Sg~~d~~~~em~~~~dr~~r~~~l~p~~~~  132 (458)
T 2i4l_A           54 QEAAGIYAWLPLGHRVLKKIEQIVREE-QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEE  132 (458)
T ss_dssp             EEETTEEEECHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHH
T ss_pred             CCCCCCEEECHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             068865078810899999999999999-9986998998887387689876177100462112110124200002667870


Q ss_pred             HHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf             14544534205955504208853221078843355434321222210200212127865-01457898999999999984
Q gi|254780680|r  235 SLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE-DSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       235 pL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe-~S~~~~e~~~~~~~~i~~~L  313 (430)
                      +.+.++..++..+.+||+++.-+++|||.|....    .|+.|++||..-+..+|+.++ +....++.|......++..+
T Consensus       133 ~~~~~~~~~~~sy~~lP~~lyqi~~~fR~E~~~~----~gl~r~ref~~~d~~sf~~~~~~~~~~~~~~~~~y~~i~~~~  208 (458)
T 2i4l_A          133 MITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPR----FGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM  208 (458)
T ss_dssp             HHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCB----TGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCCCCCEECCCEEECCCCCCC----CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5658987633443226854000545764546775----344378997874155555228889999999999999999974


Q ss_pred             CCHHHHCCCCCHHCCCHHHEEEEEEE--------------E--CC-----------------------------------
Q ss_conf             10675303780117844340241011--------------0--10-----------------------------------
Q gi|254780680|r  314 DLHYRVVSLCTGDLGFSACKTYDLEV--------------W--LA-----------------------------------  342 (430)
Q Consensus       314 ~lpyRvv~~~sgdlg~~a~~~~DiE~--------------w--~P-----------------------------------  342 (430)
                      +|+++.|...+|.+|...+..|...+              +  .|                                   
T Consensus       209 ~l~~~~v~~~~~~~g~~~s~Ef~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (458)
T 2i4l_A          209 GLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYES  288 (458)
T ss_dssp             TCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCHHHCCC
T ss_conf             98426787336777765349999876443556666544435678873444344443114445553032233122000241


Q ss_pred             -------CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC
Q ss_conf             -------0483323753102100764532684733899841010420043228999999998834689983865822231
Q gi|254780680|r  343 -------GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRP  415 (430)
Q Consensus       343 -------~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~p  415 (430)
                             ...+-.|+...-.+++.-|..++.+|.+..|+. +.+|.- +.++-+.|+++|++|.+-.+.| +..|..+-|
T Consensus       289 ~~~~~~~~~~rgie~g~~f~lg~~~s~~~~~~~~~~~g~~-~~~~~g-~~giGieRli~~~~e~~~d~~g-l~~p~~lAP  365 (458)
T 2i4l_A          289 EVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTD-APIHGG-SYGVGVSRLLGAIIEACHDDNG-IIWPEAVAP  365 (458)
T ss_dssp             HSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCE-EECEEE-EEEEEHHHHHHHHHHHSEETTE-ECCCTTTCS
T ss_pred             CCCHHHHCCCEEEEECCCEECCCCCHHHCCCEEECCCCCE-EEEEEE-ECCCCHHHHHHHHHHHHCCCCC-CCCCCCCCC
T ss_conf             3661330574279972714327411121485465578977-768999-6267347888877775157665-212455677


Q ss_pred             CCCCEEEEC
Q ss_conf             018801307
Q gi|254780680|r  416 YMNNLAVIK  424 (430)
Q Consensus       416 ym~g~~~i~  424 (430)
                      |=  ..+|+
T Consensus       366 ~~--v~Iip  372 (458)
T 2i4l_A          366 FR--VTILN  372 (458)
T ss_dssp             CS--EEEEE
T ss_pred             CE--EEEEE
T ss_conf             65--99996


No 17 
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.78  E-value=7.1e-19  Score=159.38  Aligned_cols=269  Identities=16%  Similarity=0.168  Sum_probs=175.9

Q ss_pred             CCCCCCHHHHCCCCCH------HHH---HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH
Q ss_conf             6211220221173100------011---2221675301056488999999999998622320320212356202788986
Q gi|254780680|r  138 SREHFEIGEALGLMDF------DRA---TKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG  208 (430)
Q Consensus       138 ~k~H~elge~l~liDf------e~a---~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g  208 (430)
                      -|+|+++++.|++...      ..+   +..+|+|.|++.-.|+++-+.|.+|+-+.+ .+.||.+|.+|.|.+.+....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~wlP~G~~v~~~ie~~ire~~-~~~G~~EV~tP~l~~~eLw~~   84 (471)
T 3a32_A            6 DKTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFH-ARRGYYVVETPIIASTELFKV   84 (471)
T ss_dssp             -CCHHHHHHHTTSBCCTTSBCTTTCSBTHHHHCTTCCCBCTTHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCEECCHHHHHH
T ss_conf             6689999997775347521112023446746448621371787999999999999999-986997998980677779877


Q ss_pred             HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHC---CCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             551422476776431---000231345411454453420---59555042088532210788433554343212222102
Q gi|254780680|r  209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEI---IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFW  282 (430)
Q Consensus       209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~---l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~  282 (430)
                      +|++..|.++||..+   .+++|-||.+-+.+-+|.+.+   .++.+||+++.-+++|||-|...   -.-||+|+.+|.
T Consensus        85 SGh~d~~~e~Mf~~d~~~~e~~LrP~~~~~~~~~~~~~~~~~~Syk~LPlrlyqi~~~fR~E~~~---~r~gl~R~ReF~  161 (471)
T 3a32_A           85 SGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG---SIYGLLRVRGFT  161 (471)
T ss_dssp             TCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG---GCBTTTBCSEEE
T ss_pred             HCCHHHHCCCCEEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECEEEECCCC---CCCCEEEEEEEE
T ss_conf             27753421266038508947975466870153675412413365335854687640458602256---742178876578


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHH---HCCHHHHCCCCCH----------HCC---------------------
Q ss_conf             002121278650145789899999999998---4106753037801----------178---------------------
Q gi|254780680|r  283 KCELVSITREEDSFTEHERMLSCAEEILKR---LDLHYRVVSLCTG----------DLG---------------------  328 (430)
Q Consensus       283 KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~---L~lpyRvv~~~sg----------dlg---------------------  328 (430)
                      .-+..+||.+++..++...........+..   +++....+.....          -+|                     
T Consensus       162 ~~da~sF~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~  241 (471)
T 3a32_A          162 QDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINE  241 (471)
T ss_dssp             EEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             70657863717899999999999999999998607764201210013655555410058647678899999999986164


Q ss_pred             -----------CHHHEEEEEEEECCC----CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEEC-CCHHHHHHH
Q ss_conf             -----------443402410110100----4833237531021007645326847338998410104200-432289999
Q gi|254780680|r  329 -----------FSACKTYDLEVWLAG----QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLN-GSGVAVGRC  392 (430)
Q Consensus       329 -----------~~a~~~~DiE~w~P~----~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlN-gt~~A~~R~  392 (430)
                                 ..+...-.++.+++.    .++-..++. ....-..+.|.++.|-+..+.+...++.+. |+.-.+.|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~k~d~~~~~~~~~~gr~~~~~t-~~~~~~~~~~f~l~y~~~~~~~~~~p~~~~~~~~g~~~R~  320 (471)
T 3a32_A          242 KYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGT-IQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERF  320 (471)
T ss_dssp             HHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEE-EEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHH
T ss_pred             CCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCEEECCE-EEEEECCHHHCCCEEEECCCCCEECEEEEEECCCCCHHHH
T ss_conf             545314752673224466511231013432242340434-5675013321687147506894634088851456626777


Q ss_pred             HHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf             999988346899838658222310
Q gi|254780680|r  393 LIAILENYLNADGSVTIPTVLRPY  416 (430)
Q Consensus       393 l~ailEn~q~~dg~i~iP~~L~py  416 (430)
                      ++|++|+|.     ...|..|-||
T Consensus       321 ia~liE~~g-----~~lP~~LAP~  339 (471)
T 3a32_A          321 LGVYLEHRR-----GRMPFTLAPI  339 (471)
T ss_dssp             HHHHHHHTT-----TCCCGGGCSC
T ss_pred             HHHHHHHCC-----CCCCCCCCCC
T ss_conf             767898708-----9888643773


No 18 
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.74  E-value=3.5e-17  Score=146.85  Aligned_cols=182  Identities=21%  Similarity=0.243  Sum_probs=155.6

Q ss_pred             CCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHH
Q ss_conf             21122022117310001122216753010564889999999999986223203202123562027889865514224767
Q gi|254780680|r  139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADD  218 (430)
Q Consensus       139 k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~  218 (430)
                      ++|- |..+.|.+-      -++||||.+--.|++|-+.|+++.-+. ..+.||.+|..|.|...+++.++||+.+|.|.
T Consensus        21 ~~~~-l~~r~g~i~------~~~aGlydygP~G~~lk~~I~~~wr~~-~~~~g~~EV~~P~i~p~~V~kaSGHvd~F~D~   92 (572)
T 2j3l_A           21 LSHQ-ILLRAGYIR------QVAAGIYSYLPLANRVLEKLKTIMREE-FEKIDAVEMLMPALLPAELWKESGRYETYGPN   92 (572)
T ss_dssp             HHHH-HHHHTTSEE------EEETTEEEECHHHHHHHHHHHHHHHHH-HHTTTCEECBCCSEEETHHHHHHSHHHHSCTT
T ss_pred             HHHH-HHHHCCCCC------CCCCCCCEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf             3279-998758875------368816272362999999999999999-99869989989750888999860985536667


Q ss_pred             HHHHHH----CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             764310----0023134541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r  219 MFCTTD----GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED  294 (430)
Q Consensus       219 ~y~~~d----~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~  294 (430)
                      ||...|    +++|-||.|...+.++.+++..+.+||+++..+++.||.|.++    ..|+.|+.+|...+++.|+.+.+
T Consensus        93 M~~~~d~~~~~~~l~p~~e~~~~~~~~~~~~s~~~lp~~~~~~~~~~r~e~~~----~~g~~r~~ef~~~~~~~~~~~~~  168 (572)
T 2j3l_A           93 LYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRS----RSGLLRGREFIMKDGYSFHADEA  168 (572)
T ss_dssp             SCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC----CTGGGSCSEEEEEEEEEEESSHH
T ss_pred             EEEEEECCCCEEEECCCCCHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCCC----CCCCCCCCHHEECCCCCCCCCCC
T ss_conf             07878469876876788725778998751113654608887425523555577----66655421100011441035621


Q ss_pred             -HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHH
Q ss_conf             -14578989999999999841067530378011784434
Q gi|254780680|r  295 -SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSAC  332 (430)
Q Consensus       295 -S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~  332 (430)
                       ..+..+.+......+|..++++|..+....+.+|...+
T Consensus       169 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  207 (572)
T 2j3l_A          169 SLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDS  207 (572)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf             157888889999999987417521011210354566755


No 19 
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.61  E-value=3.2e-15  Score=132.20  Aligned_cols=207  Identities=15%  Similarity=0.219  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH--HCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEE
Q ss_conf             999999862232032021235620278898655--142247677643100023134541145445342059555042088
Q gi|254780680|r  178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT  255 (430)
Q Consensus       178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG--~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~  255 (430)
                      |.++..++. .++||.+|.+|.++..+.+...|  +...+.+++|..+++++|-|+...+++.+++. .....++|+|++
T Consensus        76 l~~~ir~~~-~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~-~~~~~~~p~r~~  153 (288)
T 3dsq_A           76 LEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRE-LERLWDKPIRIF  153 (288)
T ss_dssp             HHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHH-HTTTSCSCEEEE
T ss_pred             HHHHHHHHH-HHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHH-HHHCCCCCEEEE
T ss_conf             999999999-988798998752652215534576544330220476374201343577178899998-630147984899


Q ss_pred             EEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEE
Q ss_conf             5322107884335543432122221020021212786501457898999999999984106-753037801178443402
Q gi|254780680|r  256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKT  334 (430)
Q Consensus       256 ~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~  334 (430)
                      .+++|||.|...       --|++||+.+|...++.+.  ...+.++...+.++++.||+. |++..-|+...|..    
T Consensus       154 ~ig~vfR~E~~~-------~~h~~eFtQ~e~~~~~~~~--~~~~~~l~~l~~~~l~~~g~~~~~~~~~~~~~~~~~----  220 (288)
T 3dsq_A          154 EIGTCYRKESQG-------AQHLNEFTMLNLTELGTPL--EERHQRLEDMARWVLEAAGIREFELVTESSVVYGDT----  220 (288)
T ss_dssp             EEEEEECSCCSS-------SCCCSEEEEEEEEEETCCG--GGHHHHHHHHHHHHHHHHTCCCCEEEECCCCSSCCC----
T ss_pred             EECEEECCCCCC-------CCCCCCEEECCEEEECCCH--HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEE----
T ss_conf             966255568688-------8867827773158986988--999999999999999985997787997047777307----


Q ss_pred             EEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf             41011010048332375310210076453268473389984101042004322899999999883468998386582223
Q gi|254780680|r  335 YDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLR  414 (430)
Q Consensus       335 ~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~  414 (430)
                            +.....|.|++|+.-.-+.+-+++.+            .....|.|+.+.|+ +.+..+.+  |  |+..+...
T Consensus       221 ------~~~~~~~~El~~~~~~~~~~~~~~~~------------~~~~~~~g~gierl-am~~~g~~--d--ir~~~r~~  277 (288)
T 3dsq_A          221 ------VDVMKGDLELASGAMGPHFLDEKWEI------------FDPWVGLGFGLERL-LMIREGTQ--H--VQSMARSL  277 (288)
T ss_dssp             ------EEEEETTEEEEEEEEESCTTTTTTTC------------CSCEEEEEEEHHHH-HHHHHTCS--C--GGGGSSCS
T ss_pred             ------EECCCCEEEEECCCCCHHHHHHCCCC------------CCCCEEEECCHHHH-HHHHCCCC--C--HHHHHHCC
T ss_conf             ------86189668860687589999865899------------99878873579999-99870998--5--77763124


Q ss_pred             CCCCCEEE
Q ss_conf             10188013
Q gi|254780680|r  415 PYMNNLAV  422 (430)
Q Consensus       415 pym~g~~~  422 (430)
                      .||+|++.
T Consensus       278 ~y~~Gi~l  285 (288)
T 3dsq_A          278 SYLDGVRL  285 (288)
T ss_dssp             SEETTEES
T ss_pred             CCCCCCCC
T ss_conf             50066005


No 20 
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.18  E-value=3.1e-10  Score=95.23  Aligned_cols=265  Identities=15%  Similarity=0.206  Sum_probs=171.6

Q ss_pred             CHHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH
Q ss_conf             2022117310001122216--75301056488999999999998622320320212356202788986551422476776
Q gi|254780680|r  143 EIGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF  220 (430)
Q Consensus       143 elge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y  220 (430)
                      +|.+.-+.+..  +..|=|  ||+|-+---|.++-+-+.+..-...+.+-|..+|..|.|...+++..+|++.+|.|-+.
T Consensus        72 ~~~~rr~f~~~--s~~iygg~aG~YdygPlG~~v~~kI~~iwR~emv~~~g~~Ei~~p~l~P~evwkaSGh~~~f~D~~v  149 (693)
T 2zt5_A           72 DTLKRRFFYDQ--AFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV  149 (693)
T ss_dssp             HHHHHTTSEEE--TTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE
T ss_pred             HHHHHCCCCCC--CCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCHH
T ss_conf             99874446245--5012153665305335489999999999999985405978953132589899973698522443046


Q ss_pred             ---------H----HHHCCEECC---------------------------------------------------------
Q ss_conf             ---------4----310002313---------------------------------------------------------
Q gi|254780680|r  221 ---------C----TTDGRWLIP---------------------------------------------------------  230 (430)
Q Consensus       221 ---------~----~~d~l~Li~---------------------------------------------------------  230 (430)
                               .    .++.+-.++                                                         
T Consensus       150 ~~~~~~~r~RaD~ll~~~~e~~~t~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ir~p~~g~~~g~~R~refmmk  229 (693)
T 2zt5_A          150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK  229 (693)
T ss_dssp             EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE
T ss_pred             HHCCCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             65534533314321167887750205666888888898986342014789999999718989887886554534112554


Q ss_pred             ----------------CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             ----------------4541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r  231 ----------------TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED  294 (430)
Q Consensus       231 ----------------TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~  294 (430)
                                      |+.--..||-+=-.....+||.-.+-.+..||.|.-.    -.||+|+..|+-.|+..|+.|++
T Consensus       230 d~~g~~~~~~~~lrpetaq~~f~ay~ri~~~~g~klpf~~AqiG~~frnEi~p----r~gl~R~rEf~~~e~e~F~~p~~  305 (693)
T 2zt5_A          230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP----RSGLIRVREFTMAEIEHFVDPSE  305 (693)
T ss_dssp             EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC----CSGGGSCSEEEEEEEEEEECTTC
T ss_pred             ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CEEEECCCCCEEEEEEECCCHHH
T ss_conf             13466641243135468999999999999970888865998536665776666----53342258765888862357214


Q ss_pred             HHH------------------------------------------HHHHHHHHHHHHHHHHCCH---HHHCCCCCHHCCC
Q ss_conf             145------------------------------------------7898999999999984106---7530378011784
Q gi|254780680|r  295 SFT------------------------------------------EHERMLSCAEEILKRLDLH---YRVVSLCTGDLGF  329 (430)
Q Consensus       295 S~~------------------------------------------~~e~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~  329 (430)
                      ...                                          ++...+.....++..++++   .|.......++-.
T Consensus       306 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ti~eav~~g~i~~~~~~~~~~~~~~~l~~~g~~~~~lr~~~~~~~e~a~  385 (693)
T 2zt5_A          306 KDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAH  385 (693)
T ss_dssp             CCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCT
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHH
T ss_conf             55576765554322435602342478734107999987267248999999999889999707777784431155165555


Q ss_pred             HHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC---------------------------------------------
Q ss_conf             43402410110100483323753102100764532---------------------------------------------
Q gi|254780680|r  330 SACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM---------------------------------------------  364 (430)
Q Consensus       330 ~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl---------------------------------------------  364 (430)
                      .+..+.|+|.-.|  -.|.|+.-+.+-+||--...                                             
T Consensus       386 ya~~~~d~e~~~~--~g~~El~Gia~r~~~dL~~~~~~s~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~f~~d~~~v~~  463 (693)
T 2zt5_A          386 YACDCWDAESKTS--YGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVME  463 (693)
T ss_dssp             TCSSEEEEEEEET--TEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC--------------------------------
T ss_pred             HHHHHHHHHCCCC--CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             5543333112567--77210004223346662344321133123211035765015888724744234331445888874


Q ss_pred             -----------------------------------------CCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             -----------------------------------------684733899841010420043228999999998834689
Q gi|254780680|r  365 -----------------------------------------NSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNA  403 (430)
Q Consensus       365 -----------------------------------------~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~  403 (430)
                                                               +..+.+.+++ ...+|+. -.+.-|+|+++||+|++-.+
T Consensus       464 ~~~~~d~~~~~~~~~~l~~~~~~~l~~~G~~f~l~~~~~~~~~~~~~~~g~-~~~P~Mg-cyGIGVsRilaAiiEq~~de  541 (693)
T 2zt5_A          464 YLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVE-EVVPNVI-EPSFGLGRIMYTVFEHTFHV  541 (693)
T ss_dssp             ------------------------------------------------CCE-EECCEEE-EEEEEHHHHHHHHHHHHEEE
T ss_pred             CCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEEECHHHHHHHHHHCCCCCC-EECCEEE-EECCCHHHHHHHHHHHHHHH
T ss_conf             024677521012200113586588732573788544777765540035674-6454689-81367027999999986330


Q ss_pred             CCC------EECCCCCCCCC
Q ss_conf             983------86582223101
Q gi|254780680|r  404 DGS------VTIPTVLRPYM  417 (430)
Q Consensus       404 dg~------i~iP~~L~pym  417 (430)
                      +|-      .+.|..+=||=
T Consensus       542 ~gi~e~R~vL~wP~~IAP~k  561 (693)
T 2zt5_A          542 REGDEQRTFFSFPAVVAPFK  561 (693)
T ss_dssp             CSSTTCCEEECCCTTTSSCS
T ss_pred             CCCCCCEEEEECCCCCCCCE
T ss_conf             27874013764798758957


No 21 
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.09  E-value=8.2e-10  Score=92.06  Aligned_cols=256  Identities=12%  Similarity=0.037  Sum_probs=158.6

Q ss_pred             CCCHHHHCCCCCHHHHHHHCC--CCCE----EECCHHHHHHHHHHHHHHHHHHHHCC-CCEEHHHHHCCHHHHHHHHHCH
Q ss_conf             122022117310001122216--7530----10564889999999999986223203-2021235620278898655142
Q gi|254780680|r  141 HFEIGEALGLMDFDRATKLSG--ARFS----VLTGHLAHLERALGQFMIDLHTSEHG-YTEVSAPLLVRDEAMYGTGQIP  213 (430)
Q Consensus       141 H~elge~l~liDfe~a~kvsG--srF~----~Lkg~~A~Le~ALi~y~ld~~~~~~G-y~~v~~P~lv~~~~~~gtG~lp  213 (430)
                      =++|++.-+.+.  -++.|-|  ++||    =|=--|+.|-+.|.+......+..+. ...+-.              +-
T Consensus        69 ~~~l~krrgf~~--~s~eiygg~~~~~~~~~dyGPlG~~lk~Ni~~~W~~~~v~~~~~~~~~d~--------------~~  132 (459)
T 3ikl_A           69 LLEICQRRHFLS--GSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDA--------------LH  132 (459)
T ss_dssp             HHHHHHHTTSBC--SCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCC--------------CS
T ss_pred             HHHHHHHCCCCC--CCCHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC--------------CC
T ss_conf             999997348852--58132057100266788868322999999999999997430587775045--------------55


Q ss_pred             HHHHHHHH--HHHCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             24767764--310002313-454114544534205955504208853221078843355434321222210200212127
Q gi|254780680|r  214 KFADDMFC--TTDGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT  290 (430)
Q Consensus       214 ~f~~~~y~--~~d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~  290 (430)
                      .|.+-+--  ....-||=| ||---+.++-.-......+||+.++-++.|||-|.-. ..--.||+|+.+|+.-|+..||
T Consensus       133 ~~~~p~~~~~~~~~~yLRPetaqGif~nFkn~~~~~rkkLPfgiaQIGk~FRnEise-i~PR~GL~RvREFtQ~D~e~F~  211 (459)
T 3ikl_A          133 HKPGPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFT  211 (459)
T ss_dssp             BCCSCCCSSCSCCTTB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-CCCCCCCEECCCEEEEEEEEEE
T ss_conf             679998777665424566223451588799999853778986677850111465465-5677773033434720589996


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC----
Q ss_conf             8650145789899999999998410675303780117844340241011010048332375310210076453268----
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS----  366 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i----  366 (430)
                      +|+++.++++.++.....+|..+|++.-.+.....+ ..-+....|++.-+|  -.|.|+..+.+.+||.-.....    
T Consensus       212 ~P~~~~e~~~~~~~~~~~~~~~lGi~~~~lr~~~h~-~~~a~~~~d~e~~~~--~g~~E~~gia~r~d~dL~~h~~~s~~  288 (459)
T 3ikl_A          212 PPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQ-DEEGRKGNKLYYNFP--WGKELIETLWNLGDHELLHMYPGNVS  288 (459)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEEC-CSSSSCEEEEEEECS--SCEEEEEEEEEEETHHHHHHSCSCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCC-CCCCCCHHHHCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             872468999999999999999968982444653455-211231112136657--78987524222001552000245543


Q ss_pred             EEECCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCCC
Q ss_conf             47338998410104200432289999999988-3468998-----------386582223101
Q gi|254780680|r  367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPYM  417 (430)
Q Consensus       367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~pym  417 (430)
                      .+...+.+....+|.+-. ..-+.|.+.|+++ .|+.+++           .++.|..|-||=
T Consensus       289 ~~~~~d~~~~~~p~vie~-s~gldr~l~a~l~~~y~~~~~~~~~~~~~~R~vL~lp~~lAP~k  350 (459)
T 3ikl_A          289 KLHGRDGRKNVVPCVLSV-NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK  350 (459)
T ss_dssp             SSCCBSSSCBCCCEEEEE-EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC
T ss_pred             CCCCCCCCCCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHCCCE
T ss_conf             333311134433216874-32110678788865324221443466776514443472116760


No 22 
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A*
Probab=99.06  E-value=3.2e-09  Score=87.69  Aligned_cols=208  Identities=19%  Similarity=0.237  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH--HHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCH
Q ss_conf             488999999999998622320320212356202788986551422--476776431000231345411454453420595
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK--FADDMFCTTDGRWLIPTSEVSLTNLYSHEIIES  247 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~--f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~  247 (430)
                      ..+.+++++-+|+.     .+||.+|.+|.|...+.....|..+.  +...++..+.+++|-|+...++..++....-. 
T Consensus        79 ~~~~i~~~ir~~f~-----~~Gf~EV~TP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~-  152 (291)
T 2zin_A           79 YLGKLEREITRFFV-----DRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRA-  152 (291)
T ss_dssp             HHHHHHHHHHHHHH-----HTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHHH-----HCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCCHHHHHHHHHHH-
T ss_conf             99999999999999-----887999976522331220136888774121213257801126642345145777877652-


Q ss_pred             HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC
Q ss_conf             55042088532210788433554343212222102002121278650145789899999999998410675303780117
Q gi|254780680|r  248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL  327 (430)
Q Consensus       248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl  327 (430)
                      ...|+|++.+++|||.|....       -|..+|+.+|...+-    +...++.+....+++++.|++.|+++.-...-.
T Consensus       153 ~~~p~r~f~ig~vfR~e~~~~-------~h~~eF~q~e~~~~~----~~~~~~dl~~~~~~~l~~lg~~~~~~~~~~~~~  221 (291)
T 2zin_A          153 LPDPIKIFEIGPCYRKESDGK-------EHLEEFTMLNFCQMG----SGCTRENLESIITDFLNHLGIDFKIVGDSCMVY  221 (291)
T ss_dssp             SCSSEEEEEEEEEECCCSCSS-------SCCSEEEEEEEEEES----TTCCHHHHHHHHHHHHHHHTCCCEEECC-----
T ss_pred             CCCCCEEEEECCEEEECCCCC-------CCCCCEEEEEEEEEC----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             133402466410122034567-------888863899999989----999799999999999998599278713665676


Q ss_pred             CCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             84434024101101004833237531021007645326847338998410104200432289999999988346899838
Q gi|254780680|r  328 GFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV  407 (430)
Q Consensus       328 g~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i  407 (430)
                          ....|  +    ...|.|+.++.-.....-+.++|-      + ..+.+     ++.+.|+..+.   +...|  |
T Consensus       222 ----~~~~~--~----~~~~~ei~~~~~~~~~v~~~~gid------~-p~~~~-----g~g~erla~~~---~~~~d--i  274 (291)
T 2zin_A          222 ----GDTLD--V----MHGDLELSSAVVGPIPLDREWGID------K-PWIGA-----GFGLERLLKVK---HDFKN--I  274 (291)
T ss_dssp             ----CEEEE--E----EETTEEEEEEEESCCGGGGGGTCC------S-CEEEE-----EEEHHHHHHHH---TTCSS--G
T ss_pred             ----CCCCC--C----CCCCEEEECCCEECHHHHHHCCCC------C-CEEEE-----CCCHHHHHHHH---CCCCC--H
T ss_conf             ----76602--1----668757403860169999866999------9-81886-----75899999875---29993--4


Q ss_pred             ECCCCCCCCCCCEE
Q ss_conf             65822231018801
Q gi|254780680|r  408 TIPTVLRPYMNNLA  421 (430)
Q Consensus       408 ~iP~~L~pym~g~~  421 (430)
                      +..+---.|.+|++
T Consensus       275 r~~~r~~~y~~Gie  288 (291)
T 2zin_A          275 KRAARSGSYYNGIS  288 (291)
T ss_dssp             GGGSSCSSEETTEE
T ss_pred             HHHHHHHCEECCEE
T ss_conf             55541230006502


No 23 
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.06  E-value=3.6e-10  Score=94.73  Aligned_cols=146  Identities=15%  Similarity=0.191  Sum_probs=119.5

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH--HHCHHHHHHHHHHH----HCCEECCCCCCH
Q ss_conf             753010564889999999999986223203202123562027889865--51422476776431----000231345411
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTT----DGRWLIPTSEVS  235 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt--G~lp~f~~~~y~~~----d~l~Li~TaEvp  235 (430)
                      .||+.+.+.+|++.+.|.+++.+. ...+||.+|.||.+-..+++...  |+.+...++||...    ..+.|=|+...|
T Consensus         6 ~G~~d~lP~~~~~~~~i~~~i~~~-~~~~Gy~~V~tP~ie~~dl~~~~~g~~~~~~~~~mf~~~D~~g~~~~LRpd~t~~   84 (420)
T 1qe0_A            6 RGTQDILPEDSKKWRYIENQLDEL-MTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAA   84 (420)
T ss_dssp             TTCCCBCHHHHHHHHHHHHHHHHH-HHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHCCCEECCCCCEEEECCCCCHH
T ss_conf             978665988999999999999999-9986997999952040877425567521115765043266999888327776849


Q ss_pred             HHHHHHH-HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             4544534-205955504208853221078843355434321222210200212127865014578989999999999841
Q gi|254780680|r  236 LTNLYSH-EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLD  314 (430)
Q Consensus       236 L~~~~~~-~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~  314 (430)
                      ++-++.. ......+||+|++-+++|||.|..       |..|+.||.-...-.||.++.  ..-.|++..+.++++.++
T Consensus        85 ~~r~~~~~~~~s~~~lP~r~~~~g~v~R~e~~-------~~~R~Ref~Q~~~ei~g~~~~--~~d~E~~~~~~~~~~~~~  155 (420)
T 1qe0_A           85 VVRSYIEHKMQGNPNQPIKLYYNGPMFRYERK-------QKGRYRQFNQFGVEAIGAENP--SVDAEVLAMVMHIYQSFG  155 (420)
T ss_dssp             HHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCCH--HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCEEECCCC-------CCCCEEEEEEECCEEECCCCC--CHHHHHHHHHHHHHHHCC
T ss_conf             99999985664067787589988647870466-------788513678712105337777--127999999999998638


Q ss_pred             CHH
Q ss_conf             067
Q gi|254780680|r  315 LHY  317 (430)
Q Consensus       315 lpy  317 (430)
                      +.-
T Consensus       156 ~~~  158 (420)
T 1qe0_A          156 LKH  158 (420)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             778


No 24 
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.92  E-value=4.6e-09  Score=86.50  Aligned_cols=153  Identities=20%  Similarity=0.289  Sum_probs=116.2

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC-------------HHHHHHHHHHH----H
Q ss_conf             753010564889999999999986223203202123562027889865514-------------22476776431----0
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI-------------PKFADDMFCTT----D  224 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l-------------p~f~~~~y~~~----d  224 (430)
                      .||+.+-..++++.+.|.+++.+. ..++||.+|.+|.|-+.+++...|..             |.....+|...    .
T Consensus        16 ~G~~d~lP~~~~~~~~i~~~~r~~-~~~~Gy~eI~tP~le~~dl~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~   94 (465)
T 3net_A           16 SGFPEFLPSEKRLELYLLDTIRRV-YESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSE   94 (465)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------C
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCC
T ss_conf             986203986999999999999999-9987997999651173888706577666243322024550124441665677886


Q ss_pred             CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             00231345411454453420595550420885322107884335543432122221020021212786501457898999
Q gi|254780680|r  225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLS  304 (430)
Q Consensus       225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~  304 (430)
                      .++|-|-.-.|++-++... +....+|+|++.++++||.|....     |  |+.||+-...-.||.++.|...--+++.
T Consensus        95 ~l~Lrpd~t~~~~r~~~~~-~~~~~~p~r~~~~g~~~R~e~~~~-----g--r~Ref~Q~~~ei~g~~~~~~~~dae~i~  166 (465)
T 3net_A           95 ARALKFDQTVPLAAYIARH-LNDLTFPFARYQMDVVFRGERAKD-----G--RFRQFRQCDIDVVGREKLSLLYDAQMPA  166 (465)
T ss_dssp             CEEECSCSHHHHHHHHHHH-GGGSCSSEEEEECCEEECBC-------------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHH-CCCCCCCEEEEEEEEEEEECCCCC-----C--CCCHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf             7995378878999999851-101479879999601888237887-----8--5023220675477157764188899998


Q ss_pred             HHHHHHHHHCCHHHHCCCC
Q ss_conf             9999999841067530378
Q gi|254780680|r  305 CAEEILKRLDLHYRVVSLC  323 (430)
Q Consensus       305 ~~~~i~~~L~lpyRvv~~~  323 (430)
                      .+-++++.+++..-.+.+.
T Consensus       167 ~~~~~~~~~~~~~~~i~i~  185 (465)
T 3net_A          167 IITEIFEAVNIGDFVIRIN  185 (465)
T ss_dssp             HHHHHHHHHTCSCEEEEEE
T ss_pred             HHHHHHHHCCCCCHHHCCC
T ss_conf             6887764112466020025


No 25 
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=98.83  E-value=4e-09  Score=86.93  Aligned_cols=269  Identities=16%  Similarity=0.123  Sum_probs=171.0

Q ss_pred             HHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH
Q ss_conf             022117310001122216--7530105648899999999999862-2320320212356202788986551422476776
Q gi|254780680|r  144 IGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLH-TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF  220 (430)
Q Consensus       144 lge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~-~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y  220 (430)
                      |..+-|.+  -.++++-|  ||+|-+---|.++-+-+.+.--..+ ....|+.+|..|.+...+++..+|++..|.|.|+
T Consensus        11 l~~r~Gfi--~~~~e~~~~~sGiy~~LPlG~rvl~KIe~iiR~em~~~~~~~~ev~~p~i~p~eLWk~SGr~e~~~d~m~   88 (505)
T 1ati_A           11 LCKRRGFI--FQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMV   88 (505)
T ss_dssp             HHHHTTSE--EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEE
T ss_pred             HHHHCCCE--ECCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCCCHHH
T ss_conf             99737875--1461003770379755810899999999999999874459858987344589889975799420371166


Q ss_pred             ---HHH----HCCEECCCCCCHHHH-------------------------------------------------------
Q ss_conf             ---431----000231345411454-------------------------------------------------------
Q gi|254780680|r  221 ---CTT----DGRWLIPTSEVSLTN-------------------------------------------------------  238 (430)
Q Consensus       221 ---~~~----d~l~Li~TaEvpL~~-------------------------------------------------------  238 (430)
                         ...    ++.+|-||.|--++.                                                       
T Consensus        89 ~~~~~~dr~~~~~~l~~t~eE~i~kd~~s~~~~~~~~~~~y~~~~~ay~~i~~~~~~~~i~~~~sg~~~~~~~~~~~~~~  168 (505)
T 1ati_A           89 DNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMM  168 (505)
T ss_dssp             EC--------------------------------------------------------------------CCCCEEEECB
T ss_pred             HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             53424301052010331145555544333343255489999999873999999988607657765776786641000012


Q ss_pred             ----------------------------HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             ----------------------------4534205955504208853221078843355434321222210200212127
Q gi|254780680|r  239 ----------------------------LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT  290 (430)
Q Consensus       239 ----------------------------~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~  290 (430)
                                                  +..........+|..+...+.+||-|..    ...|+.|+.+|...+...++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~r~e~~----~~~~~~r~r~~~~~~~~~~~  244 (505)
T 1ati_A          169 FQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT----PRNFIFRVREFEQMEIEYFV  244 (505)
T ss_dssp             EEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS----CCTGGGSCSEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC----CCCCEEEEEEHHHCCEEEEE
T ss_conf             44443321244312223520011023334543121002576100245321125234----32023554300013124550


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCC-HHHHCC--CCCHHCCCHHHEEEEEEEECCCCCCEEEEEEE--------------
Q ss_conf             8650145789899999999998410-675303--78011784434024101101004833237531--------------
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDL-HYRVVS--LCTGDLGFSACKTYDLEVWLAGQNLYREISSC--------------  353 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~l-pyRvv~--~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~--------------  353 (430)
                      .+++....+.......-..+...++ |+.+..  ....++...+...++.+.=.+  -.+-+...+              
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  322 (505)
T 1ati_A          245 RPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFDLGSHTKD  322 (505)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEET--TEEEEEEEEEECTTHHHHHHCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCEECCCCCCCCCCCCCCC
T ss_conf             5214568999999999999875136652378864124222567887777750798--55220401145686454664324


Q ss_pred             --------CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC-------C-CCCCEECCCCCCCCC
Q ss_conf             --------021007645326847338998410104200432289999999988346-------8-998386582223101
Q gi|254780680|r  354 --------STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYL-------N-ADGSVTIPTVLRPYM  417 (430)
Q Consensus       354 --------Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q-------~-~dg~i~iP~~L~pym  417 (430)
                              -..+.--|..++..|.+.+|++ ..+|+ ...+.-+.|+++|++|.+-       . .+..++.|..+-||=
T Consensus       323 ~~~~~~~~~~lg~kys~~~~~~~~~~~gk~-~~~~m-g~ygigv~r~~~a~ie~~~~~~~~~~~~d~~gi~wP~~IAPfq  400 (505)
T 1ati_A          323 QEALGITARVLRNEHSTQRLAYRDPETGKW-FVPYV-IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK  400 (505)
T ss_dssp             TTTTTCCSCCCCCSCCCSCCCEECSSSCCE-ECCEE-EEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCEE-ECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEE
T ss_conf             650036689836523441224451777989-48768-8988665404999998763033303531001035995718736


Q ss_pred             CCEEEEC
Q ss_conf             8801307
Q gi|254780680|r  418 NNLAVIK  424 (430)
Q Consensus       418 ~g~~~i~  424 (430)
                        ..+|+
T Consensus       401 --V~Iip  405 (505)
T 1ati_A          401 --VAVIP  405 (505)
T ss_dssp             --EEEEE
T ss_pred             --EEEEE
T ss_conf             --99996


No 26 
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.79  E-value=1e-08  Score=83.85  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=114.9

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH--HHCHHHHHHHHHHH----HCCEECCCCCCH
Q ss_conf             753010564889999999999986223203202123562027889865--51422476776431----000231345411
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTT----DGRWLIPTSEVS  235 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt--G~lp~f~~~~y~~~----d~l~Li~TaEvp  235 (430)
                      .||+.+-.+++++-..|.+|+.+. ..++||.+|.||.|-+.+++...  |+...+.++||...    +.+.|-|...+|
T Consensus         7 kG~~d~lP~g~~i~~~l~~~i~~~-~~~~Gy~~V~TP~ie~~dl~~~~~~~~~d~~~~~my~~~D~~g~~l~Lrpd~t~~   85 (421)
T 1h4v_B            7 RGTKDLFGKELRMHQRIVATARKV-LEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAA   85 (421)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHCCCCCCCCHHHHHCEEEECCCCCEEEECCCCCHH
T ss_conf             987235988999999999999999-9985997988962150988633468632103664502466999888525767489


Q ss_pred             HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             45445342059555042088532210788433554343212222102002121278650145789899999999998410
Q gi|254780680|r  236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL  315 (430)
Q Consensus       236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l  315 (430)
                      ++-++...-.....+|+|++..++|||.|...     +|.+|.+...-+|.|...    +.....+++..+.+++..+++
T Consensus        86 ~~r~~~~~~~~~~~~p~k~y~~~~v~R~e~~~-----~g~~r~~~q~~~~i~~~~----~~~~~~e~~~~~~~~~~~~~~  156 (421)
T 1h4v_B           86 MVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-----KGRYRQFHQVNYEALGSE----NPILDAEAVVLLYECLKELGL  156 (421)
T ss_dssp             HHHHHHHTTGGGSSSSEEEEEEEEEECCCCC---------CCEEEEEEEEEESCC----CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCEEECCCCC-----CCCEEEEEECCCEECCCC----CHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999985654047872699875535316788-----884145665062112454----326778999999999886076


Q ss_pred             H
Q ss_conf             6
Q gi|254780680|r  316 H  316 (430)
Q Consensus       316 p  316 (430)
                      .
T Consensus       157 ~  157 (421)
T 1h4v_B          157 R  157 (421)
T ss_dssp             C
T ss_pred             C
T ss_conf             6


No 27 
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.69  E-value=1.3e-07  Score=75.64  Aligned_cols=149  Identities=13%  Similarity=0.167  Sum_probs=117.5

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH--HCHHHHHHHHHHH----HCCEECCCCCCH
Q ss_conf             7530105648899999999999862232032021235620278898655--1422476776431----000231345411
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTT----DGRWLIPTSEVS  235 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG--~lp~f~~~~y~~~----d~l~Li~TaEvp  235 (430)
                      .||+.+-..++++-+.|++++.+. ..++||++|.||.|-..+++...|  ..+...++||...    +.+.|-|-..+|
T Consensus         8 ~G~~d~lP~g~~~~~~l~~~ir~~-~~~~Gy~eI~tP~le~~dl~~~s~g~~~d~~~~~m~~~~d~~g~~l~Lrpd~t~~   86 (423)
T 1htt_A            8 RGMNDYLPGETAIWQRIEGTLKNV-LGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAG   86 (423)
T ss_dssp             TTCCCBCHHHHHHHHHHHHHHHHH-HHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCHHHCCCEECCCCCEECCCCCCCHH
T ss_conf             998755988999999999999999-9986997999852041999843368510000032032044899876048888578


Q ss_pred             HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             45445342059555042088532210788433554343212222102002121278650145789899999999998410
Q gi|254780680|r  236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL  315 (430)
Q Consensus       236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l  315 (430)
                      ++-+++..- ....+|+|++-++++||.|...     +|.+|.+...=+|++....++    .-.+++..+.+++..+++
T Consensus        87 i~r~~~~~~-~~~~~p~r~~y~g~v~R~~~~~-----~g~~re~~q~~~e~~g~~~~~----~d~e~i~~~~~~l~~~~~  156 (423)
T 1htt_A           87 CVRAGIEHG-LLYNQEQRLWYIGPMFRHERPQ-----KGRYRQFHQLGCEVFGLQGPD----IDAELIMLTARWWRALGI  156 (423)
T ss_dssp             HHHHHHHHT-CSTTCCEEEEEEEEEECCCCCC-----SSCCSEEEEEEEEEESCCSHH----HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHH-HHCCCCEEEEEECCEEEECCCC-----CCCEEEEEEECCHHCCCCHHH----HHHHHHHHHHHHHHHHCC
T ss_conf             799998644-2237985899854178832688-----886257766042120540678----889999999999987234


Q ss_pred             HHHHCC
Q ss_conf             675303
Q gi|254780680|r  316 HYRVVS  321 (430)
Q Consensus       316 pyRvv~  321 (430)
                      ....+.
T Consensus       157 ~~~~~~  162 (423)
T 1htt_A          157 SEHVTL  162 (423)
T ss_dssp             GGGCEE
T ss_pred             CCCEEE
T ss_conf             431266


No 28 
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=98.68  E-value=1.1e-07  Score=76.32  Aligned_cols=187  Identities=12%  Similarity=0.043  Sum_probs=128.4

Q ss_pred             HCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             0002313-45411454453420595550420885322107884-335543432122221020021212786501457898
Q gi|254780680|r  224 DGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHER  301 (430)
Q Consensus       224 d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~  301 (430)
                      ..-||=| ||.--++++..-......+||++++-++.+||-|. |.  .--.||+|+.+|+.-|+-.||+|+++.+++..
T Consensus       135 ~~~yLRPETaQgifvnF~n~~~~s~kkLPfgiaQIGk~FR~E~nEi--~PR~GL~R~REF~q~D~e~F~~pe~~~~~~~~  212 (454)
T 1g5h_A          135 TSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSN--QTPSSVTRVGEKTEASLVWFTPTRTSSQWLDF  212 (454)
T ss_dssp             HSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEEEECHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCC--CCCCCCCHHHHEEHHCEEEEECCCHHHHHHHH
T ss_conf             4542373010579999999998426788855555302224776776--68767760213311027668774255899999


Q ss_pred             HHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE----ECCCCCCCC
Q ss_conf             9999999999841067530378011784434024101101004833237531021007645326847----338998410
Q gi|254780680|r  302 MLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY----RDPNSKSLK  377 (430)
Q Consensus       302 ~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry----~~~~~~~~~  377 (430)
                      ++.....+|..||++.-.+.....+ ..-+....|++.=+|  -.|.|+..+.+.+||.-..-....    .+..+.. .
T Consensus       213 ~~~~~~~~~~~lGi~~~~~r~~~~~-~~~~~~~~d~~~~~~--~g~~E~~g~~~r~~~dl~~~~~~~~~~~~~~~~~~-~  288 (454)
T 1g5h_A          213 WLRHRLLWWRKFAMSPSNFSSADCQ-DELGRKGSKLYYSFP--WGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRK-N  288 (454)
T ss_dssp             HHHHHHHHHHTTCSSGGGEEEEEEE-CTTSCEEEEEEEEET--TEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTE-E
T ss_pred             HHHHHHHHHHHHCCCHHHHEECCCC-CCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC-C
T ss_conf             9999999999848885572121342-001432366766546--55898888756865100000002221111332113-3


Q ss_pred             EEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCC
Q ss_conf             104200432289999999988-3468998-----------38658222310
Q gi|254780680|r  378 FTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPY  416 (430)
Q Consensus       378 ~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~py  416 (430)
                      +......+..-+.|.+.+++. .|..+++           ..++|..|-||
T Consensus       289 ~~p~v~e~s~~~d~~~~~~l~~~y~~~~~~~~~~~~~~R~vlklp~~lAP~  339 (454)
T 1g5h_A          289 VVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPI  339 (454)
T ss_dssp             ECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSC
T ss_pred             CCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf             353473243355520014454202345343335666203565337655873


No 29 
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.20  E-value=3.4e-06  Score=65.13  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=101.0

Q ss_pred             CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHH
Q ss_conf             675301056488999999999998622320320212356202788986551422476776431----0002313454114
Q gi|254780680|r  161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSL  236 (430)
Q Consensus       161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL  236 (430)
                      -.||.-+-++++++.+.+.+++.+. ...+||.+|.||.|-+.+++...+. +...++||...    ..++|=|=.=.|+
T Consensus        32 ~~G~~d~lP~~~~~~~~i~~~i~~~-~~~~Gy~eV~TP~le~~dl~~~~~g-~~~~~~my~f~D~~g~~l~LRPD~T~~i  109 (456)
T 3lc0_A           32 VQGCRDFPPEAMRCRRHLFDVFHAT-AKTFGFEEYDAPVLESEELYIRKAG-EEITEQMFNFITKGGHRVALRPEMTPSL  109 (456)
T ss_dssp             STTCCCCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEGGGGCCCSC-CHHHHTCEEEECSSSCEEEECSCSHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCC-CCCHHHEEEEECCCCCEEEECCCCCHHH
T ss_conf             8998676988999999999999999-9986995988876362877434678-5103310677869998896378684999


Q ss_pred             HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             54453420595550420885322107884335543432122221020--0212127865014578989999999999841
Q gi|254780680|r  237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILKRLD  314 (430)
Q Consensus       237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~  314 (430)
                      +-++...-.+. ..|+|++.++++||.|....|     -+  +||..  +|++....+    ..-.+.+..+.+++..|+
T Consensus       110 aR~~~~~~~~~-~~~~r~~y~g~v~R~~~~~~g-----~~--re~~Q~g~eiig~~~~----~~d~e~i~l~~~~~~~lg  177 (456)
T 3lc0_A          110 ARLLLGKGRSL-LLPAKWYSIPQCWRYEAITRG-----RR--REHYQWNMDIVGVKSV----SAEVELVCAACWAMRSLG  177 (456)
T ss_dssp             HHHHHHSCTTC-CSSEEEEECCEEECCCC----------C--CEEEEEEEEEESCCST----HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCC-CCCEEEEEECCEEEECCCCCC-----CC--HHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCC
T ss_conf             99999621205-777368740647850489888-----71--2645545541577516----678888776777775327


Q ss_pred             CH
Q ss_conf             06
Q gi|254780680|r  315 LH  316 (430)
Q Consensus       315 lp  316 (430)
                      ++
T Consensus       178 ~~  179 (456)
T 3lc0_A          178 LS  179 (456)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             75


No 30 
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.13  E-value=1.4e-05  Score=60.50  Aligned_cols=140  Identities=17%  Similarity=0.254  Sum_probs=96.6

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHH
Q ss_conf             5301056488999999999998622320320212356202788986551422476776431----000231345411454
Q gi|254780680|r  163 RFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTN  238 (430)
Q Consensus       163 rF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~  238 (430)
                      ||..+...++.+.+.|.+++.+. ..++||.+|.||.+-+.+++...+. +....+||...    ..+.|-|-.-.|++-
T Consensus        11 G~~d~lP~g~~~~~~i~~~i~~~-~~~~Gy~eV~tP~ie~~dl~~~~~g-~~~~~~m~~~~d~~g~~l~Lrpd~t~~~~r   88 (434)
T 1wu7_A           11 GFRDFYPEDMDVEKFIFKTAEEA-AEAFGFRRIDFPSLEYLDLYRIKSG-EELLQQTYSFVDKGGREVTLIPEATPSTVR   88 (434)
T ss_dssp             TCCCBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEETHHHHTTSC-TTGGGGSCEEECTTSCEEEECSCSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCC-CHHHHHHEEEECCCCCEECCCCCCCHHHHH
T ss_conf             87635987999999999999999-9985997998873162765065787-502342114445899785137667999999


Q ss_pred             HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             45342059555042088532210788433554343212222102002121278650145789899999999998410
Q gi|254780680|r  239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL  315 (430)
Q Consensus       239 ~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l  315 (430)
                      ++...  ...++|+|++.++++||.|.-..     |-+|...---+|++.....    ....+.+..+.+.+..+++
T Consensus        89 ~~~~~--~~~~~p~k~~~~~~v~r~~~~~~-----~~~r~~~q~g~e~~g~~~~----~~~~~~~~~~~~~~~~~~~  154 (434)
T 1wu7_A           89 MVTSR--KDLQRPLRWYSFPKVWRYEEPQA-----GRYREHYQFNADIFGSDSP----EADAEVIALASSILDRLGL  154 (434)
T ss_dssp             HHTTC--TTCCSSEEEEECCEEECCCCSCS-----SCCSEEEEEEEEEESCCSH----HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHH--HCCCCCEEEECCCCEEEECCCCC-----CCCCEEEECCEEECCCCCH----HHHHHHHHHHHHHHHHCCC
T ss_conf             99764--12678616741387454046667-----7542146632785376521----6679999999999753177


No 31 
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.99  E-value=3.3e-05  Score=57.88  Aligned_cols=140  Identities=16%  Similarity=0.225  Sum_probs=103.3

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHH
Q ss_conf             5301056488999999999998622320320212356202788986551422476776431----000231345411454
Q gi|254780680|r  163 RFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTN  238 (430)
Q Consensus       163 rF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~  238 (430)
                      ||--+.++-+++.+.+.+-..+. ...+||.++.||.+-..+++...|.  ....++|+..    ..+.|-|=-=+|++-
T Consensus        15 G~~D~~p~~~~~~~~i~~~l~~~-~~~~Gy~~I~tP~~E~~~~~~~~~~--~~~~~~~~f~D~~g~~l~LRpD~T~~iaR   91 (400)
T 3od1_A           15 GMRDTLPEWYKTKKNICDQMTEE-INLWGYDMIETPTLEYYETVGVVSA--ILDQQLFKLLDQQGNTLVLRPDMTAPIAR   91 (400)
T ss_dssp             TCCCBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEETTTHHHHSS--SCGGGSCEEECTTSCEEEECSCSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCEEEHHHHCCCCC--CCCCCEEEEECCCCCEEEECCCCHHHHHH
T ss_conf             87577999999999999999999-9986995767685645155344476--34000599997999989878866599999


Q ss_pred             HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             45342059555042088532210788433554343212222-1020021212786501457898999999999984106
Q gi|254780680|r  239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH  316 (430)
Q Consensus       239 ~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp  316 (430)
                      ++....-+ ..+|+|++-.++|||.|.-.     +|-+|.+ |+ =||++..    +|...--|++..+.++++.|++.
T Consensus        92 ~~a~~~~~-~~~p~k~~y~g~vfR~~~~~-----~g~~re~~Q~-g~EiiG~----~s~~ad~EvI~l~~~~l~~lg~~  159 (400)
T 3od1_A           92 LVASSLKD-RAYPLRLAYQSNVYRAQQNE-----GGKPAEFEQL-GVELIGD----GTASADGEVIALMIAALKRAGLS  159 (400)
T ss_dssp             HHHHHCSS-SCSCEEEEEEEEEECCCC--------CCCSEEEEE-EEEEESC----CSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHC-CCCCEEEEEECCEEEECCCC-----CCCCEEEEEC-CEEEEEC----CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99986510-57872799976788845766-----8961265305-5567524----77287899999999999856997


No 32 
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.68  E-value=0.00021  Score=51.89  Aligned_cols=141  Identities=21%  Similarity=0.208  Sum_probs=98.8

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH--HHHHHHHHH----HCCEECCCCCCHHHHH
Q ss_conf             1056488999999999998622320320212356202788986551422--476776431----0002313454114544
Q gi|254780680|r  166 VLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK--FADDMFCTT----DGRWLIPTSEVSLTNL  239 (430)
Q Consensus       166 ~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~--f~~~~y~~~----d~l~Li~TaEvpL~~~  239 (430)
                      -+.+.-|..-+.+.+-..+. ..++||.+|.||.+=..+++...+.-..  ..+++|...    ..++|-|=.-+|++-+
T Consensus        30 d~~~~~~~~~~~i~~~l~~~-f~~~Gy~~I~tP~lE~~d~~~~~~~~~~~~~~~~~~~f~D~~g~~l~LRpD~T~~iaR~  108 (344)
T 1z7m_A           30 EMTLNQVKSLRQIEGRLRKL-FSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRL  108 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHH
T ss_conf             40999999999999999999-99869979778864427765311688654331132788989999898578660999999


Q ss_pred             HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             53420595550420885322107884335543432122221020--0212127865014578989999999999841067
Q gi|254780680|r  240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      ++..   ...+|+|++-.+++||.+.-..     |-+|  ||..  ||+|..    ++...--|++..+-++++.|++.-
T Consensus       109 ~a~~---~~~~~~r~~Y~g~VfR~~~~~~-----gr~r--Ef~Q~G~EiiG~----~~~~aD~Eii~l~~~~l~~lgl~~  174 (344)
T 1z7m_A          109 YSQI---KDSTSARYSYFGKIFRKEKRHK-----GRST--ENYQIGIELFGE----SADKSELEILSLALQVIEQLGLNK  174 (344)
T ss_dssp             HHTC---CSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESS----CHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHH---CCCCCCCEEEECCCEEECCCCC-----CCCE--EEEEEEEEECCC----CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9984---3678802898650138678889-----9840--577710554488----976888999999999998624556


Q ss_pred             HHCC
Q ss_conf             5303
Q gi|254780680|r  318 RVVS  321 (430)
Q Consensus       318 Rvv~  321 (430)
                      -++.
T Consensus       175 ~~i~  178 (344)
T 1z7m_A          175 TVFE  178 (344)
T ss_dssp             EEEE
T ss_pred             CEEE
T ss_conf             3688


No 33 
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.63  E-value=0.00041  Score=49.74  Aligned_cols=192  Identities=19%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHCCEECC-CCCCHHHHHHHHHCCCHHHHCC
Q ss_conf             9999986223203202123562027889865514224-----767764310002313-4541145445342059555042
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDGRWLIP-TSEVSLTNLYSHEIIESKSLPL  252 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~Li~-TaEvpL~~~~~~~~l~~~~LPi  252 (430)
                      ++-..++. ..-||+++.-|.++...--+..-+.|..     ..|.|.+++++.|-+ ||-+..-.|..  .  ..+.|+
T Consensus        59 ~~~I~~if-~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~--~--~~~~p~  133 (294)
T 2rhq_A           59 VEEIEDLF-LGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEK--R--NGQGPV  133 (294)
T ss_dssp             HHHHHHHH-HTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHH--T--TTCSCE
T ss_pred             HHHHHHHH-HHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--H--CCCCCE
T ss_conf             99999999-778971645884104305766348899830204045188503520377680778999985--1--568983


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCH-H
Q ss_conf             088532210788433554343212222102002121278650145789899999999998410675303780117844-3
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFS-A  331 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~-a  331 (430)
                      |+.+.++|||+|+=.+   |.    .++|+.+|-+++-+.-    -+..+....+.+++.+..+-..+..-..--.|+ -
T Consensus       134 ~~~~~G~VyRrD~iDa---tH----~p~FhQ~Eg~~v~~~~----~~~~Lk~~l~~f~~~~f~~~~~~r~rpsyFPfTeP  202 (294)
T 2rhq_A          134 KIICPGKVYRRDSDDA---TH----SHQFTQIEGLVVDKNI----KMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEP  202 (294)
T ss_dssp             EEEEEEEEECCCCCBT---TB----CSEEEEEEEEEEESSC----CHHHHHHHHHHHHHHHHCTTCCEEEEECCBTTEEE
T ss_pred             EEEECCCEEECCCCCH---HH----CCEEEEEEEEEECCCC----CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             8984684772687873---44----2222230159964787----77664437889999870677458974465854588


Q ss_pred             HEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             402410110100--------4833237531021007645326847338998410104200432289999999
Q gi|254780680|r  332 CKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA  395 (430)
Q Consensus       332 ~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a  395 (430)
                      +...|+..+.+.        .+.|.||.-|.-.--=.-+..+|   |++. -+.|+.     |+-+-|+..-
T Consensus       203 s~Evdv~~~~~~g~~~~v~~~~~WlEi~G~Gmv~P~VL~~~Gi---d~~~-~~G~Af-----GlGlERlAMl  265 (294)
T 2rhq_A          203 SVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGF---DSNE-YSGFAF-----GMGPDRIAML  265 (294)
T ss_dssp             EEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTC---CTTT-CEEEEE-----EECHHHHHHH
T ss_pred             CCEEEEEEECCCCCCCEECCCCCCEEEEEECCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHHHH
T ss_conf             6226777620489874140588746886303427899997299---9677-879998-----6338899999


No 34 
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=97.58  E-value=0.00023  Score=51.50  Aligned_cols=181  Identities=10%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH---HHCCEECCCCCCHHHHHHHHHCCCHHHHC
Q ss_conf             999999999862232032021235620278898655142247677643---10002313454114544534205955504
Q gi|254780680|r  175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLP  251 (430)
Q Consensus       175 e~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~---~d~l~Li~TaEvpL~~~~~~~~l~~~~LP  251 (430)
                      +..+..+.+-..+...||.++.+..++.++....-  ++ .....+..   ..+.-+-=|+=.|-.-.......+....|
T Consensus       148 ~~~~~~~k~r~~l~~~G~~EVitySfvs~~~~~~l--~~-~~~~i~l~NPisSe~svLRThlspgll~~l~~N~~r~~~p  224 (665)
T 2odr_A          148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP  224 (665)
T ss_dssp             ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             56766665312221046124542022362443202--56-5552002585531355648887268999999998579998


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC-CCH
Q ss_conf             2088532210788433554343212222102002121278650145789899999999998410675303780117-844
Q gi|254780680|r  252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL-GFS  330 (430)
Q Consensus       252 ik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl-g~~  330 (430)
                      +|+...++|||+|+..   |..   ...+|+-+|-+.+-+    .--+..+....+.+++.|+.+---+..-...- -.-
T Consensus       225 lrlFEiGrVFR~D~~~---D~t---Hl~~fhQleGlvvg~----~vdf~DLKg~le~lL~~lg~~~vkfr~~~s~~Pf~h  294 (665)
T 2odr_A          225 FKLFSIDRCFRREQKE---DKS---HLMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT  294 (665)
T ss_dssp             EEEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBC
T ss_pred             EEEEEEEEEECCCCCC---CCC---CCCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf             5899777887478755---465---586114899999867----567899999999999996788718996577789989


Q ss_pred             HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE
Q ss_conf             34024101101004833237531021007645326847
Q gi|254780680|r  331 ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY  368 (430)
Q Consensus       331 a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry  368 (430)
                      -++.-|+++|-|..+.|.||..|.-.----.+.++|.|
T Consensus       295 Pg~eaeV~~~~~k~~~WlEIgg~G~vhP~VLk~~GId~  332 (665)
T 2odr_A          295 PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDV  332 (665)
T ss_dssp             TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCS
T ss_pred             CCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCC
T ss_conf             94058999994569839999924430799998769798


No 35 
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.50  E-value=0.00048  Score=49.17  Aligned_cols=114  Identities=11%  Similarity=0.174  Sum_probs=73.3

Q ss_pred             HCCCHHHHCCEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHC
Q ss_conf             205955504208853221078843-35543432122221020021212786501457898999999999984106-7530
Q gi|254780680|r  243 EIIESKSLPLRFTTLAPSFRSEAG-SAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVV  320 (430)
Q Consensus       243 ~~l~~~~LPik~~~~s~cfR~EaG-s~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv  320 (430)
                      ...+....|+|+.+.++|||+|+- .+   |    +.++|+.+|.+++-+    .--+..+....+.+++.|+.. .|+-
T Consensus       209 ~l~e~~~~Pir~~s~GrVyRrD~i~D~---t----H~~~FhQ~Eglvvd~----~vt~~dLK~~L~~f~~~~~~~~~k~R  277 (549)
T 2du7_A          209 SLIKKRKLPLKLFSIDRCFRREQREDR---S----HLMSYHSASCVVVGE----DVSVDDGKVVAEGLLAQFGFTKFKFK  277 (549)
T ss_dssp             TTTTTSCSSEEEEEEEEECCCCSSCSS---S----CCSCEEEEEEEEECT----TCCHHHHHHHHHHHHGGGTCCCCCCE
T ss_pred             HHHHCCCCCEEEECCCCCCCCCCCCCH---H----HCCCCEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             998527998056336654445555642---1----178773777689607----87899999999999999779883898


Q ss_pred             CCCCH-HCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE
Q ss_conf             37801-1784434024101101004833237531021007645326847
Q gi|254780680|r  321 SLCTG-DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY  368 (430)
Q Consensus       321 ~~~sg-dlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry  368 (430)
                      -.++- ---.| +-..|+.++.|..+.|.||.-|.-..----+..+|-|
T Consensus       278 ~~~syFPfTeP-s~EveV~~~~~~~g~WlEIlGcGmv~P~VL~~~Gid~  325 (549)
T 2du7_A          278 PDEKKSKYYTP-ETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDV  325 (549)
T ss_dssp             ECTTCCTTBCT-TTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCS
T ss_pred             ECCCCCCCCCC-CEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCC
T ss_conf             78888899999-6578999970889818999578477889998569798


No 36 
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=97.39  E-value=0.00045  Score=49.37  Aligned_cols=178  Identities=12%  Similarity=0.148  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH---H---HHHCCEECCCCCCHHHHHHHHHCCCH
Q ss_conf             99999999998622320320212356202788986551422476776---4---31000231345411454453420595
Q gi|254780680|r  174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF---C---TTDGRWLIPTSEVSLTNLYSHEIIES  247 (430)
Q Consensus       174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y---~---~~d~l~Li~TaEvpL~~~~~~~~l~~  247 (430)
                      ++..+..+-+-..+...||.++....++.++..      .++.+..+   .   +..++-+.=|+=.|-.........+.
T Consensus       147 ~e~~~~~~k~r~~l~~~G~~EvitySfvd~~~~------~~~~~~~~p~~l~NPisse~sVLRThttpGlL~~l~~n~~r  220 (701)
T 2odr_C          147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMG------LKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNK  220 (701)
T ss_dssp             -------------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH------HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             356667665301121034102432023472332------00256556200258553014561768746699999999857


Q ss_pred             HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHC
Q ss_conf             55042088532210788433554343212222102002121278650145789899999999998410675303780117
Q gi|254780680|r  248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDL  327 (430)
Q Consensus       248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl  327 (430)
                      ...|+|+...++|||+|+..   |...+   .+|+.+|-+.+-.    .--+..+....+.+++.|+++---+..-...-
T Consensus       221 ~~~piRlFeiGrVFR~D~i~---DatHl---~~FhQ~EGlvvg~----~Vdf~DLKgiLe~lL~~Lg~~~vkfr~~~s~~  290 (701)
T 2odr_C          221 KPLPFKLFSIDRCFRREQKE---DKSHL---MTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKS  290 (701)
T ss_dssp             SCSCEEEEEEEEEECCCSCC---CSSCC---SEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCC
T ss_pred             CCCCEEEEEEEEEEECCCCC---CCCCC---CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99984999876667257624---25578---4246789999858----86899999999999999678772999657788


Q ss_pred             C-CHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCE
Q ss_conf             8-443402410110100483323753102100764532684
Q gi|254780680|r  328 G-FSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSR  367 (430)
Q Consensus       328 g-~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~ir  367 (430)
                      . .--++..|+.+|.|..+.|.||..|.-.--=.-+.++|.
T Consensus       291 Pf~hPg~eaeV~~~~~~~~~WlEIgg~GmvhP~VL~~~GId  331 (701)
T 2odr_C          291 KYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGID  331 (701)
T ss_dssp             TTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCC
T ss_pred             CCCCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCC
T ss_conf             99899135899999465994899965754079999876979


No 37 
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=97.31  E-value=0.00072  Score=47.90  Aligned_cols=182  Identities=11%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH---HHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             999999999986223203202123562027889865514224767764---31000231345411454453420595550
Q gi|254780680|r  174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC---TTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~---~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
                      ++.-+-.+.+...+...||.++.+-.++..+...--  ++ ....++.   +..++-+.-|+=.|-.--......+....
T Consensus       147 ~~~~~~~~k~r~~l~~~G~~Evitysfv~~~~~~~~--~~-~~~~v~l~NPisSe~~vLRTh~~~gll~~l~~n~~r~~~  223 (648)
T 2odr_B          147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL  223 (648)
T ss_dssp             ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             356666655302222034000321023463443202--56-555211358553235565887746899999999857999


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCC-C
Q ss_conf             420885322107884335543432122221020021212786501457898999999999984106753037801178-4
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLG-F  329 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg-~  329 (430)
                      |+|+...++|||+++..   |..   +..+|+-+|-+.+-.    .--+..+....+.+++.|+++---+..-...-. +
T Consensus       224 pirlFEiGrVFR~D~~~---D~t---H~~~fhQleGlivg~----~vdf~dLKg~le~lL~~Lg~~~~k~r~~~s~~Pf~  293 (648)
T 2odr_B          224 PFKLFSIDRCFRREQKE---DKS---HLMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY  293 (648)
T ss_dssp             CEEEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTB
T ss_pred             CEEEEEEEEEECCCCCC---CCC---CCCCEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             83899877787378744---243---576200478999778----76889999999999999678873899656778998


Q ss_pred             HHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE
Q ss_conf             434024101101004833237531021007645326847
Q gi|254780680|r  330 SACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY  368 (430)
Q Consensus       330 ~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry  368 (430)
                      --++..||++|.|..+.|.||..|.-..-=-.+.++|.|
T Consensus       294 hPg~ea~V~~~~~~~~~WlEIgg~G~vHP~VLk~~GId~  332 (648)
T 2odr_B          294 TPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDV  332 (648)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCS
T ss_pred             CCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCC
T ss_conf             991158999981679848999806531799998669698


No 38 
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=97.20  E-value=0.00083  Score=47.43  Aligned_cols=169  Identities=11%  Similarity=0.088  Sum_probs=98.1

Q ss_pred             HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH---HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCC
Q ss_conf             232032021235620278898655142247677643---10002313454114544534205955504208853221078
Q gi|254780680|r  187 TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRS  263 (430)
Q Consensus       187 ~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~---~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~  263 (430)
                      +...||.++.+-.++.++...--  ++ .....+..   ..++-+.=|+=.|-..-......+....|+|+...++|||+
T Consensus       160 l~~~G~~EvitySFvs~~~~~~l--~~-~~~~i~L~NPisse~svLRThtspgll~~l~~n~~r~~~piRlFEiGrVFR~  236 (685)
T 2odr_D          160 DGDDLVLEISNALEISSEMGLKI--LE-DVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRR  236 (685)
T ss_dssp             ---------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECC
T ss_pred             HHCCCCEEEEEECCCCHHHHHHC--CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEC
T ss_conf             10245102442113473454321--56-6562002585520255758877467999999998479998489964677705


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC-HHHEEEEEEEECC
Q ss_conf             843355434321222210200212127865014578989999999999841067530378011784-4340241011010
Q gi|254780680|r  264 EAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF-SACKTYDLEVWLA  342 (430)
Q Consensus       264 EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~-~a~~~~DiE~w~P  342 (430)
                      |..+   |...   ..+|+.+|-+.+-.    .--+..+-...+.+++.|+++---+..-...-.+ --++.-|+++|-|
T Consensus       237 D~i~---DatH---l~efhQleGlivg~----~Vdf~DLKgiLE~lL~~Lg~~~vkfr~~~s~~Pf~hPg~eaeV~~~~~  306 (685)
T 2odr_D          237 EQKE---DKSH---LMTYHSASCAIAGE----GVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHP  306 (685)
T ss_dssp             CSCC---CSSC---CSEEEEEEEEEECT----TCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEET
T ss_pred             CCCC---CCCC---CCCEEEEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECC
T ss_conf             7754---4545---76314589999967----747999999999999986788739996667788879950279999806


Q ss_pred             CCCCEEEEEEECCCCCHHHHHCCCEE
Q ss_conf             04833237531021007645326847
Q gi|254780680|r  343 GQNLYREISSCSTCGNFQSRRMNSRY  368 (430)
Q Consensus       343 ~~~~y~Ev~S~Snc~D~QsrRl~iry  368 (430)
                      ..+.|.||..|.-.--=..+.++|.|
T Consensus       307 ~~~~WlEIgg~G~vhP~VLk~~GId~  332 (685)
T 2odr_D          307 KLKEWLEVATFGVYSPVALSKYGIDV  332 (685)
T ss_dssp             TTTEEEEEEEEEEBCHHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCCHHHHHHCCCCC
T ss_conf             79838999806650799998769798


No 39 
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.07  E-value=0.0035  Score=42.81  Aligned_cols=171  Identities=15%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHCCCCEEH-HHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC---------------------------
Q ss_conf             999998622320320212-3562027889865514224-----7677643100---------------------------
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVS-APLLVRDEAMYGTGQIPKF-----ADDMFCTTDG---------------------------  225 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~-~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~---------------------------  225 (430)
                      ++..-+... .-||+++. .|.++...=-+-+=+.|.+     ..|.|.+++.                           
T Consensus       231 ~~~ir~if~-~mGF~E~~~~~~Ves~fwNFDaLf~PqdHPaRd~~DTfYl~~~~~~~~~~~d~~~~v~~~h~~g~~~~~g  309 (508)
T 3l4g_A          231 RSQFRQIFL-EMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQG  309 (508)
T ss_dssp             HHHHHHHHH-HTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTBCC
T ss_pred             HHHHHHHHH-HCCCEEECCCCEEEECCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999998-6898873589815620131353348745898873686885686433446289998877664127766545


Q ss_pred             -----------CEECCCCCCHHHHHHHHHCCC-HHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             -----------023134541145445342059-55504208853221078843355434321222210200212127865
Q gi|254780680|r  226 -----------RWLIPTSEVSLTNLYSHEIIE-SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE  293 (430)
Q Consensus       226 -----------l~Li~TaEvpL~~~~~~~~l~-~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe  293 (430)
                                 ..+.-|.--++..-+..+... ...-|+|+++..+|||+|.-.+   |+    .++|+-+|-+++... 
T Consensus       310 ~~~~~~~~~~~~~vLRtHtt~~~~r~l~~~~~~~~~~p~k~f~i~rvfR~e~~D~---tH----~~~fhQ~eg~v~~~~-  381 (508)
T 3l4g_A          310 YKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA---TH----LAEFHQIEGVVADHG-  381 (508)
T ss_dssp             CCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS---SS----CSEEEEEEEEEEEES-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC---CC----CCCCCCCCCEEECCC-
T ss_conf             4444343332233445788721099999886358989804524555234677867---65----776530311462278-


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCC-HHHHCCCCCHHCCCH-HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC
Q ss_conf             0145789899999999998410-675303780117844-340241011010048332375310210076453268
Q gi|254780680|r  294 DSFTEHERMLSCAEEILKRLDL-HYRVVSLCTGDLGFS-ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS  366 (430)
Q Consensus       294 ~S~~~~e~~~~~~~~i~~~L~l-pyRvv~~~sgdlg~~-a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i  366 (430)
                         --+..+....++++..++. .+|..  |+-   || ..=.+-+++|.|+.+.|.||.-|.-.--=--+.+++
T Consensus       382 ---~~~~~L~~~l~~~~~~lg~~~vR~~--paY---fPfTePS~Ev~v~~~g~~~WlEv~g~G~~rpevL~~~Gi  448 (508)
T 3l4g_A          382 ---LTLGHLMGVLREFFTKLGITQLRFK--PAY---NPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGL  448 (508)
T ss_dssp             ---CCHHHHHHHHHHHHHTTTCCCCEEE--ECC---CTTCSSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTC
T ss_pred             ---CCHHHHHHHHHHHHHHCCCCEEEEC--CCC---CCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf             ---5699999999999997399648706--898---999998089999838999748982572577999986698


No 40 
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.05  E-value=0.00071  Score=47.92  Aligned_cols=117  Identities=13%  Similarity=0.217  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             88999999999998622320320212356202788986551422476776431000231345411454453420595550
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
                      ..++--++++++-++ +.++||++|.||.|.....-.+...   |.-.....+.+.||.-..|..+-     ..+- ..+
T Consensus       175 ~~~~Rs~i~~~iR~f-l~~~gFiEVeTP~L~~~~~e~~a~~---F~~~~~~~~~~~yL~qSpql~~q-----~l~~-~g~  244 (521)
T 3bju_A          175 KFIIRSKIITYIRSF-LDELGFLEIETPMMNIIPGGAVAKP---FITYHNELDMNLYMRIAPELYHK-----MLVV-GGI  244 (521)
T ss_dssp             HHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCCSSSCCC---CEEEETTTTEEEEECSCSHHHHH-----HHHH-TTC
T ss_pred             HHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCC---CEEECCCCCCCHHCCCHHHHHHH-----HHHH-CCC
T ss_conf             999999999999986-2359859997774200136665665---00002347831212604799999-----9996-766


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             4208853221078843355434321222210200212127865014578989999999999
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK  311 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~  311 (430)
                       =|+..++||||.|-    .+|+   +.-+|+.+|+..      +...++.++..++++++
T Consensus       245 -~rVfeIg~~FRaE~----~~tr---H~pEFtmlE~e~------af~d~~d~m~~~e~li~  291 (521)
T 3bju_A          245 -DRVYEIGRQFRNEG----IDLT---HNPEFTTCEFYM------AYADYHDLMEITEKMVS  291 (521)
T ss_dssp             -CEEEEEEEEECCSC----CBTT---BCSEEEEEEEEE------ETCCHHHHHHHHHHHHH
T ss_pred             -CCCEEEHHHHCCCC----CCCC---CCCCEECCEEEE------ECCCHHHHHHHHHHHHH
T ss_conf             -30201133413776----5347---787663030056------04667888877999999


No 41 
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.01  E-value=0.00074  Score=47.82  Aligned_cols=138  Identities=15%  Similarity=0.205  Sum_probs=77.8

Q ss_pred             HHHHHHHCCCCCEEEC--CHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH----HHHCC
Q ss_conf             0011222167530105--64889999999999986223203202123562027889865514224767764----31000
Q gi|254780680|r  153 FDRATKLSGARFSVLT--GHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC----TTDGR  226 (430)
Q Consensus       153 fe~a~kvsGsrF~~Lk--g~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~----~~d~l  226 (430)
                      ..+|+-++++-.+=-.  -+.-++--++++.+-++ ..++||++|.||.|+...+ +|++-.| |+-+.+.    -+...
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~L~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~-~ga~~~p-f~~~~~~~~~~~~~~~   91 (345)
T 3a5y_A           15 VPRGSHMSETASWQPSASIPNLLKRAAIMAEIRRF-FADRGVLEVETPCMSQATV-TDIHLVP-FETRFVGPGHSQGMNL   91 (345)
T ss_dssp             ----------CTTSCSSCHHHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCC-CCTTCCC-CEEEECCSTTSCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCC-EEEEECCCCCCCCCCE
T ss_conf             45766787677768726599999999999999999-9888978987986478898-7645661-6887236666678577


Q ss_pred             EECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             23134541145445342059555042088532210788433554343212222102002121278650145789899999
Q gi|254780680|r  227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCA  306 (430)
Q Consensus       227 ~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~  306 (430)
                      ||.-..|..+     ...+. .-+ =|+..++||||.|-    .++   .+.-+|+.+|....      ..-++++.+.+
T Consensus        92 yL~~SpQl~l-----q~l~~-~g~-~rVf~I~p~FR~E~----~~~---~H~~EFtmlE~e~a------~~d~~dlm~~~  151 (345)
T 3a5y_A           92 WLMTSPEYHM-----KRLLV-AGC-GPVFQLCRSFRNEE----MGR---YHNPEFTMLEWYRP------HYDMYRLMNEV  151 (345)
T ss_dssp             EECSCSHHHH-----HHHHH-TTC-CSEEEEEEEECCCC----CBT---TBCSEEEEEEEEEE------TCCHHHHHHHH
T ss_pred             EECCCHHHHH-----HHHHH-CCC-CCCEEEECCCCCCC----CCC---CCCCCEEEEEEEEC------CCCHHHHHHHH
T ss_conf             7554879999-----99996-799-87279834532699----898---85763455344324------79999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999984
Q gi|254780680|r  307 EEILKRL  313 (430)
Q Consensus       307 ~~i~~~L  313 (430)
                      |++++.+
T Consensus       152 E~li~~v  158 (345)
T 3a5y_A          152 DDLLQQV  158 (345)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 42 
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Probab=96.94  E-value=0.0039  Score=42.41  Aligned_cols=195  Identities=17%  Similarity=0.202  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--------------CEECCCCCCHHHHH
Q ss_conf             9999986223203202123562027889865514224-----7677643100--------------02313454114544
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--------------RWLIPTSEVSLTNL  239 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--------------l~Li~TaEvpL~~~  239 (430)
                      ++-..|+. ..-||+.+.-|.+-...--+.+=+.|..     ..|.|+++++              ..|.-|---|+..-
T Consensus       107 ~~eI~dIF-~~mGF~v~~GpeIE~d~~NFdaLn~P~dHPARd~~DTFyl~~~~~~~~~~~~~~~~~~~lLRTHTS~~q~r  185 (350)
T 1b7y_A          107 ERELVEIF-RALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVR  185 (350)
T ss_dssp             HHHHHHHH-HTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHHH
T ss_pred             HHHHHHHH-HHCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHH
T ss_conf             99999999-73694450387535566668876799755103356438970555345787520111031504468688999


Q ss_pred             HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             53420595550420885322107884335543432122221020021212786501457898999999999984106753
Q gi|254780680|r  240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV  319 (430)
Q Consensus       240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRv  319 (430)
                      ++    ....-|+|+.+.++|||+++=.+   |+    .++|+-+|-+++-..    --+..+....+++++.+.-+=..
T Consensus       186 ~m----~~~~pp~r~i~~GrVyR~d~~D~---tH----~p~FhQ~Egl~vd~~----it~~~Lk~~l~~~~~~~f~~~~~  250 (350)
T 1b7y_A          186 YM----VAHTPPFRIVVPGRVFRFEQTDA---TH----EAVFHQLEGLVVGEG----IAMAHLKGAIYELAQALFGPDSK  250 (350)
T ss_dssp             HH----HHCCSSEEEEEEEEEECCCCCCS---SC----CSEEEEEEEEEEETT----CCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HH----HCCCCCEEEEECCCCCCCCCCCC---CC----CCCCEEEEEEECCCC----CCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             98----62499816983676546899887---55----875468899981300----22798899999999974189864


Q ss_pred             CCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE----CCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf             03780117844340241011010048332375310210076453268473----3899841010420043228999999
Q gi|254780680|r  320 VSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR----DPNSKSLKFTHTLNGSGVAVGRCLI  394 (430)
Q Consensus       320 v~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~----~~~~~~~~~~htlNgt~~A~~R~l~  394 (430)
                      +..-.+=-.|+. =.+.+++|.|..++|.||.-|.-.--=.=+..+|...    ++..+    .+|--+=|+-+-|+..
T Consensus       251 ~R~rp~yFPfTe-Ps~Evdi~~~~~~~WiEi~G~Gmv~p~vl~~~g~~~~~~g~~~~~~----~~~g~AfG~GleRlaM  324 (350)
T 1b7y_A          251 VRFQPVYFPFVE-PGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYR----GVTGFAFGLGVERLAM  324 (350)
T ss_dssp             EEEEECCBTTEE-EEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCT----TCEEEEEEEEHHHHHH
T ss_pred             EEECCCCCCCCC-CCCEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCC----CCEEEEEEECHHHHHH
T ss_conf             875788789888-8734999968799568980563777899975589766517885456----6759998643889999


No 43 
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.81  E-value=0.0028  Score=43.48  Aligned_cols=114  Identities=15%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             HHHCCCHHHHCCEEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH---
Q ss_conf             342059555042088532210788-4335543432122221020021212786501457898999999999984106---
Q gi|254780680|r  241 SHEIIESKSLPLRFTTLAPSFRSE-AGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH---  316 (430)
Q Consensus       241 ~~~~l~~~~LPik~~~~s~cfR~E-aGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp---  316 (430)
                      ...+......|+|+++.++|||+| |-.+   |    +.++|+-+|-+++-+    .--+..+....+.+++.|+.+   
T Consensus       195 lr~l~~~~~~Piri~s~GrVyRrD~aiDa---t----H~~~FhQvEGlvVd~----~vs~~dLkg~L~~fl~~~f~~~~k  263 (534)
T 2du3_A          195 LSHIADKLPLPIKLFSIDRCFRREQGEDA---T----RLYTYFSASCVLVDE----ELSVDDGKAVAEALLRQFGFENFR  263 (534)
T ss_dssp             HHTTTTTSCSSEEEEEEEEEECCCTTCSS---S----CCSEEEEEEEEEECS----SCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCCCCC---C----CCCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             99997368998589615622235655654---3----174105710488669----888999999999999997687757


Q ss_pred             HHHCCCCCH-HCCCHHHEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEE
Q ss_conf             753037801-178443402410110100--------4833237531021007645326847
Q gi|254780680|r  317 YRVVSLCTG-DLGFSACKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRY  368 (430)
Q Consensus       317 yRvv~~~sg-dlg~~a~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry  368 (430)
                      +|..  ++- ---. -+-..|+.++.|+        .+.|.||.-|.-..----+.++|.|
T Consensus       264 ~R~r--psyFPFte-Ps~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GIdy  321 (534)
T 2du3_A          264 FRKD--EKRSKYYI-PDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY  321 (534)
T ss_dssp             EEEC--TTCCTTBC-TTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS
T ss_pred             EEEC--CCCCCCCC-CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCC
T ss_conf             9746--88799999-9534799995058865555758966999677466878886469898


No 44 
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=96.80  E-value=0.0012  Score=46.30  Aligned_cols=118  Identities=17%  Similarity=0.293  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCH-HHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf             8899999999999862232032021235620278898655142-247677643100023134541145445342059555
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIP-KFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS  249 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp-~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~  249 (430)
                      .-++--.+++.+-++ ..++||++|.||.|..  +-.|.+-.| .+....  -+.+.||.-..+.     |....+- ..
T Consensus       182 i~r~Rs~i~~~iR~f-~~~~gFiEVeTPiL~~--~~~ga~~~~~~~~~~~--~~~~~yL~qSpql-----~~q~lm~-~g  250 (504)
T 1e1o_A          182 TFVVRSKILAAIRQF-MVARGFMEVETPMMQV--IPGGASARPFITHHNA--LDLDMYLRIAPEL-----YLKRLVV-GG  250 (504)
T ss_dssp             HHHHHHHHHHHHHHH-HHTTTCEECCCCSEES--SCCSSCCCCCEEEETT--TTEEEEECSCSHH-----HHHHHHH-HT
T ss_pred             HHHHHHHHHHHHHHH-HHHCCCEEEEECCEEE--ECCCCCCCCEECCCCC--CCCCCCCCCCHHH-----HHHHHHH-HC
T ss_conf             999999999999999-9857967986031254--1487667640005557--8967211558689-----9999986-03


Q ss_pred             HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0420885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r  250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L  313 (430)
                      + =|+..++||||.| ++   ++|   |.-+|+-+|+..      |+..++.+....|++++.+
T Consensus       251 ~-~rvfei~~~FR~E-~~---~tr---H~~EFt~le~e~------af~d~~d~m~~~E~li~~i  300 (504)
T 1e1o_A          251 F-ERVFEINRNFRNE-GI---SVR---HNPEFTMMELYM------AYADYHDLIELTESLFRTL  300 (504)
T ss_dssp             C-CEEEEEEEEECCC-CC---CC----CCSEEEEEEEEE------ESCCHHHHHHHHHHHHHHH
T ss_pred             C-CHHEEECCEECCC-CC---CCC---CCCCEEEEEEEE------HHCCHHHHHHHHHHHHHHH
T ss_conf             1-1222553015477-67---766---896355533100------2077898999899999999


No 45 
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=96.74  E-value=0.0064  Score=40.82  Aligned_cols=115  Identities=16%  Similarity=0.302  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             88999999999998622320320212356202788986551422476776431000231345411454453420595550
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
                      .-++--++++..-++. .++||++|-||.|+.... +|.+..  |.-.  ..+.+.||.-..|.     |+...+.. .+
T Consensus       243 i~r~Rs~i~~~iR~ff-~~~gFlEVeTPiL~~~~~-eg~~~~--f~~~--~~~~~~yL~~SPel-----~~k~ll~~-g~  310 (548)
T 3i7f_A          243 IFRIQSACCGLFREFL-TSQKFVEIHTPKLIGCSS-EGGSNI--FEVK--YFDRKAYLAQSPQL-----YKQMAIMG-DF  310 (548)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCEECCCCSBC------------------------CCBCSCTHH-----HHHHHHTT-TC
T ss_pred             HHHHHHHHHHHHHHHH-HHCCCEEEECCEECCCCC-CCCCCC--CCCC--CCCHHHHHHHHHHH-----HHHHHHHC-CC
T ss_conf             9999999999999999-977998988872123676-765560--0011--11126676332678-----99999862-66


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCC-CCCHHHHHHHHHH
Q ss_conf             42088532210788433554343212222102002121-278-6501457898999
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITR-EEDSFTEHERMLS  304 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~-pe~S~~~~e~~~~  304 (430)
                       =|+..+++|||.|-..    |  -....+|+-+|... |.+ -++-....++|+.
T Consensus       311 -~rVfeI~~~FR~E~~~----t--~rHlpEFT~LE~e~a~~~~~~d~m~~~e~l~~  359 (548)
T 3i7f_A          311 -RKVFEVGPVFRAENSN----T--RRHLTEFEGLDIEMEIVENYHECIDVMEKLFT  359 (548)
T ss_dssp             -CEEEEEEEECCCSCCC----S--SSCCSCEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred             -CCCCCCCEEEECCCCC----C--CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -3234434056645455----5--55687515501007789889999999999999


No 46 
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=96.73  E-value=0.0013  Score=46.07  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999999862232032021235620278898655142247677643100023134541145445342059555042
Q gi|254780680|r  173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL  252 (430)
Q Consensus       173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi  252 (430)
                      ++.-.+++.+-++ +.++||++|.||.|.....-.|...+..   .....+...||....|     +|....+ -.-+ =
T Consensus       175 ~~Rs~i~~~iR~f-l~~~gFlEVeTP~L~~~~~~~~a~~f~~---~~~~~~~~~~L~~Spq-----l~~k~lm-v~g~-~  243 (493)
T 3a74_A          175 ITRSLIIQSMRRY-LDSHGYLEVETPMMHAVAGGAAARPFIT---HHNALDMTLYMRIAIE-----LHLKRLI-VGGL-E  243 (493)
T ss_dssp             HHHHHHHHHHHHH-HHHTTCEECCCCSEESSCCSSSSCCCEE---EETTTTEEEEECSCSH-----HHHHHHH-HTTC-C
T ss_pred             HHHHHHHHHHHHH-HHHCCCCEECCCCCCEECCCCCCCCCCC---CCCCCCCCCCCCCCCC-----HHHHHHH-HHHH-C
T ss_conf             9999999999999-9865973331776410037866655201---5446886743367821-----5789888-7410-5


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEE-ECCCCCCHHHHHHHHHHH
Q ss_conf             08853221078843355434321222210200212-127865014578989999
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV-SITREEDSFTEHERMLSC  305 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~-~~~~pe~S~~~~e~~~~~  305 (430)
                      ||..++||||.|-    .++   -|+-+|+-+|+. +|++-++-....|.|+..
T Consensus       244 rvfqI~~~FR~E~----~~~---~h~pEFT~le~e~af~d~~d~m~~~E~l~~~  290 (493)
T 3a74_A          244 KVYEIGRVFRNEG----IST---RHNPEFTMLELYEAYADFRDIMKLTENLIAH  290 (493)
T ss_dssp             EEEEEEEEECCCC----CBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred             CEEEEECEECCCC----CCC---CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             4789700035787----887---8860668778887633798899889999999


No 47 
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=96.47  E-value=0.0014  Score=45.82  Aligned_cols=115  Identities=14%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEE
Q ss_conf             99999986223203202123562027889865514224767764310002313454114544534205955504208853
Q gi|254780680|r  178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTL  257 (430)
Q Consensus       178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~  257 (430)
                      +.+|.-  .+.++||.|+.||.+-..+...+-.++    |   +.+..++|-|=--+|++-+++..   ..+.|+|++-.
T Consensus         9 ~~s~~~--~~~~~Gy~~i~tP~lE~~e~~~~~~f~----D---~~G~~l~LRpD~T~~iaR~~~~~---~~~~~~k~~Y~   76 (275)
T 1usy_A            9 VFSFYS--KATKKGFSPFFVPALEKAEEPAGNFFL----D---RKGNLFSIREDFTKTVLNHRKRY---SPDSQIKVWYA   76 (275)
T ss_dssp             HHHHHH--HHHHTTCEECCCCSEEECSSCCSSCEE----E---TTSCEEEECCCHHHHHHHHHTTC---TTCCCEEEECC
T ss_pred             HHHHHH--HHHHCCCCEEECCCEEEEEECCCCEEE----C---CCCCEEEECCCCCHHHHHHHHHC---CCCCCEEEEEE
T ss_conf             999999--999759816578751000100166668----6---99999997887809999999963---99998169997


Q ss_pred             ECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             22107884335543432122221020021212786501457898999999999984106
Q gi|254780680|r  258 APSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH  316 (430)
Q Consensus       258 s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp  316 (430)
                      +++||.+.+.       .-..+|+. +|+|.-.    |...--|++..+-++++.|++.
T Consensus        77 g~vfR~~~~~-------~re~~Q~G-~E~iG~~----~~~aDaEvi~l~~~~l~~l~~~  123 (275)
T 1usy_A           77 DFVYRYSGSD-------LVAEYQLG-LEKVPRN----SLDDSLEVLEIIVESASEFFEG  123 (275)
T ss_dssp             EEEEEEETTE-------EEEEEEEE-EEEESCC----SHHHHHHHHHHHHHHHHHHCCS
T ss_pred             ECEEECCCCC-------CCCCEEEE-EEEECCC----CCHHHHHHHHHHHHHHHHHCCC
T ss_conf             0778727886-------55416965-9985898----8777999999999999983888


No 48 
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=96.47  E-value=0.0015  Score=45.50  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             88999999999998622320320212356202788986551422476776431000231345411454453420595550
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
                      .-++-..+++.+-++ +.++||.+|.||.|+....-.+.-.++.   .  .-+.++||.-..|.     |..-.+.  -+
T Consensus       134 ~~r~Rs~i~~~iR~~-l~~~gF~EVeTP~L~~~~~~g~a~~~~~---~--~~~~~~~L~~spql-----~~k~li~--G~  200 (434)
T 1x54_A          134 IMKVKETLIMAAREW-LLKDGWHEVFPPILVTGAVEGGATLFKL---K--YFDKYAYLSQSAQL-----YLEAAIF--GL  200 (434)
T ss_dssp             HHHHHHHHHHHHHHH-HHHTTCEECCCCSEESCCSSCGGGCCEE---E--ETTEEEEECSCSHH-----HHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHH-HHHCCEEEEEECEEEEECCCCCCCCCEE---C--CCCCCHHHCCCHHH-----HHHHHHC--CC
T ss_conf             898999999999998-7627849985010255214566666310---1--25603342143666-----6666402--53


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC-CCCCCHHHHHHHHHHH
Q ss_conf             420885322107884335543432122221020021212-7865014578989999
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFTEHERMLSC  305 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~-~~pe~S~~~~e~~~~~  305 (430)
                       =|+..+++|||.|-+.    +  --...+|+-+|.... .+-++-....|+|+..
T Consensus       201 -~rvfei~~~FR~E~~~----~--~rH~pEFt~lE~y~a~~d~~~~m~~~e~li~~  249 (434)
T 1x54_A          201 -EKVWSLTPSFRAEKSR----T--RRHLTEFWHLELEAAWMDLWDIMKVEEELVSY  249 (434)
T ss_dssp             -SEEEEEEEEECCCCCC----C--SSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred             -CCEEECCCEECCCCCC----C--CCCCCCEEEECHHHHCCCHHHHHHHHHHHHHH
T ss_conf             -3115424302367666----8--66676534211254238899999999999999


No 49 
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str}
Probab=96.37  E-value=0.0037  Score=42.57  Aligned_cols=112  Identities=18%  Similarity=0.342  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHC
Q ss_conf             89999999999986223203202123562027889865514224767764310002313454114544534205955504
Q gi|254780680|r  172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLP  251 (430)
Q Consensus       172 A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LP  251 (430)
                      -++--++++..-++ ..++||++|.||.|+...+ +|.+..  |.-  ..-+.+.||.-..|     +| .+.+- .-++
T Consensus       134 ~r~Rs~i~~~iR~f-~~~~gf~EV~TP~L~~~~~-~g~a~~--f~~--~~~~~~~~L~~Spe-----l~-K~l~~-~g~~  200 (429)
T 1wyd_A          134 IKIQSLALKAFRET-LYKEGFIEIFTPKIIASAT-EGGAQL--FPV--IYFGKEAFLAQSPQ-----LY-KELMA-GVVE  200 (429)
T ss_dssp             HHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCS-STTCCC--CEE--EETTEEEEECSCCH-----HH-HHHHH-HHHS
T ss_pred             HHHHHHHHHHHHHH-HHHCCCEEECCCCCCCCCC-CCCCCC--CCE--EECCCCCEECCCHH-----HH-HHHHH-HHHC
T ss_conf             99999999999987-7743855533864346667-642234--410--51597724303899-----88-88865-3110


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH
Q ss_conf             2088532210788433554343212222102002121-278650145789899
Q gi|254780680|r  252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML  303 (430)
Q Consensus       252 ik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~  303 (430)
                       |+..+++|||.|-+.    ++  ...-+|+.+|... +.+-++.....|.|+
T Consensus       201 -rvf~i~~~FR~E~~~----~~--rH~pEFtmlE~y~a~~d~~~~m~~~E~l~  246 (429)
T 1wyd_A          201 -RVFEVAPAWRAEESD----TP--FHLAEFISMDVEMAFADYNDVMQLLEKIL  246 (429)
T ss_dssp             -EEEEEEEEECCCCCC----SS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred             -CEEEEECCCCCCCCC----CC--CCCCCCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf             -006750320036787----64--34566420220024455678899999999


No 50 
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.34  E-value=0.0038  Score=42.54  Aligned_cols=206  Identities=14%  Similarity=0.232  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf             48899999999999862232032021235620278898655142247677643100023134541145445342059555
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS  249 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~  249 (430)
                      ..-++.-++++.+-++ ..++||++|.||.|+... .+|.+..  |.-.  ..+.+.||.-..|.     |....+.. -
T Consensus       176 ~i~r~Rs~i~~~iR~f-f~~~gFlEVeTPiL~~~~-~~g~~~~--f~~~--~~~~~~yL~~Spel-----~~k~l~~~-g  243 (487)
T 1eov_A          176 AIFRIQAGVCELFREY-LATKKFTEVHTPKLLGAP-SEGGSSV--FEVT--YFKGKAYLAQSPQF-----NKQQLIVA-D  243 (487)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSC-SSSSSCC--CEEE--ETTEEEEECSCTHH-----HHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCHHHC--CCEE--ECCCCCHHHHHHHH-----HHHHHHHC-C
T ss_conf             6785899999998731-014988999885424567-5203431--3300--02765303350699-----99998752-4


Q ss_pred             HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCC
Q ss_conf             042088532210788433554343212222102002121-2786501457898999999999984106753037801178
Q gi|254780680|r  250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLG  328 (430)
Q Consensus       250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg  328 (430)
                      + =|+..++||||.|-..    +.  -..-+|+.+|... |++      .+++|.+..++++..+--.  +..-+..++-
T Consensus       244 ~-~rvfei~~~FR~E~~~----t~--RHlpEFtmlE~e~af~~------~~~~i~~~~e~l~~~~~~~--~~~~~~~~~~  308 (487)
T 1eov_A          244 F-ERVYEIGPVFRAENSN----TH--RHMTEFTGLDMEMAFEE------HYHEVLDTLSELFVFIFSE--LPKRFAHEIE  308 (487)
T ss_dssp             C-CEEEEEEEEECCCCCC----CT--TCCSEEEEEEEEEECSS------CTHHHHHHHHHHHHHHHHH--HHHHCHHHHH
T ss_pred             C-CCCEEEECCEECCCCC----CC--CCCCCCEEEHHHHHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf             5-5653763013056655----53--45633122013255678------8999999999999999999--8775455776


Q ss_pred             CHHHEEEEEE-EECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             4434024101-101004833237531021007645326847338998410104200432289999999988346899838
Q gi|254780680|r  329 FSACKTYDLE-VWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV  407 (430)
Q Consensus       329 ~~a~~~~DiE-~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i  407 (430)
                      .- ...+.++ .-.|....|..++...-....++  .+....  .+      .-+   .-...+.+..+++.....+-.+
T Consensus       309 ~~-~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~--~~~~~~--~~------~~~---~~~~~~~l~~~~~~~~~~~~~~  374 (487)
T 1eov_A          309 LV-RKQYPVEEFKLPKDGKMVRLTYKEGIEMLRA--AGKEIG--DF------EDL---STENEKFLGKLVRDKYDTDFYI  374 (487)
T ss_dssp             HH-HHHSCCCCCCCCTTCCCEEEEHHHHHHHHHH--TTCCCC--TT------CCC---CHHHHHHHHHHHHHHSCCSEEE
T ss_pred             HH-HCCCCCCEEECCCCCCHHEEEHHHHHHHHHH--HHHHCC--CC------CCC---CHHHHHHHHHHHHHHCCCCCEE
T ss_conf             53-1136641021035773320108767889987--654024--30------200---0356788999998750688578


Q ss_pred             E--CCCCCCCC
Q ss_conf             6--58222310
Q gi|254780680|r  408 T--IPTVLRPY  416 (430)
Q Consensus       408 ~--iP~~L~py  416 (430)
                      .  .|..+.|+
T Consensus       375 v~~~P~~~~p~  385 (487)
T 1eov_A          375 LDKFPLEIRPF  385 (487)
T ss_dssp             EECCBGGGSCT
T ss_pred             EECCCCCCCCH
T ss_conf             63482101802


No 51 
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.25  E-value=0.0039  Score=42.44  Aligned_cols=114  Identities=18%  Similarity=0.303  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             88999999999998622320320212356202788986551422476776431000231345411454453420595550
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
                      .-++--.+++.+-++ +.++||++|.||.|+.... +|.+...  .-..  .+.+.||.-..|.     |..-++  ..+
T Consensus       155 ~l~~Rs~i~~~iR~f-~~~~gF~EVeTP~L~~~~~-eg~~~~f--~~~~--~~~~~~L~~spql-----~kq~~~--~g~  221 (456)
T 3m4p_A          155 VLQLRSEIQWYFRKY-YHDNHFTEIQPPTIVKTQC-EGGSTLF--KLQY--FNEPAYLTQSSQL-----YLESVI--ASL  221 (456)
T ss_dssp             HHHHHHHHHHHHHHH-HHHTTCEECCCCSEEC-------CCCC--EEEE--TTEEEEECSCCHH-----HHHTTH--HHH
T ss_pred             HHHHHHHHHHHHHHH-HCCCCEEEECCCEECCCCC-CCHHHCC--CCCC--CCHHHHCCCCHHH-----HHHHHH--HCC
T ss_conf             999999999999862-0356368852976725466-4312135--4322--2111320387887-----512334--304


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHHH
Q ss_conf             42088532210788433554343212222102002121-2786501457898999
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERMLS  304 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~~  304 (430)
                       -|+...++|||+|-+.   +.|   ...+|+-+|... +.+-++-.+..++|+.
T Consensus       222 -~rvf~i~~~fR~E~~~---~~r---H~pEFt~lE~e~a~~d~~~~m~~~e~li~  269 (456)
T 3m4p_A          222 -GKSFCMLSSYRAEQSR---TVR---HLAEYLHLEAELPFISFEDLLNHLEDLVC  269 (456)
T ss_dssp             -SSEEEEEEEECCCSCC---CSS---CCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             -CCEEEECCCEECCCCC---CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -6505622403336653---111---54320110144435678878999999999


No 52 
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=95.78  E-value=0.0094  Score=39.59  Aligned_cols=118  Identities=16%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH---H--HHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCC
Q ss_conf             88999999999998622320320212356202788---9--865514224767764310002313454114544534205
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA---M--YGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEII  245 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~---~--~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l  245 (430)
                      .-++.-.+++.+-++. .++||++|.||.+-....   .  .++|..| |.-+.|  +.+.||.-..|.     |+...+
T Consensus        14 il~~Rs~i~~~iR~ff-~~~~f~EV~tPil~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~L~~Spql-----~~k~~l   84 (294)
T 1nnh_A           14 TLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEP-AEVEIY--GVKMRLTHSMIL-----HKQLAI   84 (294)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCC-CEEEET--TEEEEECSCSHH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCEEECCCCHHH-----HHHHHH
T ss_conf             9999999999999999-9889999848734566777677655676635-635678--966751578888-----898998


Q ss_pred             CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH
Q ss_conf             9555042088532210788433554343212222102002121-278650145789899
Q gi|254780680|r  246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML  303 (430)
Q Consensus       246 ~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~  303 (430)
                      .. .+ =|+..++||||.|.+..  +  +--..-+|+.+|... +++-++-....++|+
T Consensus        85 ~~-g~-~~vf~I~~~FR~E~~~~--~--~~rH~~EFtmLE~e~~~~d~~dlm~~~e~li  137 (294)
T 1nnh_A           85 AM-GL-KKIFVLSPNIRLESRQK--D--DGRHAYEFTQLDFEVERAKMEDIMRLIERLV  137 (294)
T ss_dssp             HT-TC-CEEEEEEEEECCCCGGG--C--SSSCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred             HH-HC-CCCEEEECEECCCCCCC--C--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             73-02-56446504564787888--8--7755400146505984001989999999999


No 53 
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=95.76  E-value=0.054  Score=33.97  Aligned_cols=36  Identities=8%  Similarity=0.132  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999886444666667788877443100225
Q gi|254780680|r   73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNV  108 (430)
Q Consensus        73 Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi  108 (430)
                      +..+.+.|+..+.+++.++..+++++..+--.+.+.
T Consensus       166 ie~qi~~Lq~~l~elq~kIq~LE~qI~q~~ek~~~~  201 (464)
T 1m1j_B          166 IPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSP  201 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999999999999998788750566


No 54 
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=95.70  E-value=0.018  Score=37.55  Aligned_cols=98  Identities=20%  Similarity=0.367  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf             48899999999999862232032021235620278898655142247677643100023134541145445342059555
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS  249 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~  249 (430)
                      +.-++--++++.+-++ +.++||++|.+|.|.....--|.-.+|.   .  ....++||.-..|..+     ...+-. -
T Consensus       135 ~~~~~Rs~i~~~iR~f-l~~~gF~EVeTPiL~~~~~eg~a~~f~~---~--~~~~~~~L~~Spel~l-----k~l~~~-G  202 (438)
T 3nem_A          135 AIFKIRSSVFKAVRDF-FHENGFIEIHTPKIIATATEGGTELFPM---K--YFEEDAFLAQSPQLYK-----QIMMAS-G  202 (438)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHTTCEECCCCSEESSCSSCSSSCCEE---E--ETTEEEEECSCSHHHH-----HHGGGT-T
T ss_pred             CEEHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCCCCC---C--CCCCCEEEECCHHHHH-----HHHHHC-C
T ss_conf             2006889999999998-7547967997764424466655444663---1--3688753503856887-----887651-4


Q ss_pred             HCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEE
Q ss_conf             042088532210788433554343212222-10200212
Q gi|254780680|r  250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELV  287 (430)
Q Consensus       250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~  287 (430)
                      + =|+..+++|||.|-.    ++   -|.| +|.-+|..
T Consensus       203 ~-~rvfei~~~FR~E~~----~~---~rh~~ef~~~~~~  233 (438)
T 3nem_A          203 L-DRVYEIAPIFRAEEH----NT---TRHLNEAWSIDSE  233 (438)
T ss_dssp             C-CEEEEEEEEECCCSS----CC---TTCCSEEEEEEEE
T ss_pred             C-CCEEEEEEECCCCCC----CC---CCCCCCEEEEHHH
T ss_conf             8-852897330144557----77---5544238870889


No 55 
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=95.58  E-value=0.048  Score=34.32  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             799999999999998864446666677888774431002258
Q gi|254780680|r   68 SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP  109 (430)
Q Consensus        68 ~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~  109 (430)
                      +.+..|.....++..+|+.+++++..+++.+........+++
T Consensus       168 ~qi~~Lq~~l~elq~kIq~LE~qI~q~~ek~~~~~~~~~~~~  209 (464)
T 1m1j_B          168 SSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSPCVASCNIP  209 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999999999999999999999878875056654455457


No 56 
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=95.49  E-value=0.0095  Score=39.56  Aligned_cols=120  Identities=14%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf             48899999999999862232032021235620278898655142247677643100023134541145445342059555
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS  249 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~  249 (430)
                      ...++--++++.+-++ +.++||++|.||.|.... -+|.|.+  |.-..+.-+..+||.-..|..+     .. +--..
T Consensus       136 ~~~r~Rs~i~~~~r~~-l~~~gF~EV~TP~L~~~~-~ega~~~--f~~~~~~~~~~~~L~~Spqly~-----q~-l~~~g  205 (585)
T 1c0a_A          136 QRLKTRAKITSLVRRF-MDDHGFLDIETPMLTKAT-PEGARDY--LVPSRVHKGKFYALPQSPQLFK-----QL-LMMSG  205 (585)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHTTCEECCCCSSBCCC-SSSSCCC--EEECSSSTTCEEECCSCSHHHH-----HH-HHHTT
T ss_pred             HHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCC-CCCCCCC--EEEEECCCCCCCCCCCCCHHHH-----HH-HHHHC
T ss_conf             9999999999999999-987899899898546778-7656675--5425548775102787835888-----98-88606


Q ss_pred             HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0420885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r  250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L  313 (430)
                      + =|+..++||||.|-.    +|+   |.-.|+-+|+..      |+.-++++....|+++..+
T Consensus       206 ~-~rVfeig~~FR~E~~----~t~---r~pEFt~le~e~------a~~~~~d~m~~~E~l~~~i  255 (585)
T 1c0a_A          206 F-DRYYQIVKCFRDEDL----RAD---RQPEFTQIDVET------SFMTAPQVREVMEALVRHL  255 (585)
T ss_dssp             C-CEEEEEEEEECCCCC----BTT---BCSEEEEEEEEE------ESCCHHHHHHHHHHHHHHH
T ss_pred             C-CEEEEECCCCCCCCC----CCC---CCCCCCEEHHHH------HHHHHHHHHHHHHHHHHHH
T ss_conf             6-616896442126888----886---686431008988------7766778999998999999


No 57 
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=95.41  E-value=0.019  Score=37.37  Aligned_cols=116  Identities=20%  Similarity=0.222  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH-HHHCCEECCCCCCHHHHHHHHHCCCH
Q ss_conf             64889999999999986223203202123562027889865514224767764-31000231345411454453420595
Q gi|254780680|r  169 GHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC-TTDGRWLIPTSEVSLTNLYSHEIIES  247 (430)
Q Consensus       169 g~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~-~~d~l~Li~TaEvpL~~~~~~~~l~~  247 (430)
                      .+..++--++++.+-++ +.++||++|.||.|... .-+|.|-+-   -..+. .+..+||.-..|..+--+.      .
T Consensus       141 ~~~~r~Rs~i~~~~r~f-~~~~gF~eV~TPiLt~~-~~eGa~~f~---v~~~~~~~~~~~L~~Spql~~q~l~------~  209 (580)
T 1l0w_A          141 QENLRLRHRVIKAIWDF-LDREGFVQVETPFLTKS-TPEGARDFL---VPYRHEPGLFYALPQSPQLFKQMLM------V  209 (580)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHTTCEECCCCSSBCC-CSSSSCCCE---EECTTSTTEEEECCSCSHHHHHHHH------H
T ss_pred             HHHHHHHHHHHHHHHHH-HHHCCCEEEEEHHEECC-CCCCCCCCE---ECCCCCCCCCCCCCCCHHHHHHHHH------H
T ss_conf             99999999999999999-98659779860011036-874467853---4622688834245658689999988------6


Q ss_pred             HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH
Q ss_conf             55042088532210788433554343212222102002121-278650145789899
Q gi|254780680|r  248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML  303 (430)
Q Consensus       248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~  303 (430)
                      ..+ =|+..++||||.|-..    |+   |.-+|+.+|+.. |.+.++-....++|+
T Consensus       210 ~g~-~rvfei~~~FR~E~~~----t~---r~~EFt~le~e~a~~~~~~~m~~~e~~i  258 (580)
T 1l0w_A          210 AGL-DRYFQIARCFRDEDLR----AD---RQPDFTQLDLEMSFVEVEDVLELNERLM  258 (580)
T ss_dssp             TTC-SEEEEEEEEECCCCCC----SS---CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred             CCC-CCEEEEECCCCCCCCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             267-7258960342478888----87---4155542346652277999887668999


No 58 
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1
Probab=95.01  E-value=0.09  Score=32.32  Aligned_cols=110  Identities=22%  Similarity=0.356  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999999862232032021235620278898655142247677643100023134541145445342059555042
Q gi|254780680|r  173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL  252 (430)
Q Consensus       173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi  252 (430)
                      ++--++++.+-++ ..++||.+|.||.++... .+|.++.  |.-+.  .+.+.||.-..|     +| .+.+- .-+ =
T Consensus       126 ~~Rs~i~~~iR~f-~~~~gflEVeTP~l~~~~-~~~~~~~--f~~~~--~~~~~~L~~Spe-----l~-K~l~~-~g~-~  191 (422)
T 1n9w_A          126 KVQAALVRGFRRY-LDRQDFTEIFTPKVVRAG-AEGGSGL--FGVDY--FEKRAYLAQSPQ-----LY-KQIMV-GVF-E  191 (422)
T ss_dssp             HHHHHHHHHHHHH-HHHTTCEECCCC---------------------------------CH-----HH-HHHHH-HHH-S
T ss_pred             HHHHHHHHHHHHH-HHCCCCEECCCCCCCCCC-CCCCCCC--CCCCC--CCCCCCCCCCHH-----HH-HHHHH-CCC-C
T ss_conf             7999999999766-532896713697123577-6667656--78765--688842430879-----98-77763-143-4


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-C-CCCCCHHHHHHHH
Q ss_conf             088532210788433554343212222102002121-2-7865014578989
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-I-TREEDSFTEHERM  302 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~-~~pe~S~~~~e~~  302 (430)
                      |+..+++|||.|-+..   .|   ..-+|+-+|... | .+-++-....|.|
T Consensus       192 rvfei~~~FR~ee~~~---~r---h~~EFt~le~~~a~~~d~~d~~~l~E~~  237 (422)
T 1n9w_A          192 RVYEVAPVWRMEEHHT---SR---HLNEYLSLDVEMGFIADEEDLMRLEEAL  237 (422)
T ss_dssp             EEEEEEEC-------------------CCEEEEEEEESCSSHHHHHHHHHHH
T ss_pred             CCEEECCCCCCCCCCC---CC---CCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             1025533212578876---45---6843677887652111398888889999


No 59 
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=93.79  E-value=0.24  Score=29.18  Aligned_cols=30  Identities=7%  Similarity=-0.052  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999
Q gi|254780680|r   29 YILSLDEKNRILIKKIEDIRARRNSNSAQI   58 (430)
Q Consensus        29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeI   58 (430)
                      +|..|.++.++++.++++++.+.+.+..++
T Consensus        39 eI~~Le~~l~el~~~l~ele~~Iq~Lq~ql   68 (409)
T 1m1j_C           39 ELLEIEGLLQQATNSTGSIEYLIQHIKTIY   68 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999


No 60 
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.39  E-value=0.24  Score=29.19  Aligned_cols=28  Identities=14%  Similarity=-0.039  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999
Q gi|254780680|r   30 ILSLDEKNRILIKKIEDIRARRNSNSAQ   57 (430)
Q Consensus        30 il~Ld~~rr~l~~e~e~LraerN~lSKe   57 (430)
                      +..+.+.+|+.+.++++++...|+.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (562)
T 3ghg_A           87 TTNIMEILRGDFSSANNRDNTYNRVSED  114 (562)
T ss_dssp             HHHHHHTTSSHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999889999999999


No 61 
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=92.29  E-value=0.7  Score=25.70  Aligned_cols=28  Identities=11%  Similarity=0.011  Sum_probs=16.4

Q ss_pred             CCCHHHHHCCHHHHHHHHHHCCCCCCHH
Q ss_conf             9884478519999999998469895889
Q gi|254780680|r    1 MLDIQWIRQNPEHLDIALKKRHLEPQSE   28 (430)
Q Consensus         1 MLDik~IRen~e~v~~~l~~R~~~~~id   28 (430)
                      |++++.+.+..+.+.+.+..=..-+|+|
T Consensus         1 M~~~~~~~~~i~~l~~~~~~l~~~ld~d   28 (365)
T 1gqe_A            1 MFEINPVNNRIQDLTERSDVLRGYLDYD   28 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             9663899999999999999998767989


No 62 
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=91.45  E-value=0.48  Score=26.88  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999886444666667788877443
Q gi|254780680|r   77 TSTLKEQLPILEKEEHEVCSSLKKLI  102 (430)
Q Consensus        77 ~~~Lk~eik~le~~~~~le~el~~ll  102 (430)
                      .+.+.+.+..+.+++..++.++..+.
T Consensus       165 I~~LQ~~i~~l~~kIq~Leq~Isq~e  190 (461)
T 3ghg_B          165 LRVLRSILENLRSKIQKLESDVSAQM  190 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999998888


No 63 
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.55  E-value=0.76  Score=25.42  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254780680|r   34 DEKNRILIKKIEDIRARRNSN   54 (430)
Q Consensus        34 d~~rr~l~~e~e~LraerN~l   54 (430)
                      |+..|.+..++++|+.+.+++
T Consensus        56 ~~~~~~~~~~i~~l~~~~~~~   76 (562)
T 3ghg_A           56 DEVNQDFTNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             886544889999999999999


No 64 
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=90.32  E-value=1.1  Score=24.32  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254780680|r   35 EKNRILIKKIEDIRARRNSNS   55 (430)
Q Consensus        35 ~~rr~l~~e~e~LraerN~lS   55 (430)
                      +..+++..++++|+.+.+.+.
T Consensus        60 ~~~~~~~~~i~~l~~~l~~~q   80 (390)
T 1deq_A           60 EVDQDFTSRINKLRDSLFNYQ   80 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 65 
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=86.84  E-value=1.8  Score=22.71  Aligned_cols=190  Identities=15%  Similarity=0.120  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCCCCCHHHH----CCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH
Q ss_conf             565665666211220221----1731000112221675301056488999999999998622320320212356202788
Q gi|254780680|r  130 KKPSAIHLSREHFEIGEA----LGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA  205 (430)
Q Consensus       130 ~~~~f~f~~k~H~elge~----l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~  205 (430)
                      .+|.+.+....-.||.|.    +|.=.+.. .....+... -....-.+.+.+-    +..+ ..||.|+.+..|+.++.
T Consensus       350 ~vPs~R~DI~~~~DliEEIaRiyGydnI~~-~~p~~~~~~-~~~~~~~~~~~ir----~~L~-~~Gf~E~itysf~s~~~  422 (589)
T 3l4g_B          350 EIPPTRADIIHACDIVEDAAIAYGYNNIQM-TLPKTYTIA-NQFPLNKLTELLR----HDMA-AAGFTEALTFALCSQED  422 (589)
T ss_dssp             EECSSCTTCCSHHHHHHHHHHHHCGGGSCC-CCCCCCCCC-CCCHHHHHHHHHH----HHHH-HTTCEECCCCSEECHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCC-CCCHHHHHHHHHH----HHHH-HCCCCCEEEECCCCHHH
T ss_conf             488755645875417888886700302666-677644556-5785799999999----9999-71212202002569899


Q ss_pred             HHHHHHCHHHHHHHHHHH----HCCEECCCCCC-HH-HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             986551422476776431----00023134541-14-5445342059555042088532210788433554343212222
Q gi|254780680|r  206 MYGTGQIPKFADDMFCTT----DGRWLIPTSEV-SL-TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH  279 (430)
Q Consensus       206 ~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv-pL-~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH  279 (430)
                      +..-+..+...+....+.    +++--.=|+=. +| .++-.+.  . ...|++++.++++|.++.++.    .|.   .
T Consensus       423 ~~~~~~~~~~~~~~v~l~NPis~e~s~lR~sLlp~LL~~~~~N~--~-~~~~~~lFEiG~Vf~~~~~~~----~~~---~  492 (589)
T 3l4g_B          423 IADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR--K-MPLPLKLFEISDIVIKDSNTD----VGA---K  492 (589)
T ss_dssp             HTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTT--T-SCSCEEEEEEEEEEEECTTST----TSE---E
T ss_pred             HHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH--C-CCCCEEEEEECCEECCCCCCC----CCC---C
T ss_conf             98763556665642896087534444420257688999999731--6-799767997314472688643----453---0


Q ss_pred             EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCC
Q ss_conf             1020021212786501457898999999999984106753037801178443402410110100483
Q gi|254780680|r  280 QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNL  346 (430)
Q Consensus       280 QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~  346 (430)
                      |..++-. .++..+.   -+..+-...+.+++.|+++.-.      +-+.-..+..+...|.|||..
T Consensus       493 ~~~~l~~-~~~~~~~---~f~~~kg~~e~ll~~l~i~~~~------~~~~~~~~~~~~~~~hPgrsA  549 (589)
T 3l4g_B          493 NYRHLCA-VYYNKNP---GFEIIHGLLDRIMQLLDVPPGE------DKGGYVIKASEGPAFFPGRCA  549 (589)
T ss_dssp             EEEEEEE-EEESSSC---CHHHHHHHHHHHHHHTTCCBST------TTTSEEEEECCCTTEEEEEEE
T ss_pred             CCCEEEE-EECCCCC---CHHHHHHHHHHHHHHCCCCCCC------CCCCEEEECCCCCCCCCCCEE
T ss_conf             1147889-9708999---9999999999999872997445------666379964878876898769


No 66 
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.20A {Eubacterium eligens atcc 27750}
Probab=86.69  E-value=1.8  Score=22.65  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999986449--98799999999999998864446666677888774
Q gi|254780680|r   33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK  100 (430)
Q Consensus        33 Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~  100 (430)
                      +-++.-++..+.+.++++.....++...++.+-  -....++++.+...+..++..++.++..++.++.+
T Consensus        66 iaDel~~~~~~~~~l~~~~~~~~~e~~~~k~el~~l~~e~e~l~e~le~l~~el~~L~~~l~~le~Ele~  135 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999998887889999989999999999998999999999999999999999999999999999999977


No 67 
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.32  E-value=2.1  Score=22.18  Aligned_cols=69  Identities=13%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999986449--------------987999999999999988644466666778887
Q gi|254780680|r   33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--------------NLSLVDALKNETSTLKEQLPILEKEEHEVCSSL   98 (430)
Q Consensus        33 Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--------------~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el   98 (430)
                      +..++..+..++-++..+.+.+-|.+..+++.+              +...+++-+.+.+.+..+++.++....++..++
T Consensus        15 l~~e~~ei~~kigei~~~i~elkKal~ELk~a~GkCPvCgreLtEeHk~~Li~~y~~el~~~~~el~el~~~~~el~~ei   94 (112)
T 1l8d_A           15 IEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELEREL   94 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999987899999999999974787998899376898999999999999778999999998899999999


Q ss_pred             HHH
Q ss_conf             744
Q gi|254780680|r   99 KKL  101 (430)
Q Consensus        99 ~~l  101 (430)
                      ..+
T Consensus        95 ~ki   97 (112)
T 1l8d_A           95 RRI   97 (112)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 68 
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=84.94  E-value=2.2  Score=22.06  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999864499879999999999999886444666667788877443
Q gi|254780680|r   28 EYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI  102 (430)
Q Consensus        28 d~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll  102 (430)
                      ..+..+.+..+..+.+++++..+.+++..++-.....- ...+..+..+...|..+|..+..++..++.++..+.
T Consensus        86 ~~i~~l~~~lk~~~~~~~~~~~~~~~~~~eLe~~i~~L-k~~i~~~~~~i~~Lq~~ie~~~~~ik~Le~~i~~~~  159 (491)
T 1m1j_A           86 RVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL-KQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI  159 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999-999999999999999999999999999999999999


No 69 
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=83.36  E-value=2.5  Score=21.59  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CCC-HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             988-4478519999999998469895889999999999999999999999999999999998644998799999999999
Q gi|254780680|r    1 MLD-IQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETST   79 (430)
Q Consensus         1 MLD-ik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~   79 (430)
                      |+| ++-|.+..+.+.+.+..=++-.|.++..++-.+...+...++..+.-++.+ +++..+..-.++.+..++      
T Consensus         1 M~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~-~dl~el~el~~D~e~~el------   73 (354)
T 3d5a_X            1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVL-EDLEQAESLLDDPELKEM------   73 (354)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSTTCHHHHHH------
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHH------
T ss_conf             9157999999999999986198322399999999999999999999999999999-989999988528110789------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf             99886444666667788877443100225881122113555402420
Q gi|254780680|r   80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIR  126 (430)
Q Consensus        80 Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~  126 (430)
                      ..+++..+...+..+.+++...+  +|        .|+.++.|.++.
T Consensus        74 a~ee~~~l~~~l~~l~~ele~~l--L~--------~~~~D~~nailE  110 (354)
T 3d5a_X           74 AKAEREALLARKEALEKELERHL--LP--------KDPMDERDAIVE  110 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--ST--------TCCCCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--CC--------CCCCCCCCCEEE
T ss_conf             99999999877888999999971--77--------986555471799


No 70 
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=81.01  E-value=3  Score=20.99  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999998864446666
Q gi|254780680|r   70 VDALKNETSTLKEQLPILEKEE   91 (430)
Q Consensus        70 ~~~Lk~e~~~Lk~eik~le~~~   91 (430)
                      .+++.+|..+|.++++.+++.+
T Consensus       404 ~~kl~~E~~~l~~~i~~l~~IL  425 (716)
T 1zvu_A          404 EMKIRGEQSELEKERDQLQGIL  425 (716)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999997420


No 71 
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=79.60  E-value=3.3  Score=20.67  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCC-EECCCCCCHHH-HHHHHHCCCHHHHCC
Q ss_conf             999998622320320212356202788986551422476776431----000-23134541145-445342059555042
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGR-WLIPTSEVSLT-NLYSHEIIESKSLPL  252 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l-~Li~TaEvpL~-~~~~~~~l~~~~LPi  252 (430)
                      .+..-+..+ ..||.|+.+-.++..+.....+..|.  +....+.    ++. +|=+|==.+|. ++-.+  +.....|+
T Consensus        10 ~~~ir~~L~-~~Gf~Ev~tys~~~~~~~~~~~~~~~--~~~v~l~NPls~d~~~lR~sLlpgLL~~~~~N--~~~~~~~~   84 (213)
T 3ica_A           10 QTVVSEQLV-GAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLSHN--LRRKHLSL   84 (213)
T ss_dssp             HHHHHHHHH-HTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHH--HTTTCSEE
T ss_pred             HHHHHHHHH-HCCCCEEEECCCCCHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--HHCCCCCE
T ss_conf             999999999-78963001276789899987417875--67079528865668999887686499998766--65346663


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCCHH------HHHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf             088532210788433554343212222102002121278-65014------578989999999999841067530
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR-EEDSF------TEHERMLSCAEEILKRLDLHYRVV  320 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S~------~~~e~~~~~~~~i~~~L~lpyRvv  320 (430)
                      ++..++++|+.+.+.. .|...+-...|-..+-....-. .+++|      .-+-.+-...+.+++.||+.....
T Consensus        85 ~lFEiG~vf~~~~~~~-~~~~~~~~~~e~~~l~~~~~G~~~~~~w~~~~~~~df~~~Kgive~ll~~lgi~~~~~  158 (213)
T 3ica_A           85 YLFEWGKCYRFHAAKR-TDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAY  158 (213)
T ss_dssp             EEEEEEEEEEEECCCC---CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             EEEEEEEEECCCCCCC-CCCCCHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5897411661477765-4321010020351899999888656665654330059999999999999829983213


No 72 
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=74.55  E-value=4.5  Score=19.69  Aligned_cols=12  Identities=17%  Similarity=0.202  Sum_probs=5.7

Q ss_pred             CCCCHHHHCCCC
Q ss_conf             588112211355
Q gi|254780680|r  108 VPLEEVPIGTSA  119 (430)
Q Consensus       108 i~~~~VP~G~de  119 (430)
                      .|...+|.+..|
T Consensus       176 cp~~~t~l~~~e  187 (862)
T 1gax_A          176 CPRCETTLSDLE  187 (862)
T ss_dssp             ETTTTEEECGGG
T ss_pred             ECCCCCHHHHHC
T ss_conf             378775776403


No 73 
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=70.98  E-value=4.8  Score=19.45  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=17.9

Q ss_pred             CCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             8332375310210076453268473389984--10104200432289999999988
Q gi|254780680|r  345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILE  398 (430)
Q Consensus       345 ~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailE  398 (430)
                      +.|.|---..|+ .|      -|.+|...+-  ...-.-|+|-   +.-.|-|+|.
T Consensus       314 ~~rs~~IRtY~~-p~------~~V~DhR~~~~~~~~~~vldG~---ld~~i~a~~~  359 (371)
T 1zbt_A          314 GDRSERIRTYNF-PQ------NRVTDHRIGLTLQKLDSILSGK---LDEVIDALIL  359 (371)
T ss_dssp             SCTTSEEEEEET-TT------TEEEETTTTEEESCHHHHHTTC---CHHHHHHHHH
T ss_pred             CCCCCCCCCCCC-CC------CCHHHHCCCCEECCHHHHHCCC---HHHHHHHHHH
T ss_conf             664357508107-97------7506632488636835761986---6999999999


No 74 
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Probab=70.51  E-value=4.7  Score=19.55  Aligned_cols=13  Identities=23%  Similarity=0.432  Sum_probs=8.5

Q ss_pred             HHCCCCCCCHHHH
Q ss_conf             1002258811221
Q gi|254780680|r  103 SCIPNVPLEEVPI  115 (430)
Q Consensus       103 l~IPNi~~~~VP~  115 (430)
                      -+||++.|---|.
T Consensus       234 Raip~~~DGlKp~  246 (692)
T 2xcs_B          234 RALPDVRDGLKPV  246 (692)
T ss_dssp             TSSCBTTTCCCHH
T ss_pred             CCCCHHHCCCCHH
T ss_conf             0475142176578


No 75 
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.27  E-value=5.5  Score=19.01  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98799999999999998864446666677888774
Q gi|254780680|r   66 NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK  100 (430)
Q Consensus        66 ~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~  100 (430)
                      +.++++.|+.++.+++++...+.++-+++..++.+
T Consensus        17 e~~DvEaLrlE~~eLkqK~e~L~eEN~eLK~kL~q   51 (53)
T 2yy0_A           17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96009999999999999999999999999999870


No 76 
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 2etn_A
Probab=69.19  E-value=5.8  Score=18.85  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999999999999999999998644998---79999999999999886444666667788877443100225881
Q gi|254780680|r   35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL---SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLE  111 (430)
Q Consensus        35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~---~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~  111 (430)
                      +-+..|+.+++.|+.++-++.+.|+.+...|+.   ++-+..+++-..+..+|..|+..+.       ..- -+...+.+
T Consensus        10 ~g~~~L~~EL~~l~~~~~e~~~~i~~a~~~gDl~ENaeY~aAke~q~~~e~rI~~Le~~L~-------~A~-iie~~~~d   81 (156)
T 2f23_A           10 AGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS-------RAV-ILEEGSGE   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH-------HEE-ECCTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC-CCCCCCCC
T ss_conf             9999999999998877788999999999737864217699999999999999999999998-------613-05678765


Q ss_pred             HHHHC
Q ss_conf             12211
Q gi|254780680|r  112 EVPIG  116 (430)
Q Consensus       112 ~VP~G  116 (430)
                      -|-.|
T Consensus        82 ~V~~G   86 (156)
T 2f23_A           82 VIGLG   86 (156)
T ss_dssp             CCCTT
T ss_pred             EEEEC
T ss_conf             89966


No 77 
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=67.24  E-value=6.4  Score=18.57  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999998644---998799999999999998864446666677888774431002
Q gi|254780680|r   30 ILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAE---GNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIP  106 (430)
Q Consensus        30 il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~---~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IP  106 (430)
                      --+|-.+...++++++..+..|+-+.|..+.....   |+.   .++..+..++..+|..|+.++..++.-+.++--++|
T Consensus        17 rkkL~~ki~~l~~ei~ke~~~ReGl~KM~~vY~~nP~~Gd~---~sve~qL~e~~~~id~L~~e~~K~q~~Laele~~~~   93 (98)
T 2ke4_A           17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDP---ASLEPQIAETLSNIERLKLEVQKYEAWLAEAESRVL   93 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCG---GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999999899999999999868777887---778999999999999999999999999999847355


No 78 
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=65.10  E-value=6.9  Score=18.28  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCH
Q ss_conf             999999999999999-99999999999864499879999999999999886444666667788877443-1002258811
Q gi|254780680|r   35 EKNRILIKKIEDIRA-RRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI-SCIPNVPLEE  112 (430)
Q Consensus        35 ~~rr~l~~e~e~Lra-erN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll-l~IPNi~~~~  112 (430)
                      +-+..|+.+++.|+. ++.++.++|+.+...|+-.+-.    +-..-+++...++.....++..+...- ......+.+-
T Consensus         9 ~g~~~L~~eL~~L~~~~r~~~~~~i~~A~~~gDl~ENa----ey~~ake~q~~~~~ri~~L~~~L~~a~ii~~~~~~~~~   84 (158)
T 2p4v_A            9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENA----DYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGK   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCSSSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999998702288999999998669900066----67999999998999999999999863147875466664


Q ss_pred             HHHCC
Q ss_conf             22113
Q gi|254780680|r  113 VPIGT  117 (430)
Q Consensus       113 VP~G~  117 (430)
                      |..|.
T Consensus        85 v~~gs   89 (158)
T 2p4v_A           85 VFFGA   89 (158)
T ss_dssp             CSSSC
T ss_pred             CCCCE
T ss_conf             35865


No 79 
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=63.55  E-value=7.4  Score=18.08  Aligned_cols=78  Identities=19%  Similarity=0.230  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCC-
Q ss_conf             999999999999999-99999999999864499879999999999999886444666667788877443-100225881-
Q gi|254780680|r   35 EKNRILIKKIEDIRA-RRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLI-SCIPNVPLE-  111 (430)
Q Consensus        35 ~~rr~l~~e~e~Lra-erN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~ll-l~IPNi~~~-  111 (430)
                      +-+..|+.+++.|+. ++-++++.|+.+...|+..+...    -..-+++...++.....++..+...- ......+++ 
T Consensus         9 ~g~~~L~~EL~~L~~~~r~e~~~~i~~A~~~GDl~Enae----y~aAk~~~~~~e~ri~~l~~~l~~a~ivd~~~~~~~~   84 (158)
T 1grj_A            9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAE----YHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNG   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHH----HHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGSCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf             999999999999986301778988999886578222646----8999999999999999999764134997576689999


Q ss_pred             HHHHC
Q ss_conf             12211
Q gi|254780680|r  112 EVPIG  116 (430)
Q Consensus       112 ~VP~G  116 (430)
                      .|=.|
T Consensus        85 ~V~~G   89 (158)
T 1grj_A           85 RVIFG   89 (158)
T ss_dssp             BCCTT
T ss_pred             EEEEE
T ss_conf             79951


No 80 
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A*
Probab=63.13  E-value=7.5  Score=18.03  Aligned_cols=173  Identities=12%  Similarity=0.107  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHH---------HHCCHHHHHHHHHCHHH-----HHHHHHHHHCCEEC-CCCCCH
Q ss_conf             8899999999999862232032021235---------62027889865514224-----76776431000231-345411
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAP---------LLVRDEAMYGTGQIPKF-----ADDMFCTTDGRWLI-PTSEVS  235 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P---------~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~Li-~TaEvp  235 (430)
                      +..+-.-..+|+..     .||+++-.|         -++...-=+-+=+.|.+     ..|.|.++++..|- -|+-+.
T Consensus        50 l~~~~~~i~~~F~~-----~g~~~~~~~~f~~~d~~~~vet~~~NFD~L~~P~dHPaRd~~DTfyl~~~~lLRthts~~q  124 (415)
T 3cmq_A           50 LWLIKERVKEHFYK-----QYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQ  124 (415)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGH
T ss_pred             HHHHHHHHHHHHHH-----CCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHH
T ss_conf             89999999999987-----3866357876212589997327414202227899987567434167689870468898889


Q ss_pred             HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC-----------------------
Q ss_conf             454453420595550420885322107884335543432122221020021212786-----------------------
Q gi|254780680|r  236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE-----------------------  292 (430)
Q Consensus       236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p-----------------------  292 (430)
                      .-.+++        -+-.+...+.|||++.-.+    ..   ...|+.+|.+.+...                       
T Consensus       125 ~~~l~~--------~~~~~~~~G~vyR~d~iD~----~h---~~~FhQ~eg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (415)
T 3cmq_A          125 WDLLHA--------GLDAFLVVGDVYRRDQIDS----QH---YPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSA  189 (415)
T ss_dssp             HHHHHT--------TCSEEEEEEEEECCCCCBT----TB---CSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCS
T ss_pred             HHHHHC--------CCCCEEEECCCCCCCCCCC----CC---CCEEEECCEEEECCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             999854--------8993476477715798776----44---41123110466314000001234443222112333343


Q ss_pred             --CC------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC
Q ss_conf             --50------1457898999999999984106753037801178443402410110100483323753102100764532
Q gi|254780680|r  293 --ED------SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM  364 (430)
Q Consensus       293 --e~------S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl  364 (430)
                        .+      -.-.+-.+....+.+++.|+.+--.+........+. .-...++++.  .++|.||..|.-..--..+.+
T Consensus       190 h~~e~~~~e~~~~~~~dLKg~le~ll~~l~~~~~~~r~~~~~fPft-~Ps~e~~I~~--~~~wiei~g~G~vhP~Vl~~~  266 (415)
T 3cmq_A          190 HKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFT-HPSFEMEINF--HGEWLEVLGCGVMEQQLVNSA  266 (415)
T ss_dssp             SCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTE-EEEEEEEEEE--TTEEEEEEEEEEECHHHHHHT
T ss_pred             CCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCEEEEEEE--CCCCCEEEEEECCCHHHHHHC
T ss_conf             2100012211121088899999999999679875799840789876-7632799998--885666878602579999865


Q ss_pred             CC
Q ss_conf             68
Q gi|254780680|r  365 NS  366 (430)
Q Consensus       365 ~i  366 (430)
                      ++
T Consensus       267 g~  268 (415)
T 3cmq_A          267 GA  268 (415)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             99


No 81 
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=61.86  E-value=3.8  Score=20.24  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf             8999999999984106753037801178443402410110100483323753102100
Q gi|254780680|r  301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN  358 (430)
Q Consensus       301 ~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D  358 (430)
                      +.-..-..++..+|+|.|.|.-      ...  -.=.|||.|++++|.-+-.|.+.-|
T Consensus       145 e~A~~f~~~~Ra~G~~aR~V~~------~~d--H~W~EVy~~~~~rWv~vDP~e~~id  194 (295)
T 2f4m_A          145 EWANCFTLCCRALGFEARYVWD------YTD--HVWTEVYSPSQQRWLHCDACEDVCD  194 (295)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEE------TTT--EEEEEEEETTTTEEEEEETTTTEES
T ss_pred             HHHHHHHHHHHHCCCCEEEEEC------CCC--CEEEEEEECCCCCEEEECCCCCCCC
T ss_conf             8999999999985996499942------765--4478998768795787768446368


No 82 
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, phosphoprotein, zinc, nucleus, cytoplasm, zinc-finger, coiled coil; 2.9A {Mus musculus}
Probab=58.57  E-value=8.9  Score=17.48  Aligned_cols=75  Identities=12%  Similarity=0.059  Sum_probs=35.1

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98469895889999999999999999999999999999999998644998799999999999998864446666677
Q gi|254780680|r   18 LKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEV   94 (430)
Q Consensus        18 l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~l   94 (430)
                      |..|+.......|-.|-.+...+..++..++...+.+...+..++..  .+.+..+..+...++.++..+......+
T Consensus        14 ~~~~~~~~a~~eie~L~~qL~~~e~~l~~~q~~~~~Le~~~~~l~~~--~eei~~Lq~ql~~l~~el~~~~~~~~~l   88 (110)
T 2v4h_A           14 LVPRGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV--METVPVLKAQADIYKADFQAERHAREKL   88 (110)
T ss_dssp             CCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68998417799999999999999999999999999999999999999--9899999999999999999999999999


No 83 
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.84  E-value=9.1  Score=17.39  Aligned_cols=64  Identities=17%  Similarity=0.126  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999998644998799999999999998864446666677888774
Q gi|254780680|r   32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKK  100 (430)
Q Consensus        32 ~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~  100 (430)
                      .+|.+...+..++..++.+.+.+..++..+.     ..+..+..+...+..++..++..+..+..++..
T Consensus        15 ~ld~~i~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~e~~i~~~~~~i~~   78 (256)
T 3na7_A           15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKN-----KAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS   78 (256)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999-----999999999999999999999999999999988


No 84 
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=56.14  E-value=9.7  Score=17.20  Aligned_cols=74  Identities=15%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999864499879999999999999886444666667788877443100
Q gi|254780680|r   28 EYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCI  105 (430)
Q Consensus        28 d~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~I  105 (430)
                      +....|-...|.+..++..|..+.+.+-.+|..+.++|+...+..+..+...++..+..+.....    .+..+.+.|
T Consensus        14 e~~~~Lr~~~~~Ler~~~~le~~~~k~~~~iK~~~k~g~~~~a~~~ak~~~~~~k~~~~~~~~~~----~l~~~~~~i   87 (218)
T 3frt_A           14 EWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA----HMNSVLMGM   87 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_conf             99999999999999999999999999999999999827899999999999999999999999999----999999999


No 85 
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=54.56  E-value=10  Score=17.02  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998864446666677888774
Q gi|254780680|r   74 KNETSTLKEQLPILEKEEHEVCSSLKK  100 (430)
Q Consensus        74 k~e~~~Lk~eik~le~~~~~le~el~~  100 (430)
                      ..+..++..+++.+++++..+...+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (497)
T 3iox_A           79 QKDLADYPVKLKAYEDEQTSIKAALAE  105 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999


No 86 
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=54.37  E-value=10  Score=17.00  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999
Q gi|254780680|r   29 YILSLDEKNRILIKKIEDIRARRNSNSAQIGQ   60 (430)
Q Consensus        29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~   60 (430)
                      .|-.|......+...++.+....+.+...+..
T Consensus        55 ~i~~L~~~~~~l~~~i~~l~~~i~~l~~~~~~   86 (487)
T 2bsg_A           55 NVEVLDKNIGILKTSLETANSDIKTIQGILDV   86 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999887


No 87 
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=53.74  E-value=11  Score=16.93  Aligned_cols=90  Identities=9%  Similarity=-0.038  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999846989588999999999999999999999999999999999864499879999999999999886444666
Q gi|254780680|r   11 PEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKE   90 (430)
Q Consensus        11 ~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~   90 (430)
                      .+.....+.......+++.+..+-.+.+.+..+++..+...+.+......+...........+......|...-..+...
T Consensus        16 l~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~l~~~   95 (214)
T 1s35_A           16 LSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRM   95 (214)
T ss_dssp             HHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987088999999999999999999999999978489999999888874356530689999999999999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             6677888774
Q gi|254780680|r   91 EHEVCSSLKK  100 (430)
Q Consensus        91 ~~~le~el~~  100 (430)
                      .......+..
T Consensus        96 ~~~~~~~l~~  105 (214)
T 1s35_A           96 WESRSHTLAQ  105 (214)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999888888


No 88 
>2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=52.19  E-value=11  Score=16.76  Aligned_cols=57  Identities=14%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999998644998799999999999998864446666
Q gi|254780680|r   35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEE   91 (430)
Q Consensus        35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~   91 (430)
                      ++|+.+..+++....+-+++=+++......-.......+..+++..+.++..++.++
T Consensus        45 eerk~~i~~ie~~leEA~ell~qMelE~r~~p~s~R~~~~~klr~Yk~dl~~lk~el  101 (102)
T 2qyw_A           45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             889999999998799999999999999882988889999999999999999998662


No 89 
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=51.95  E-value=0.89  Score=24.90  Aligned_cols=46  Identities=13%  Similarity=0.061  Sum_probs=22.5

Q ss_pred             CCCCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             048332375310210076453268473389984--10104200432289999999988
Q gi|254780680|r  343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILE  398 (430)
Q Consensus       343 ~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailE  398 (430)
                      +...|++---..|+ - |.     |.+|...+.  ...-.-|+|-   +.-.|-|.|+
T Consensus       303 ~~~~r~~~iRtY~f-p-~~-----rVtDhR~~~~~~~~~~vl~G~---ld~~i~a~l~  350 (365)
T 2ihr_1          303 RPIEWGSQIRSYVL-D-KN-----YVKDHRTGLMRHDPENVLDGD---LMDLIWAGLE  350 (365)
T ss_dssp             CCSCCCSCSEEEEG-G-GT-----EEEETTTCCEESCHHHHTTTC---CHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEC-C-CC-----CCCCCCCCCEECCHHHHHCCC---CHHHHHHHHH
T ss_conf             77776588115258-9-88-----342016498557868876887---0999999999


No 90 
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=51.75  E-value=4.8  Score=19.45  Aligned_cols=30  Identities=10%  Similarity=0.174  Sum_probs=14.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCC
Q ss_conf             865014578989999999999841067-5303780
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCT  324 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~s  324 (430)
                      +|+-|.+.++++.+.    ++.+|++= +++.++.
T Consensus       120 ~p~~~~~~~~~~~~~----~~~~G~~~~~i~~~~q  150 (159)
T 1ew3_A          120 EPDVSPEIKEEFVKI----VQKRGIVKENIIDLTK  150 (159)
T ss_dssp             SSSCCHHHHHHHHHH----HHHTTCCGGGEEEGGG
T ss_pred             CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCC
T ss_conf             999899999999999----9985999899899998


No 91 
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacterthermautotrophicus} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=51.38  E-value=11  Score=16.67  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999999999999998644-----------------9987999999999999988644466
Q gi|254780680|r   27 SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAE-----------------GNLSLVDALKNETSTLKEQLPILEK   89 (430)
Q Consensus        27 id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~-----------------~~~~~~~~Lk~e~~~Lk~eik~le~   89 (430)
                      +..+..+-.+...+..++..+.++.++...-+..+..-                 ...+....+......|...|+.+++
T Consensus         7 ~~~~q~lq~elq~l~~q~~~le~q~~E~~~vl~el~~l~~d~~vyk~VG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~k   86 (107)
T 1fxk_A            7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIER   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999998728862379998440451112999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             6667788877443100
Q gi|254780680|r   90 EEHEVCSSLKKLISCI  105 (430)
Q Consensus        90 ~~~~le~el~~lll~I  105 (430)
                      +...++.++..+--.|
T Consensus        87 q~~~l~~~~~e~~~~l  102 (107)
T 1fxk_A           87 QEERVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 92 
>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp}
Probab=51.18  E-value=12  Score=16.64  Aligned_cols=74  Identities=9%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999999999999999999999986449--987999999999999988644466666778887744
Q gi|254780680|r   25 PQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG--NLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL  101 (430)
Q Consensus        25 ~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~--~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l  101 (430)
                      +.-++-.++++-+.+...+...||.+....-.++..+....  +.+.+.++..++.+|+.++   .++..+...++.+.
T Consensus        68 LT~EQq~~~~~I~~~~~~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL---~~~R~~~~~qm~k~  143 (175)
T 3lay_A           68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL---DEQRVKRDVAMAQA  143 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999997179999999999999999999999---99999999999984


No 93 
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=50.53  E-value=12  Score=16.57  Aligned_cols=136  Identities=15%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCC-EECCCCCCHHHH-HHHHHCCCHHHH
Q ss_conf             99999998622320320212356202788986551422476776431----000-231345411454-453420595550
Q gi|254780680|r  177 ALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGR-WLIPTSEVSLTN-LYSHEIIESKSL  250 (430)
Q Consensus       177 ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l-~Li~TaEvpL~~-~~~~~~l~~~~L  250 (430)
                      .|.+..-+..+ ..||+|+.+-.++.++....-+..|  .++..++.    +++ +|=+|-=.+|.. +-.+  +....-
T Consensus         8 ~l~~~ir~~L~-~~Gf~Ev~tys~~s~~~~~~~~~~~--~~~~v~l~NPls~e~~~lR~sLlp~LL~~~~~N--~~~~~~   82 (213)
T 3ig2_A            8 KLQNLVAEQLV-GCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHN--ANRKNA   82 (213)
T ss_dssp             HHHHHHHHHHH-HTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHCCCC--CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCC
T ss_conf             99999999999-7897031146668989998742787--667189528875667888887798899999873--156767


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCCH------HHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             42088532210788433554343212222102002121278-6501------45789899999999998410675
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR-EEDS------FTEHERMLSCAEEILKRLDLHYR  318 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S------~~~~e~~~~~~~~i~~~L~lpyR  318 (430)
                      ++++..++++|..+.+... ..+.+-..+|-..+-.+..-. ...+      ..-+-.+-...+.+++.||++..
T Consensus        83 ~~~lFEiG~vf~~~~~~~~-~~~~~~~~~e~~~L~~~~~G~~~~~~w~~~~~~~df~~lKg~le~ll~~lgi~~~  156 (213)
T 3ig2_A           83 DLKFFEFGNCYHFDAEKKN-PEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLH  156 (213)
T ss_dssp             CCEEEEEEEEEEECC-----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGG
T ss_pred             CEEEEEEEEEECCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             6027987647736765566-4334566421068889987676655556653223099999999999998399823


No 94 
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=50.53  E-value=12  Score=16.57  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=20.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf             48332375310210076453268473389984--10104200432289999999988346
Q gi|254780680|r  344 QNLYREISSCSTCGNFQSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILENYL  401 (430)
Q Consensus       344 ~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailEn~q  401 (430)
                      .+.|.|---.-|+ - |.     |.+|...+.  ...-.-|+|-   +.-.|-|++..++
T Consensus       300 ~~~rse~IRtYn~-p-~~-----~V~DhR~~~~~~~~~~vl~G~---ld~~i~a~~~~~~  349 (360)
T 2b3t_B          300 SGDRSDRNRTYNF-P-QG-----RVTDHRINLTLYRLDEVMEGK---LDMLIEPIIQEHQ  349 (360)
T ss_dssp             ----CCEEEEEET-T-TT-----EEEEGGGTEEESCHHHHHHTC---THHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEC-C-CC-----CCHHHCCCCEECCHHHHHCCC---HHHHHHHHHHHHH
T ss_conf             0123375274517-9-77-----644314588777835764987---2999999999999


No 95 
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=50.45  E-value=12  Score=16.57  Aligned_cols=76  Identities=14%  Similarity=0.270  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             89999999999999999999999999999999998644998799999999999998864446666677888774431002
Q gi|254780680|r   27 SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIP  106 (430)
Q Consensus        27 id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IP  106 (430)
                      -+....|....+.+..++..|..+...+-.++..+.++|+...+-.+..+.+.++..+..+.....    .+..++..|=
T Consensus        13 ~e~~~~L~~~~~~L~r~~~~Le~~~~~~~~~~k~~~k~g~~~~A~~~lk~~~~~~k~~~~~~~~~~----~le~~~~~ie   88 (179)
T 2gd5_A           13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA----HMNSVLMGMK   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf             999999999999999999999999999999999999827599999999999999999999999999----9999999999


No 96 
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=49.06  E-value=12  Score=16.42  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999986449987999999999999988644466666778
Q gi|254780680|r   35 EKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVC   95 (430)
Q Consensus        35 ~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le   95 (430)
                      ++++.+..+++.-..+-+.+=.++......-.......+..+++..+.++..+..+++.+.
T Consensus        34 eerk~~i~~ie~~ldEA~ell~QMelE~r~~p~s~R~~~~~klR~Yk~dL~~lk~e~k~a~   94 (102)
T 1vcs_A           34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR   94 (102)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7799999999985899999999999998839877799999999999999999999999867


No 97 
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=48.70  E-value=13  Score=16.38  Aligned_cols=20  Identities=20%  Similarity=0.155  Sum_probs=12.1

Q ss_pred             CCEEHHHHHCCHHHHHHHHH
Q ss_conf             20212356202788986551
Q gi|254780680|r  192 YTEVSAPLLVRDEAMYGTGQ  211 (430)
Q Consensus       192 y~~v~~P~lv~~~~~~gtG~  211 (430)
                      |.|+.|-.|||...-.|||+
T Consensus       179 y~piiP~vLvNGs~GIgtG~  198 (514)
T 2inr_A          179 LPSRFPNLLVNGSTGISAGY  198 (514)
T ss_dssp             CCCSSCHHHHHCEECC--CC
T ss_pred             CCCCCCHHHHCCCCCCEEEE
T ss_conf             25767389873677622320


No 98 
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=47.86  E-value=5  Score=19.31  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=8.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             65014578989999999999841067
Q gi|254780680|r  292 EEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       292 pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      |+-+.+..+++.    .+.+.+|++-
T Consensus       143 ~~~~~~~~~~f~----~~~~~~Gi~~  164 (181)
T 2a2u_A          143 KDLSSDIKEKFA----KLCEAHGITR  164 (181)
T ss_dssp             SSCCHHHHHHHH----HHHHTTTCCG
T ss_pred             CCCCHHHHHHHH----HHHHHCCCCH
T ss_conf             999999999999----9999859898


No 99 
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} PDB: 3kfg_A 3kfh_A 3kfi_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A 1df3_A 1jv4_A ...
Probab=45.65  E-value=9  Score=17.43  Aligned_cols=33  Identities=6%  Similarity=0.142  Sum_probs=17.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHHC
Q ss_conf             8650145789899999999998410675-303780117
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGDL  327 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgdl  327 (430)
                      +|+-+.+.++++    .++++.+|++-. ++.++..|.
T Consensus       123 ~~~~~~~~~~~f----~~~~~~~G~~~~~i~~~~~~d~  156 (162)
T 3kff_A          123 KADLNSDIKEKF----VKLCEEHGIIKENIIDLTKTNR  156 (162)
T ss_dssp             SSCCCHHHHHHH----HHHHHHTTCCGGGEEEGGGSCC
T ss_pred             CCCCCHHHHHHH----HHHHHHCCCCHHHEEECCCCCC
T ss_conf             999999999999----9999985989899799999873


No 100
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A*
Probab=44.61  E-value=14  Score=15.94  Aligned_cols=20  Identities=15%  Similarity=0.102  Sum_probs=16.7

Q ss_pred             CCEEHHHHHCCHHHHHHHHH
Q ss_conf             20212356202788986551
Q gi|254780680|r  192 YTEVSAPLLVRDEAMYGTGQ  211 (430)
Q Consensus       192 y~~v~~P~lv~~~~~~gtG~  211 (430)
                      |.|+.|-.|||...-.|||+
T Consensus       136 y~piiP~vLvNG~~GIgtG~  155 (470)
T 3ilw_A          136 LPSRFPNLLANGSGGIAVGM  155 (470)
T ss_dssp             CCCSSCHHHHHCEECSSTTC
T ss_pred             CCCCCCHHHHCCCCCEEEEE
T ss_conf             16436299863777525300


No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=44.31  E-value=14  Score=15.91  Aligned_cols=21  Identities=10%  Similarity=0.102  Sum_probs=12.7

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHH
Q ss_conf             53010564889999999999986
Q gi|254780680|r  163 RFSVLTGHLAHLERALGQFMIDL  185 (430)
Q Consensus       163 rF~~Lkg~~A~Le~ALi~y~ld~  185 (430)
                      ||=.+...  -+|+-.|||+-..
T Consensus       440 GFE~~~~n--sfeQlciNy~nEk  460 (1080)
T 2dfs_A          440 GFETFEIN--SFEQFCINYANEK  460 (1080)
T ss_dssp             CCCCCSSB--CHHHHHHHHHHHH
T ss_pred             CCCCCCCC--CHHHHHHHHHHHH
T ss_conf             88775646--6899998888999


No 102
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=44.13  E-value=15  Score=15.89  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=14.5

Q ss_pred             CCEEHHHHHCCHHHHHHHHH
Q ss_conf             20212356202788986551
Q gi|254780680|r  192 YTEVSAPLLVRDEAMYGTGQ  211 (430)
Q Consensus       192 y~~v~~P~lv~~~~~~gtG~  211 (430)
                      |.|+.|-.|||...-.|||+
T Consensus       425 y~piIPmvLVNG~~GIgtG~  444 (767)
T 2xkj_E          425 LPARVPNILLNGTTGIAVGM  444 (767)
T ss_dssp             CCCSSCHHHHHCEEEEETTE
T ss_pred             CCCCCHHHHHCCCCCEEHHH
T ss_conf             26535399864786410244


No 103
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=43.51  E-value=10  Score=16.95  Aligned_cols=24  Identities=8%  Similarity=-0.069  Sum_probs=10.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             8650145789899999999998410675
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYR  318 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR  318 (430)
                      +|+-+.+.++++...    .+.+||+-.
T Consensus       132 ~~~~~~e~~e~f~~~----~~~~Gi~~e  155 (166)
T 2ra6_A          132 TPNLSNEIKKRFEED----FMNRGFRRE  155 (166)
T ss_dssp             SSCCCHHHHHHHHHH----HHTTTCCGG
T ss_pred             CCCCCHHHHHHHHHH----HHHCCCCHH
T ss_conf             999999999999999----998499989


No 104
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* 2ffd_B* 1rf1_B* ...
Probab=43.23  E-value=5.3  Score=19.14  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999998864446666677888774431002258
Q gi|254780680|r   73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP  109 (430)
Q Consensus        73 Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~  109 (430)
                      +...+..+..+|+.++.......+.+.......+++|
T Consensus        35 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~   71 (328)
T 1fzc_B           35 LRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIP   71 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999999999888878988752423333457


No 105
>3isr_A Transglutaminase-like enzymes, putative cysteine protease; PSI, MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii atcc 33406}
Probab=41.23  E-value=15  Score=15.87  Aligned_cols=56  Identities=9%  Similarity=0.039  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf             98999999999984106753037801178443402410110100483323753102100
Q gi|254780680|r  300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN  358 (430)
Q Consensus       300 e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D  358 (430)
                      +.+-.....++..+|||.|+|.--....+..++ --=.|||+|+  .|.-+=-.-||.+
T Consensus       182 ~d~A~l~~al~R~~GIPaR~vsG~~~~~~~~~~-HAW~ev~~~g--gW~~~DpT~~~~~  237 (293)
T 3isr_A          182 RDFAHLGIALCRALSIPARYFTGYAFKLNPPDF-HACFEAYIGG--NWIIFDATRLVPL  237 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCE-EEEEEEEETT--EEEEECTTCCSCG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-EEEEEEEECC--CEEEECCCCCCCC
T ss_conf             889999999999769986999766747999874-3899999899--7999879999988


No 106
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.85  E-value=16  Score=15.54  Aligned_cols=20  Identities=10%  Similarity=0.252  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999986
Q gi|254780680|r   43 KIEDIRARRNSNSAQIGQAI   62 (430)
Q Consensus        43 e~e~LraerN~lSKeIg~~k   62 (430)
                      +++.|+++...+.+.|..+.
T Consensus         2 Eie~L~~~~~~Le~~l~~~e   21 (84)
T 1gk4_A            2 EVDALKGTNESLERQMREME   21 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             58789979999999999999


No 107
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=40.43  E-value=9.5  Score=17.28  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHCCHHHHCC--CCCHHCCC
Q ss_conf             999999998410675303--78011784
Q gi|254780680|r  304 SCAEEILKRLDLHYRVVS--LCTGDLGF  329 (430)
Q Consensus       304 ~~~~~i~~~L~lpyRvv~--~~sgdlg~  329 (430)
                      .....++..||||.|+|-  -+|+|...
T Consensus       277 gV~~TVlRcLGIP~RvVTNf~SAHDt~~  304 (695)
T 1g0d_A          277 AVACTVLRCLGIPTRPITNFASAHDVDG  304 (695)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEEETTTTTT
T ss_pred             HHHHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf             7788899863887156414343246888


No 108
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=40.32  E-value=9.7  Score=17.20  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHCCHHHHCCC--CCHHCCC
Q ss_conf             9999999984106753037--8011784
Q gi|254780680|r  304 SCAEEILKRLDLHYRVVSL--CTGDLGF  329 (430)
Q Consensus       304 ~~~~~i~~~L~lpyRvv~~--~sgdlg~  329 (430)
                      .....++..||||.|+|--  +|+|...
T Consensus       319 gV~~TvlRcLGIP~R~VTNf~SAHDtd~  346 (731)
T 1ex0_A          319 GVFNTFLRCLGIPARIVTNYFSAHDNDA  346 (731)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEEECCSCTT
T ss_pred             HHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf             7777766226886401335564455888


No 109
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.16  E-value=17  Score=15.46  Aligned_cols=12  Identities=25%  Similarity=0.191  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             988644466666
Q gi|254780680|r   81 KEQLPILEKEEH   92 (430)
Q Consensus        81 k~eik~le~~~~   92 (430)
                      +.++..+..++.
T Consensus       355 ~~e~e~~~~~l~  366 (551)
T 2b5u_A          355 KSELDAANKTLA  366 (551)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 110
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.07  E-value=17  Score=15.45  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999986449-9879999999999999886444666
Q gi|254780680|r   42 KKIEDIRARRNSNSAQIGQAIAEG-NLSLVDALKNETSTLKEQLPILEKE   90 (430)
Q Consensus        42 ~e~e~LraerN~lSKeIg~~k~~~-~~~~~~~Lk~e~~~Lk~eik~le~~   90 (430)
                      .+++.|+.+.++-...|..+|..+ +.++++.-.++.-.||.+++.++.+
T Consensus        13 ~~~~~L~~~I~~QGd~VR~LK~~kA~k~~i~~aV~~LL~LK~~~k~~tg~   62 (79)
T 2djv_A           13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGK   62 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999989999998724899899999999999999999997498


No 111
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.78  E-value=17  Score=15.42  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999
Q gi|254780680|r   33 LDEKNRILIKKIEDIRARRNSNSA   56 (430)
Q Consensus        33 Ld~~rr~l~~e~e~LraerN~lSK   56 (430)
                      ++.+...++.++..-+..+..+++
T Consensus        24 ~e~e~~~l~~~L~~e~~~r~~aE~   47 (97)
T 2eqb_B           24 RDDEVKRLREDIAKENELRTKAEE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999999999999


No 112
>1x3z_A Peptide:N-glycanase; protein-protein-inhibitor complex, hydrolase; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=38.84  E-value=17  Score=15.40  Aligned_cols=50  Identities=20%  Similarity=0.093  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf             8999999999984106753037801178443402410110100483323753102100
Q gi|254780680|r  301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN  358 (430)
Q Consensus       301 ~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D  358 (430)
                      |.-....-++..||++.|.|.-        ..--.=+|||.+++++|.-|-.|-+.-|
T Consensus       186 E~an~f~~~lRa~G~~aR~V~~--------~~dhvW~EVy~~~~kRWI~VDP~e~~id  235 (335)
T 1x3z_A          186 EWCNLFTLILKSFGLDVRYVWN--------REDHVWCEYFSNFLNRWVHVDSCEQSFD  235 (335)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEEE--------TTTEEEEEEEETTTTEEEEEETTTTEES
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE--------CCCCEEEEEEECCCCCEEEECCCCCCCC
T ss_conf             8999999999974885699973--------8983799985066581677878778438


No 113
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=38.06  E-value=7.3  Score=18.14  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=19.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHHC
Q ss_conf             8650145789899999999998410675-303780117
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGDL  327 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgdl  327 (430)
                      +|+-+.+.++++...    ++.+||+-. ++.++..|-
T Consensus       123 ~p~l~~e~~~~f~~~----~~~~Gi~~e~i~~~~q~d~  156 (170)
T 3l4r_A          123 DLSRQQDFLPAFESV----CEDIGLHKDQIVVLSDDDR  156 (170)
T ss_dssp             CGGGTTTTHHHHHHH----HHHTTCCGGGEEECCTTTC
T ss_pred             CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCCCCC
T ss_conf             888999999999999----9985989899799999880


No 114
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=36.71  E-value=19  Score=15.09  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=16.8

Q ss_pred             EEEECCCHHHHHH--HHHHHHHHCCCCCCCEECCCCCC
Q ss_conf             0420043228999--99999883468998386582223
Q gi|254780680|r  379 THTLNGSGVAVGR--CLIAILENYLNADGSVTIPTVLR  414 (430)
Q Consensus       379 ~htlNgt~~A~~R--~l~ailEn~q~~dg~i~iP~~L~  414 (430)
                      .|.|-|. +...|  +|.||+-----=-..+.+|..||
T Consensus       488 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (526)
T 3iyk_A          488 MHILRGP-IHFQRRAILGALKFGCKVLGDRLDVPLFLR  524 (526)
T ss_pred             HHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf             9997385-456899999999844425436443427533


No 115
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=36.68  E-value=8.9  Score=17.49  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHCCHHHHCC--CCCHHCCC
Q ss_conf             999999998410675303--78011784
Q gi|254780680|r  304 SCAEEILKRLDLHYRVVS--LCTGDLGF  329 (430)
Q Consensus       304 ~~~~~i~~~L~lpyRvv~--~~sgdlg~  329 (430)
                      .....++..||||.|+|-  -+|+|...
T Consensus       277 gv~~TvlR~LGIP~R~VTnf~SAHDtd~  304 (692)
T 1vjj_A          277 GTLNTALRSLGIPSRVITNFNSAHDTDR  304 (692)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             7788888744786267525567345888


No 116
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=36.61  E-value=11  Score=16.92  Aligned_cols=34  Identities=15%  Similarity=0.046  Sum_probs=17.5

Q ss_pred             EECC-CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCC
Q ss_conf             2127-865014578989999999999841067-5303780
Q gi|254780680|r  287 VSIT-REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCT  324 (430)
Q Consensus       287 ~~~~-~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~s  324 (430)
                      +.++ +|+-|.+..+++..    +.+.|||+= +++.++.
T Consensus       121 ~llsR~~~~~~~~~~~~~~----~~~~~Gl~~~~i~~~~~  156 (161)
T 2xst_A          121 QLYSRTQDVSPQALKSFQD----FYPTLGLPKDMMVMLPQ  156 (161)
T ss_dssp             EEEESSSSCCHHHHHHHHH----HGGGGTCCGGGEEECCC
T ss_pred             EEEECCCCCCHHHHHHHHH----HHHHCCCCHHHEEECCC
T ss_conf             9997689999999999999----99984999899799998


No 117
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.42  E-value=19  Score=15.01  Aligned_cols=13  Identities=15%  Similarity=0.166  Sum_probs=8.0

Q ss_pred             HCCCCCC-HHHHHH
Q ss_conf             4698958-899999
Q gi|254780680|r   20 KRHLEPQ-SEYILS   32 (430)
Q Consensus        20 ~R~~~~~-id~il~   32 (430)
                      .||++.+ ||.++.
T Consensus        17 ~rGY~~~EVd~FLd   30 (57)
T 2wuj_A           17 FRGYDEDEVNEFLA   30 (57)
T ss_dssp             TTEEEHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             79989999999999


No 118
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens}
Probab=34.26  E-value=9.5  Score=17.26  Aligned_cols=42  Identities=14%  Similarity=0.229  Sum_probs=33.0

Q ss_pred             EEECCCHHHHHHHHHHHHHHCCCCCCCEECC-------CCCCCCCCCEE
Q ss_conf             4200432289999999988346899838658-------22231018801
Q gi|254780680|r  380 HTLNGSGVAVGRCLIAILENYLNADGSVTIP-------TVLRPYMNNLA  421 (430)
Q Consensus       380 htlNgt~~A~~R~l~ailEn~q~~dg~i~iP-------~~L~pym~g~~  421 (430)
                      --+|-+..|..++|.||.++.....+...||       ..|+.++||-.
T Consensus       271 ~~in~sL~~L~~vi~aL~~~~~~~~~~~~IPyR~SkLT~lL~~~L~G~s  319 (354)
T 3gbj_A          271 SNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS  319 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             0102169999999999975541347998668846889998787549987


No 119
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=34.26  E-value=15  Score=15.85  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCC
Q ss_conf             99999999999886444666667788877443100----2258
Q gi|254780680|r   71 DALKNETSTLKEQLPILEKEEHEVCSSLKKLISCI----PNVP  109 (430)
Q Consensus        71 ~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~I----PNi~  109 (430)
                      ++|+..+-..+.+++..++..+++|+-++.+|+++    |+|+
T Consensus        49 eELi~l~lk~~~~l~~k~~~irELEDYID~LLvRVME~tP~IL   91 (107)
T 2gzd_C           49 EEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSIL   91 (107)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             9999999999999998888999999999999999998581776


No 120
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=32.65  E-value=9.1  Score=17.39  Aligned_cols=16  Identities=6%  Similarity=0.198  Sum_probs=9.1

Q ss_pred             HCCCCCEEECCHHHHH
Q ss_conf             2167530105648899
Q gi|254780680|r  159 LSGARFSVLTGHLAHL  174 (430)
Q Consensus       159 vsGsrF~~Lkg~~A~L  174 (430)
                      |+|..=|++.++-+.+
T Consensus       246 i~~~~KYv~l~asS~~  261 (591)
T 1a31_A          246 IQGSIKYIMLNPSSRI  261 (591)
T ss_dssp             TTCCEEEECBCTTSHH
T ss_pred             CCCCEEEEEECCCCCC
T ss_conf             6896579996754410


No 121
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=32.40  E-value=22  Score=14.61  Aligned_cols=57  Identities=19%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999999999886444666667788877443100225881122113555402420001565665666
Q gi|254780680|r   72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLS  138 (430)
Q Consensus        72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~  138 (430)
                      ++..-++.+..+...-......+.++.-+..|..+.+|+||          .+||+-|+.+-.+|-+
T Consensus       153 EI~~A~~~~~~~~~~~~~~~~~I~~~~i~~~L~~~~~pdpD----------LlIRTsGe~RLSnFLl  209 (249)
T 1f75_A          153 EIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPE----------LLIRTSGEERLSNFLI  209 (249)
T ss_dssp             HHHHHHHHHHHHHHTTSSCGGGCSHHHHGGGSTTTTSCCCS----------EEEECTTCCBCCSCST
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC----------EEEECCCCCCCCCCHH
T ss_conf             99999999999875056650022799999856899989988----------7886388630022145


No 122
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.50  E-value=22  Score=14.50  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999986449-----------------98799999999999998864446666
Q gi|254780680|r   29 YILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEG-----------------NLSLVDALKNETSTLKEQLPILEKEE   91 (430)
Q Consensus        29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~-----------------~~~~~~~Lk~e~~~Lk~eik~le~~~   91 (430)
                      .+..+-.+...+...+..+..+.++...-+..+..-.                 ..+....+......|...++.+++.+
T Consensus        14 ~~q~lq~elq~l~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vlv~~~~~e~~~~L~~~~e~l~~~i~~l~~q~   93 (117)
T 2zqm_A           14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQE   93 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999871786237999943445303299999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             67788877443
Q gi|254780680|r   92 HEVCSSLKKLI  102 (430)
Q Consensus        92 ~~le~el~~ll  102 (430)
                      ..++.++..+-
T Consensus        94 ~~l~~~l~~~~  104 (117)
T 2zqm_A           94 KKLNEKLKELT  104 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 123
>2zpn_A Autophagy-related protein 8; ubiquitin fold, autophagy, cytoplasmic vesicle, lipoprotein, membrane, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 2kq7_A 2kwc_A
Probab=30.03  E-value=11  Score=16.85  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             02100764532684733899841010420043228999999998834689983
Q gi|254780680|r  354 STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGS  406 (430)
Q Consensus       354 Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~  406 (430)
                      +.+....-+|+++   + .. +.=|+. +|++.+.+..+|..|-|.|+.+||=
T Consensus        61 ~qf~~viRkrl~l---~-~~-~alFlf-vn~~l~~~s~~~~~lY~~~KdeDGF  107 (119)
T 2zpn_A           61 GQFVYVIRKRIML---P-PE-KAIFIF-VNDTLPPTAALMSAIYQEHKDKDGF  107 (119)
T ss_dssp             HHHHHHHHHHTTC---C-TT-SCCEEE-BTTBCCCTTCBHHHHHHHHCCTTSC
T ss_pred             HHHHHHHHHHCCC---C-CC-CEEEEE-ECCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             8889997865056---9-78-559999-8982478104799999980788887


No 124
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=29.81  E-value=24  Score=14.31  Aligned_cols=63  Identities=6%  Similarity=0.165  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999986449987999999999999988644466666778887744
Q gi|254780680|r   34 DEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL  101 (430)
Q Consensus        34 d~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l  101 (430)
                      ..+...+..++..+......+.++...+.     ...+.+....+.+..+++.++.....++..+..+
T Consensus        33 e~~~~eleeel~~~~~~lk~Le~~~~~~~-----~~~~~~~~~~~~l~~kl~eae~k~~~aE~~v~~L   95 (107)
T 2wps_A           33 DQNTADITTNTNSINQNTTDIATNTTNIN-----NLSDSITTLMKQIEDKIEEILSKIYHIENEIARI   95 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99899999999988999999998899999-----9999999999999999999999999999999999


No 125
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=28.83  E-value=25  Score=14.19  Aligned_cols=43  Identities=16%  Similarity=0.051  Sum_probs=22.6

Q ss_pred             CCCHHH-HHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
Q ss_conf             310001-122216753010564889999999999986223203202123562
Q gi|254780680|r  150 LMDFDR-ATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL  200 (430)
Q Consensus       150 liDfe~-a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~l  200 (430)
                      .-||-+ +.+..|||     ..||.|.-||..- +...++  ==.-++||.+
T Consensus       149 ~~~f~k~a~~~~GsR-----D~~AQlF~ALLRs-LG~~aR--LV~SLQpl~f  192 (533)
T 2qsf_A          149 RSDFLRAVSKGHGDP-----DISVQGFVAMLRA-CNVNAR--LIMSCQPPDF  192 (533)
T ss_dssp             HHHHHHHHHHTEECH-----HHHHHHHHHHHHH-TTCCEE--EEEEECCCCT
T ss_pred             HHHHHHHHHHCCCCH-----HHHHHHHHHHHHH-CCCCCE--EEEECCCCCC
T ss_conf             899999998604886-----7899999999986-487640--7986478888


No 126
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.68  E-value=25  Score=14.17  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999864499879999999999999886444666667788877
Q gi|254780680|r   30 ILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLK   99 (430)
Q Consensus        30 il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~   99 (430)
                      |...-+..--++-++++|+.+.+.++.++..+..     ..+.|..+-..|+.+-..-.+.++.+-.+++
T Consensus        15 IqqAvdTI~LLQMEieELKEkn~~L~qe~~~~~~-----~~e~L~~eN~qLk~E~~~WqeRlr~LLGKmd   79 (81)
T 2jee_A           15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH-----QREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999999875778899998886-----5899999999989999999999999871030


No 127
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=28.43  E-value=14  Score=16.07  Aligned_cols=29  Identities=7%  Similarity=-0.034  Sum_probs=16.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf             865014578989999999999841067530378
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYRVVSLC  323 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~  323 (430)
                      +|+-+.+.++++    .++.+.+|++-+.+-..
T Consensus       120 ~~~~~~~~~~~f----~~~~~~~G~~~~~i~~~  148 (164)
T 1epa_A          120 SLDDNGEALYNF----RKITSDHGFSETDLYIL  148 (164)
T ss_dssp             CSSCCHHHHHHH----HHHHHHTTCCGGGEEEC
T ss_pred             CCCCCHHHHHHH----HHHHHHCCCCHHHEEEC
T ss_conf             899999999999----99999849898998998


No 128
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=27.34  E-value=26  Score=14.01  Aligned_cols=41  Identities=10%  Similarity=0.043  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998644998799999999999998864
Q gi|254780680|r   45 EDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLP   85 (430)
Q Consensus        45 e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik   85 (430)
                      ..++.+.+.+..+|..+...|+.+...++..+...++.+++
T Consensus       101 ~~l~~~i~~l~~~i~ea~~~gD~~~~~~l~~ei~~L~k~L~  141 (143)
T 2r6a_C          101 RPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKMLS  141 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999888899999999999999999751


No 129
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=26.85  E-value=27  Score=13.95  Aligned_cols=176  Identities=11%  Similarity=0.074  Sum_probs=82.5

Q ss_pred             CCCCCCCCCCCCCCHHHHC----CCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH
Q ss_conf             5656656662112202211----731000112221675301056488999999999998622320320212356202788
Q gi|254780680|r  130 KKPSAIHLSREHFEIGEAL----GLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA  205 (430)
Q Consensus       130 ~~~~f~f~~k~H~elge~l----~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~  205 (430)
                      .+|.+.+....-.||.|..    |.=.+....-...+--.--..+--.+    .+..-+. +...||.|+.+-.++.++.
T Consensus       450 ~vP~~R~DI~~e~DliEEIaRiyGydnip~~~p~~~~~~~~~~~~~~~~----~~~lr~~-L~~~Gf~Ev~tysf~s~~~  524 (795)
T 2rhq_B          450 NVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHK----TRTLKET-LEGAGLNQAITYSLVSKDH  524 (795)
T ss_dssp             EEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHH----HHHHHHH-HHHTTCEECCCCSEECTTT
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH----HHHHHHH-HHHCCCCCCCCCCCCCCHH
T ss_conf             8998545347665377767744373007676862000245678878988----9999999-9864986434522433002


Q ss_pred             HHHHHHCHHHHHHHHHHH----HCCEECCCCCC-HHH-HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCC----CCE
Q ss_conf             986551422476776431----00023134541-145-44534205955504208853221078843355434----321
Q gi|254780680|r  206 MYGTGQIPKFADDMFCTT----DGRWLIPTSEV-SLT-NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDT----RGM  275 (430)
Q Consensus       206 ~~gtG~lp~f~~~~y~~~----d~l~Li~TaEv-pL~-~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~Gkdt----rGl  275 (430)
                      +...+..+   .....+.    .++-..=|+=. +|. ++-.+.-  ....+++++.++++|.........+.    .|+
T Consensus       525 ~~~~~~~~---~~~v~l~NPls~e~s~lR~SLlp~LL~~~~~N~~--r~~~~~~lFEiG~vf~~~~~~~~~~~~~~l~~~  599 (795)
T 2rhq_B          525 AKDFALQE---RPTISLLMPMSEAHATLRQSLLPHLIEATAYNVA--RKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGI  599 (795)
T ss_dssp             TTTTCSSC---CCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHH--TTCCCEEEEEEEEEEECCCTTSCCEEEEEEEEE
T ss_pred             HHHHCCCC---CCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCCHHCCCEEEECCCCCCCCCCHHCEEEE
T ss_conf             11102346---5433215721342556506532667888887774--589875510064289647764453101204677


Q ss_pred             EEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf             222210200212127865014578989999999999841067530
Q gi|254780680|r  276 LRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVV  320 (430)
Q Consensus       276 ~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv  320 (430)
                      ..-+.+    .-.+..... ..-+..+....+.+++.|++.+...
T Consensus       600 ~~g~~~----~~~~~~~~~-~~df~~~Kg~ve~ll~~l~~~~~~~  639 (795)
T 2rhq_B          600 LTGEYV----VNAWQGKKE-EIDFFIAKGVVDRVAEKLNLEFSYK  639 (795)
T ss_dssp             EESEEE----EEGGGTEEE-ECCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             EECCCC----CHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHCEEC
T ss_conf             715634----012126765-6788999889999999843312221


No 130
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A
Probab=25.44  E-value=24  Score=14.22  Aligned_cols=40  Identities=15%  Similarity=0.053  Sum_probs=24.0

Q ss_pred             ECC-CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCC-CCHHCCCHH
Q ss_conf             127-8650145789899999999998410675-3037-801178443
Q gi|254780680|r  288 SIT-REEDSFTEHERMLSCAEEILKRLDLHYR-VVSL-CTGDLGFSA  331 (430)
Q Consensus       288 ~~~-~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~-~sgdlg~~a  331 (430)
                      .++ +|+-+.+.+++...    +.+.+|+|-- +|.+ .+.|.=.++
T Consensus       126 L~sRtp~l~~e~le~F~~----~~~~~G~~~~~Iv~~~~~~d~C~~~  168 (192)
T 3bx6_A          126 VYADKPETTKEQLGEFYE----ALDCLRIPKSDVVYTDWKKDKCEPL  168 (192)
T ss_dssp             EEESSSCCCTTTTHHHHH----HHHHHTCCGGGCEECCGGGCCCHHH
T ss_pred             EEECCCCCCHHHHHHHHH----HHHHCCCCHHHEEECCCCCCCCCCC
T ss_conf             997899999999999999----9988699989989816888978741


No 131
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 1qg5_A 1bsy_A 1bso_A 2akq_A 2blg_A 2q2m_A 2q2p_A 2q39_A 3blg_A ...
Probab=25.13  E-value=26  Score=14.06  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=10.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             865014578989999999999841067
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHY  317 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy  317 (430)
                      +|+-+.+..+++...    ++.|||+=
T Consensus       125 ~p~l~~e~~e~f~~~----~~~~g~~~  147 (162)
T 1beb_A          125 TPEVDDEALEKFDKA----LKALPMHI  147 (162)
T ss_dssp             SSSCCHHHHHHHHHH----HTTSCCCE
T ss_pred             CCCCCHHHHHHHHHH----HHHCCCCH
T ss_conf             999999999999999----99859999


No 132
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=25.05  E-value=23  Score=14.44  Aligned_cols=25  Identities=24%  Similarity=0.054  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf             9899999999998410675303780
Q gi|254780680|r  300 ERMLSCAEEILKRLDLHYRVVSLCT  324 (430)
Q Consensus       300 e~~~~~~~~i~~~L~lpyRvv~~~s  324 (430)
                      +++++.|+.-+..+++|||.+.-..
T Consensus       132 ~~l~~~Ae~GL~~~ni~yr~i~~~~  156 (227)
T 3gr1_A          132 VTAAGQAEAGLKQQALPYSRRNHKG  156 (227)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9999999965875288549995699


No 133
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.97  E-value=29  Score=13.71  Aligned_cols=67  Identities=12%  Similarity=0.060  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999986449987999999999999988644466666778887
Q gi|254780680|r   32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSL   98 (430)
Q Consensus        32 ~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el   98 (430)
                      ...+...++...+..++...+.+.+........+......++..++..+..++..+-..++..-..+
T Consensus         6 ~F~~~v~eI~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   72 (196)
T 1fio_A            6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSA   72 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999865899867889999999999999999999999999986


No 134
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A
Probab=24.35  E-value=29  Score=13.63  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=10.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             650145789899999999998410675
Q gi|254780680|r  292 EEDSFTEHERMLSCAEEILKRLDLHYR  318 (430)
Q Consensus       292 pe~S~~~~e~~~~~~~~i~~~L~lpyR  318 (430)
                      |+-|.+.++++...    .+.+|++=.
T Consensus       125 ~~~~~~~~~~~~~~----~~~~G~~~~  147 (162)
T 3o22_A          125 QTPRAELKEKFTAF----CKAQGFTED  147 (162)
T ss_dssp             SSCCHHHHHHHHHH----HHHTTCCGG
T ss_pred             CCCCHHHHHHHHHH----HHHCCCCHH
T ss_conf             99999999999999----998598989


No 135
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=24.20  E-value=30  Score=13.61  Aligned_cols=16  Identities=19%  Similarity=0.465  Sum_probs=8.5

Q ss_pred             EEEEEECCCCCCCCCC
Q ss_conf             2420001565665666
Q gi|254780680|r  123 ILIRSVGKKPSAIHLS  138 (430)
Q Consensus       123 v~i~~~G~~~~f~f~~  138 (430)
                      .+||+-|+++-.+|-+
T Consensus       229 LlIRTsGe~RLSnFLl  244 (284)
T 2vg3_A          229 LFLRTSGEQRSSNFML  244 (284)
T ss_dssp             EEEECTTCCCCTTTTT
T ss_pred             EEEECCCCCCCCCCCH
T ss_conf             5886478620245210


No 136
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=24.17  E-value=30  Score=13.60  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999846989588999999999999999999999999999999999864499879999999999999886444666
Q gi|254780680|r   11 PEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKE   90 (430)
Q Consensus        11 ~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~   90 (430)
                      .+.....+.......+++.+..+-.+.+.+..+++..+...+.+......+.... ..+...+......|...-..+...
T Consensus        19 l~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~i~~~~~~v~~l~~~~~~l~~~~-~~~~~~i~~~~~~l~~~w~~l~~~   97 (216)
T 1u5p_A           19 LSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSS-AFDTSQVKDKRETINGRFQRIKSM   97 (216)
T ss_dssp             HHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SSCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998638888999999999999999999999997899999999999986059-754799999999999999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             6677888774
Q gi|254780680|r   91 EHEVCSSLKK  100 (430)
Q Consensus        91 ~~~le~el~~  100 (430)
                      ...-...+..
T Consensus        98 ~~~r~~~L~~  107 (216)
T 1u5p_A           98 AAARRAKLNE  107 (216)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999988


No 137
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=23.90  E-value=24  Score=14.33  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
Q ss_conf             6444666667788877443100225881122113
Q gi|254780680|r   84 LPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT  117 (430)
Q Consensus        84 ik~le~~~~~le~el~~lll~IPNi~~~~VP~G~  117 (430)
                      ++..++++...++ ..+..-.+-|++|-.||.|.
T Consensus       104 Lk~F~~K~tayq~-~~q~Q~~~s~l~~ga~~~~~  136 (149)
T 1f32_A          104 VQTFREKIAAFEE-QQENQPPSSGMPHGAVPAGG  136 (149)
T ss_dssp             HHHHHHHHHHHHH-CCCCCCCG------------
T ss_pred             HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCC
T ss_conf             9999999999999-98746311478787546776


No 138
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.30A {Salmonella typhimurium}
Probab=23.23  E-value=24  Score=14.25  Aligned_cols=25  Identities=24%  Similarity=0.054  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf             9899999999998410675303780
Q gi|254780680|r  300 ERMLSCAEEILKRLDLHYRVVSLCT  324 (430)
Q Consensus       300 e~~~~~~~~i~~~L~lpyRvv~~~s  324 (430)
                      +.++..|+.-+..+++|||.+.-..
T Consensus       132 ~~l~~~Ae~GL~~~nv~yr~i~~~~  156 (197)
T 3gr0_A          132 VTAAGQAEAGLKQQALPYSRRNHKG  156 (197)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9999999975775398559984699


No 139
>1ul7_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=22.99  E-value=31  Score=13.45  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCHHHHCC-----CCCHHCCCHHHEEEEEEEE-CCCCCCE
Q ss_conf             0145789899999999998410675303-----7801178443402410110-1004833
Q gi|254780680|r  294 DSFTEHERMLSCAEEILKRLDLHYRVVS-----LCTGDLGFSACKTYDLEVW-LAGQNLY  347 (430)
Q Consensus       294 ~S~~~~e~~~~~~~~i~~~L~lpyRvv~-----~~sgdlg~~a~~~~DiE~w-~P~~~~y  347 (430)
                      .|..--++++...+..++.+++.|+...     +-.++-+....-+++||+. +|...-|
T Consensus        16 TS~~~P~eIm~eI~kaL~~~gi~~k~~g~y~~~c~~~~~~~~~~v~feieV~kv~~~~l~   75 (102)
T 1ul7_A           16 TSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLN   75 (102)
T ss_dssp             CBCSCHHHHHHHHHHHHHHTTCEEEECSTTCEEEEECSSCGGGCEEEEEEEEECSSSSSE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEEECCCCCEE
T ss_conf             757999999999999999859779985999999985589988537999999992788478


No 140
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=22.99  E-value=31  Score=13.44  Aligned_cols=20  Identities=10%  Similarity=-0.027  Sum_probs=10.8

Q ss_pred             CCCEEECCHHHHHHHHHHHH
Q ss_conf             75301056488999999999
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQF  181 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y  181 (430)
                      ...-.+...+..|...|...
T Consensus       205 ~~~~~~~~el~~l~~~l~~~  224 (242)
T 3c9i_A          205 VSDTYTQSEIQAIANALITE  224 (242)
T ss_dssp             CCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999


No 141
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protein secretion, microbial pathogenesi; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=22.77  E-value=31  Score=13.41  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCHHH
Q ss_conf             799999999999998864446666677888774---43100225881122
Q gi|254780680|r   68 SLVDALKNETSTLKEQLPILEKEEHEVCSSLKK---LISCIPNVPLEEVP  114 (430)
Q Consensus        68 ~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~---lll~IPNi~~~~VP  114 (430)
                      ..+..+...+..++..|..++.+++.++.+++.   ....+-|||.++-|
T Consensus        25 ~~l~a~~~~v~~~~~~i~~l~~~I~~~~k~~~~GiA~A~Ama~LP~~~~~   74 (129)
T 2gr7_A           25 SQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMP   74 (129)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999988789999999999999999999999999999769976689


No 142
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=22.57  E-value=28  Score=13.78  Aligned_cols=33  Identities=9%  Similarity=0.106  Sum_probs=19.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHH-HHCCCCCHHC
Q ss_conf             865014578989999999999841067-5303780117
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHY-RVVSLCTGDL  327 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpy-Rvv~~~sgdl  327 (430)
                      +|+-+.+.++++..    +.+.+||+- .++.+...|.
T Consensus       121 ~~~~~~e~~~~f~~----~~~~~G~~~~~I~~~~~~d~  154 (157)
T 1dzk_A          121 GTDIEDQDLEKFKE----VTRENGIPEENIVNIIERDD  154 (157)
T ss_dssp             SSCCCHHHHHHHHH----HHHHTTCCGGGEEESGGGCC
T ss_pred             CCCCCHHHHHHHHH----HHHHCCCCHHHEEECCCCCC
T ss_conf             99999999999999----99984999899699887898


No 143
>1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} SCOP: c.101.1.1 PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1x09_A* 1x08_A*
Probab=22.38  E-value=32  Score=13.36  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999999999886444666667788877443100225881122113555402420001565665666
Q gi|254780680|r   72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLS  138 (430)
Q Consensus        72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~  138 (430)
                      ++..-++.+-++++.-.-....+.+++-..-+..+++|+||          .+||+-|+.+-.+|-+
T Consensus       150 EIv~A~k~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~pdpD----------LlIRTsGe~RLSnFLl  206 (253)
T 1ueh_A          150 DIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVD----------LVIRTGGEHRISNFLL  206 (253)
T ss_dssp             HHHHHHHHHHHHHHTTSCCGGGCCHHHHHTTSTTTTSCCCC----------EEEECSSCCSCTTSSC
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC----------EEEECCCCEECCCCCC
T ss_conf             99999999999998189997887788888764438999964----------5862699601346642


No 144
>2wew_A Apolipoprotein M; lipid transport, ligand-binding specificity, glycoprotein, myristic acid, HDL, lipocalin, transport, lipoproteins; HET: MYR; 1.95A {Homo sapiens} PDB: 2wex_A*
Probab=21.98  E-value=32  Score=13.31  Aligned_cols=19  Identities=11%  Similarity=-0.130  Sum_probs=12.7

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             7865014578989999999
Q gi|254780680|r  290 TREEDSFTEHERMLSCAEE  308 (430)
Q Consensus       290 ~~pe~S~~~~e~~~~~~~~  308 (430)
                      -+|+-|.+.+|++...++.
T Consensus       133 Rtp~vs~e~le~F~~~a~~  151 (172)
T 2wew_A          133 RSPHPPEKCVEEFKSLTSC  151 (172)
T ss_dssp             SSSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             6999999999999999998


No 145
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.37  E-value=19  Score=15.10  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=13.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             1042004322899999999883468998
Q gi|254780680|r  378 FTHTLNGSGVAVGRCLIAILENYLNADG  405 (430)
Q Consensus       378 ~~htlNgt~~A~~R~l~ailEn~q~~dg  405 (430)
                      |+.. |++.+.+.-+|..|-+.|.++||
T Consensus        77 flfv-n~~l~~~s~~~~~lY~~~kdeDG  103 (117)
T 1eo6_A           77 FLFV-DKTVPQSSLTMGQLYEKEKDEDG  103 (117)
T ss_dssp             EEEB-TTBCCCTTSBHHHHHHHHCCTTS
T ss_pred             EEEE-CCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             9999-88647722049999998178886


No 146
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=21.13  E-value=34  Score=13.19  Aligned_cols=29  Identities=10%  Similarity=0.121  Sum_probs=15.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCC
Q ss_conf             8650145789899999999998410675-30378
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLC  323 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~  323 (430)
                      +|+-|.+.++++..    +.+.+||+-. ++.++
T Consensus       122 ~~~~~~e~~~~f~~----~~~~~G~~~e~i~~~~  151 (160)
T 2hlv_A          122 GLNVEDEDLEKFWK----LTEDKGIDKKNVVNFL  151 (160)
T ss_dssp             SSSCCHHHHHHHHH----HHHHTTCCGGGEEETT
T ss_pred             CCCCCHHHHHHHHH----HHHHCCCCHHHEEECC
T ss_conf             99999999999999----9998599989979888


No 147
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=20.70  E-value=29  Score=13.67  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=17.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHH-HCCCCCHH
Q ss_conf             8650145789899999999998410675-30378011
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDLHYR-VVSLCTGD  326 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~lpyR-vv~~~sgd  326 (430)
                      +|+-|.+.++++...    .+.+||+-. ++.++..|
T Consensus       120 ~~~~~~~~~~~f~~~----~~~~Gi~~~~ii~~~~~d  152 (156)
T 1bj7_A          120 GTSFTPEELEKYQQL----NSERGVPNENIENLIKTD  152 (156)
T ss_dssp             SSCCCHHHHHHHHHH----HHHHTCCGGGEEECGGGC
T ss_pred             CCCCCHHHHHHHHHH----HHHCCCCHHHEEECCCCC
T ss_conf             999999999999999----998499989979988789


No 148
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.68  E-value=34  Score=13.12  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998864446666677888774
Q gi|254780680|r   74 KNETSTLKEQLPILEKEEHEVCSSLKK  100 (430)
Q Consensus        74 k~e~~~Lk~eik~le~~~~~le~el~~  100 (430)
                      ++++..||++|++|+++...++.+=.-
T Consensus        14 REEVevLke~I~eL~~~~~~Le~EN~~   40 (78)
T 1dip_A           14 REEVEILKEQIRELVEKNSQLERENTL   40 (78)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999


No 149
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A*
Probab=20.43  E-value=35  Score=13.08  Aligned_cols=12  Identities=8%  Similarity=0.196  Sum_probs=4.7

Q ss_pred             HHEEEEEEEECC
Q ss_conf             340241011010
Q gi|254780680|r  331 ACKTYDLEVWLA  342 (430)
Q Consensus       331 a~~~~DiE~w~P  342 (430)
                      +||.---|+|.=
T Consensus       219 ~SRnst~EmY~v  230 (305)
T 2p41_A          219 LSRNSTHEMYWV  230 (305)
T ss_dssp             TSCTTCCCEEEE
T ss_pred             CCCCCCCEEEEE
T ss_conf             887775227887


No 150
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein- protein complex, metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.07  E-value=35  Score=13.03  Aligned_cols=60  Identities=18%  Similarity=0.112  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999986449987999999999999988644466666778887744
Q gi|254780680|r   37 NRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL  101 (430)
Q Consensus        37 rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l  101 (430)
                      ...++.+++.++.+...+...+..+..     ....+..+...++.++...+.++...+.++...
T Consensus        63 l~e~~~~l~~l~~~~~~l~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~el~~~~~eL~~~  122 (125)
T 2pms_C           63 LEELSDKIDELDAEIAKLEDQLKAAEE-----NNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA  122 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998899999999999999999999-----999999999999999999999999999999975


Done!