RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(430 letters)
>gnl|CDD|30521 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 530 bits (1367), Expect = e-151
Identities = 225/430 (52%), Positives = 298/430 (69%), Gaps = 6/430 (1%)
Query: 1 MLDIQWIRQNPEHLDIALKKRH-LEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIG 59
MLD++ IR+NP+ + LKKR + +L LDE+ R L++++E+++A RN S +IG
Sbjct: 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG 60
Query: 60 QAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119
+A+ G + L E LKE+L LE E+ + L L+ IPN+P E VP+G
Sbjct: 61 RALKRGE-DDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDE 119
Query: 120 NENILIRSVGKKPSAI--HLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERA 177
++N+ +R G+ P + ++H E+GE LGL+DF+RA K+SG+RF G A LERA
Sbjct: 120 DDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERA 179
Query: 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSL 236
L QFM+DLHT +HG+TEV P LV E+M+GTGQ+PKF +D++ +LIPT+EV L
Sbjct: 180 LIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPL 238
Query: 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296
TNL+ EI++ + LP+++T +P FRSEAGSAG+DTRG++R HQF K ELV IT+ E+S
Sbjct: 239 TNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESE 298
Query: 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356
E E ML AEE+L+ L+L YRVV+LCTGDLGFSA K YDLEVWL GQN YREISSCS C
Sbjct: 299 EELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNC 358
Query: 357 GNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416
+FQ+RR+N RYRD +F HTLNGSG+AVGR L+AILENY DGSV IP VLRPY
Sbjct: 359 TDFQARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418
Query: 417 MNNLAVIKKE 426
M L +I K
Sbjct: 419 MGGLEIIPKP 428
>gnl|CDD|29815 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the
attachment of serine to the 3' OH group of ribose of the
appropriate tRNA. This domain It is primarily
responsible for ATP-dependent formation of the enzyme
bound aminoacyl-adenylate. Class II assignment is based
upon its structure and the presence of three
characteristic sequence motifs in the core domain. SerRS
synthetase is a homodimer..
Length = 297
Score = 419 bits (1080), Expect = e-118
Identities = 152/298 (51%), Positives = 200/298 (67%), Gaps = 2/298 (0%)
Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180
+N+ IR G+ ++H E+GE L ++DF+R K+SG+RF L G A LERAL
Sbjct: 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALIN 60
Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239
F +D T + G+T V P LVR E M GTGQ+PKF + ++ + +LI T+EV L L
Sbjct: 61 FALDFLT-KRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAAL 119
Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEH 299
+ EI+E + LPL++ +P FR EAGSAGRDTRG+ R HQF K E T+ E+S+ E
Sbjct: 120 HRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEEL 179
Query: 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359
E ++S AEEIL+ L L YRVV++CTGDLGF+A K YD+E W+ GQ YREISSCS C +F
Sbjct: 180 EELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDF 239
Query: 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417
Q+RR+N RYRD ++ HTLNG+ +A R ++AILENY DGSV IP VLRPYM
Sbjct: 240 QARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297
>gnl|CDD|37720 KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 455
Score = 301 bits (772), Expect = 3e-82
Identities = 147/423 (34%), Positives = 227/423 (53%), Gaps = 31/423 (7%)
Query: 2 LDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61
LD +WI E + L+++ L K+I D++ ++ + Q+ ++
Sbjct: 39 LDKEWIETRFE-----------------LDELNKEKNKLNKEIGDLKLKKKEDIGQLEES 81
Query: 62 IAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANE 121
A+ + E LKE+ LE++E ++ L +++ IPN+ VP+
Sbjct: 82 KAK------NTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQA 135
Query: 122 NILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQF 181
N++ R VG H E+ ALG +D +R K+SG R L G A LE+AL +
Sbjct: 136 NVVQR-VGGPLEFEFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINY 194
Query: 182 MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG---RWLIPTSEVSLTN 238
+D + GYT ++ P ++R E M GQ+P+F ++ + DG ++LI T+E L
Sbjct: 195 ALDF-LNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAA 253
Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTE 298
+ E +E LP+++ ++ FR+EAGS G+DT+G+ R HQF K E IT EDS+
Sbjct: 254 YHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEM 313
Query: 299 HERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358
E M++ EE + L L YRV+++ +G+LG +A K YD+E W+ G+ Y E+ SCS C +
Sbjct: 314 LEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTD 373
Query: 359 FQSRRMNSRYRDP--NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416
+QSRR+ RY N K+ HTLNG+ A R L AILENY DG + +P VLRPY
Sbjct: 374 YQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRALCAILENYQTEDG-IEVPEVLRPY 432
Query: 417 MNN 419
M
Sbjct: 433 MGG 435
>gnl|CDD|144252 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G,
H, P, S and T). Other tRNA synthetase sub-families are
too dissimilar to be included. This domain is the core
catalytic domain of tRNA synthetases and includes
glycyl, histidyl, prolyl, seryl and threonyl tRNA
synthetases.
Length = 170
Score = 170 bits (434), Expect = 6e-43
Identities = 68/175 (38%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLI 229
L AL F+ DL +GY EV P+L E G+G + D+M+ D +L
Sbjct: 1 LRNALENFIRDLFK-RYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLR 59
Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289
PT+EV +T L+ +EI+ + LPL+ + P FR EA R RG+ R +F + +
Sbjct: 60 PTAEVGITRLFKNEILSYRDLPLKLYQIGPCFRYEA----RPRRGLGRVREFTQVDAEIF 115
Query: 290 TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344
E S E E +L AEEIL+ L L YRVV GDLG A KT DLE WL +
Sbjct: 116 GTPEQSEEEDEELLKLAEEILQDLGLPYRVVLNTRGDLGGYASKTGDLEAWLPAE 170
>gnl|CDD|145510 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 99 bits (250), Expect = 1e-21
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHL-EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIG 59
MLDI+ IR+NPE + L+KR + + +L LDE+ R L ++E+++A RN S +IG
Sbjct: 1 MLDIKLIRENPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIG 60
Query: 60 QAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP 109
+A + +AL E LK++L LE E E+ + L KL+ IPN+P
Sbjct: 61 KAKKKK--EDAEALIAEVKELKDELKALEAELRELEAELDKLLLSIPNIP 108
>gnl|CDD|29810 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA
synthetase class II core domain. This domain is the core
catalytic domain of tRNA synthetases of the subgroup
containing glycyl, histidyl, prolyl, seryl and threonyl
tRNA synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. These enzymes belong to class II
aminoacyl-tRNA synthetases (aaRS) based upon their
structure and the presence of three characteristic
sequence motifs in the core domain. This domain is also
found at the C-terminus of eukaryotic GCN2 protein
kinase and at the N-terminus of the ATP
phosphoribosyltransferase accessory subunit, HisZ and
the accessory subunit of mitochondrial polymerase gamma
(Pol gamma b) . Most class II tRNA synthetases are
dimers, with this subgroup consisting of mostly
homodimers. These enzymes attach a specific amino acid
to the 3' OH group of ribose of the appropriate tRNA..
Length = 235
Score = 93.8 bits (233), Expect = 8e-20
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 24/240 (10%)
Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD-GRW----- 227
L RAL +F+ D E+GY E+ P L + G + + +M+ D GR
Sbjct: 4 LWRALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTD 62
Query: 228 --LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285
L P + + ++S EI+ ++LPLR + P FR E RG++R +F + E
Sbjct: 63 LVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVE 118
Query: 286 LVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSAC--------KTYDL 337
V E++ E L AEEI + L L RVV G +
Sbjct: 119 YVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEF 178
Query: 338 EVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397
E+ L +E + S + + + + G+G R ++A+L
Sbjct: 179 ELLLPLPGRAKETAVGSANVHLDHFGASF--KIDEDGGGRAHTGCGGAG-GEERLVLALL 235
>gnl|CDD|29813 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ..
Length = 211
Score = 75.5 bits (185), Expect = 3e-14
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 30/224 (13%)
Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-------ADDMFCTTDGR 226
+E+ L +FM +E G+ EV P++ R+ + G PK ++
Sbjct: 5 IEQKLRRFM-----AELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLY----- 54
Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286
L PT E L L+ I + LPLR + P+FR+E G RG+ R +F + E
Sbjct: 55 -LRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGR-----RGLRRVREFTQLEG 105
Query: 287 VSITREEDSFTEHERMLSCAEEILKRL--DLHYRVVSLCTGDLGFS-ACKTYDLEVWLAG 343
+ + +E E ++ EE+L+ L L V G+ A +++EV
Sbjct: 106 EVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDH-P 164
Query: 344 QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV 387
+ EI S + Q+R + + D + G G+
Sbjct: 165 EGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGL 208
>gnl|CDD|30791 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 71.4 bits (175), Expect = 4e-13
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 189 EHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLTNLYSHEI 244
+ G EV P L+ E +G+ F ++F D L PTSE +T+++ I
Sbjct: 63 KIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWI 122
Query: 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSI-TREEDSFTEHERM 302
K LPL+ + FR E R G+LR +F K + S EED+ +E+M
Sbjct: 123 RSYKDLPLKLYQIQSKFRDEK----RPRFGLLRGREFLMK-DAYSFHADEEDAEETYEKM 177
Query: 303 LSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG-NFQS 361
L I RL L + V G +G +++ E L +I++ G NF+
Sbjct: 178 LDAYSRIFLRLPLIFGPVPADEGFIG--GSYSHEFEA-LMPDGGEDQIATSHHYGANFEK 234
Query: 362 RRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTV 412
++ ++ D L++ HT S R + A + + + +G V P V
Sbjct: 235 AFIDIKFEDEEEGELEYVHT--TSYGISTRIIGAAILIHGDNEGLVLPPIV 283
>gnl|CDD|73229 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II
core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
prokaryotes and from the mitochondria of eukaryotes..
Length = 255
Score = 64.4 bits (157), Expect = 6e-11
Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 12/221 (5%)
Query: 183 IDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLTN 238
I ++ G E+ P+L E +G+ + ++ D L PT E +T+
Sbjct: 41 IREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITD 100
Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFT 297
L ++EI K LPL + FR E R G++R +F + S EE
Sbjct: 101 LVANEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFLMKDAYSFDIDEESLEE 156
Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357
+E+M I KRL L + V +G +G S + + L E+ G
Sbjct: 157 TYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITKGI-EVGHIFQLG 215
Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE 398
S+ + + + D N K + G+ V R L AI+E
Sbjct: 216 TKYSKALGATFLDENGKPKPL--EMGCYGIGVSRLLAAIIE 254
>gnl|CDD|37535 KOG2324, KOG2324, KOG2324, Prolyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 457
Score = 51.1 bits (122), Expect = 6e-07
Identities = 62/283 (21%), Positives = 107/283 (37%), Gaps = 44/283 (15%)
Query: 182 MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLT 237
++D G ++S P+L E TG+ ++F D + L PT E +T
Sbjct: 61 LLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDIT 120
Query: 238 NLYSHEI-IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDS 295
L + I + K LP+R + FR E G+LR +F ++ S + EE +
Sbjct: 121 ALMATYIPLSYKQLPIRVYQIGRKFRDELRPRF----GLLRGREFLMKDMYSFDSDEETA 176
Query: 296 FTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYR------- 348
++ + + I K+L L + V +GD+G + L + L
Sbjct: 177 QQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYS 236
Query: 349 ------EISSCSTCGNFQSRRMNS--------------RYRDP-NSKSLKFTHT-----L 382
++S ++C R+ +Y P N+K + +
Sbjct: 237 KNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHM 296
Query: 383 NGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425
G+ V R L A E L+ D + P+++ PY L KK
Sbjct: 297 GCYGIGVTRLLAAAAE-VLSDDKGLRWPSLIAPYKVCLIGPKK 338
>gnl|CDD|30790 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 49.5 bits (118), Expect = 2e-06
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 30/198 (15%)
Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
R+H ++G+ L L F G F G L ++ +GY EV P
Sbjct: 190 RDHRKLGKELDLFSFSPEEG-PGLPFWHPKGATIR--NLLEDYVRTKL-RSYGYQEVKTP 245
Query: 199 LLVRDEAMYGTGQIPKFADDMFCTT-DGRWLI--PTSEVSLTNLYSHEIIESKSLPLRFT 255
+L E +G + +DMF T D R P + ++ + + LPLR
Sbjct: 246 VLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLA 305
Query: 256 TLAPSFR---SEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312
+R S A RG + + F +++ +E
Sbjct: 306 EFGYVYRYEKSGALHGLMRVRGFTQ-------------DDAHIFCTPDQI---KDEFKGI 349
Query: 313 LDLHYRVVSLCTGDLGFS 330
L+L V D GF+
Sbjct: 350 LELILEV----YKDFGFT 363
>gnl|CDD|29816 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is
responsible for the attachment of threonine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain..
Length = 298
Score = 48.6 bits (116), Expect = 3e-06
Identities = 45/213 (21%), Positives = 72/213 (33%), Gaps = 14/213 (6%)
Query: 141 HFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200
H +G L L F G F + G A + L F+ +L + GY EV P++
Sbjct: 2 HRRLGGELELFFFFDEAG-PGLPFWLPKG--AIIRNELEDFLRELQ-RKRGYQEVETPII 57
Query: 201 VRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFTTL 257
E +G + ++MF + L P + ++ + + LPLR
Sbjct: 58 YNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEF 117
Query: 258 APSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317
R E A G+ R F + + + E + +L +E+
Sbjct: 118 GTVHRYEQSGA---LHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174
Query: 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREI 350
V L T F EVW + RE
Sbjct: 175 YKVELSTRPEKFIG----SDEVWEKAEAALREA 203
>gnl|CDD|58340 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain..
Length = 264
Score = 44.3 bits (104), Expect = 6e-05
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 18/231 (7%)
Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK-FADDMFCTTDGR--------WLIP 230
+ ++D EHG P + + + + F+ ++ D L P
Sbjct: 39 ENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRP 98
Query: 231 TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSI 289
T E ++ + + I K LP + FR E R G LR +F K +
Sbjct: 99 TLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI----RPRFGFLRAREFIMKDGHSAH 154
Query: 290 TREEDSFTEHERMLSCAEEILKRL-DLHYRVVSLCTGDLGFSACKTYDLEVWLA-GQNLY 347
E++ E MLS EI + L + + G A K+ + E + G+
Sbjct: 155 ADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMEDGKAKQ 214
Query: 348 REISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE 398
E G ++ + +++ D + K KF G+ + R + AI+E
Sbjct: 215 AETGHIFGEGFARAFDLKAKFLDKDGK-EKFFEM-GCWGIGISRFIGAIIE 263
>gnl|CDD|29823 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class
II core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
archaea, the cytoplasm of eukaryotes and some bacteria..
Length = 261
Score = 40.5 bits (95), Expect = 0.001
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 189 EHGYTEVSAPLLV-RDEAMYGTGQIPKFADDMFCTTDGR--------WLIPTSEVSLTNL 239
E G+ V PLL+ E I FA ++ T G L PTSE ++ +
Sbjct: 48 ETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPM 107
Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSITREEDSFTE 298
+S I + LPL+ FR E + TR LR +F W+ + EE++ E
Sbjct: 108 FSKWIRSYRDLPLKINQWVNVFRWET----KTTRPFLRTREFLWQEGHTAHATEEEAEEE 163
Query: 299 HERMLSCAEEILKRL 313
++L +E + L
Sbjct: 164 VLQILDLYKEFYEDL 178
>gnl|CDD|30473 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 36.0 bits (83), Expect = 0.020
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 27/142 (19%)
Query: 190 HGYTEVSAP------LLVR---DEAMYGTGQIPKFADDMFCTTDGRW--LIPTSEVSLTN 238
+G++E+ P L R +E ++ F D GR L P +
Sbjct: 35 YGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-----GGRSLALRPELTAPVAR 89
Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTE 298
+ ++ PL+ P FR E G R QF++ V + + +
Sbjct: 90 AVAENKLDLP-KPLKLYYFGPVFRYERPQKG-------RYRQFYQFG-VEVIGSDSPDAD 140
Query: 299 HERMLSCAEEILKRLDL-HYRV 319
E +++ A EIL+ L + + +
Sbjct: 141 AE-VIALAVEILEALGIGGFTL 161
>gnl|CDD|36850 KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 560
Score = 35.3 bits (81), Expect = 0.037
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
R+H +IG+ L F + G+ F + G + L F+ + G+TEV P
Sbjct: 163 RDHRKIGKEQELFFFHELS--PGSCFFLPHG--TRIYNTLVDFI-RAEYRKRGFTEVITP 217
Query: 199 LLVRDEAMYGTGQIPKFADDMFC---TTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT 255
+ + +G ++++MF + L P + +++H + LPLRF
Sbjct: 218 NIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFA 277
Query: 256 TLAPSFRSEAGSA 268
R+EA A
Sbjct: 278 DFGVLHRNEASGA 290
>gnl|CDD|73226 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding
domain..
Length = 261
Score = 33.6 bits (77), Expect = 0.11
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 190 HGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GRW--LIPTSEVSLTNLYSHEII 245
+GY E+ P+ E ++ + + +M+ D GR L P + + ++
Sbjct: 19 YGYEEIDTPVFEYTE-LFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLL 77
Query: 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSC 305
S LPL+ + P FR E G R +F++ V I + + E +++
Sbjct: 78 -SLPLPLKLYYIGPVFRYERPQKG-------RYREFYQVG-VEIIGSDSPLADAE-VIAL 127
Query: 306 AEEILKRLDL 315
A EIL+ L L
Sbjct: 128 AVEILEALGL 137
>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
the periplasmic membrane in yeast. This group contains
members identified in targeting of yeast membrane
proteins ATPase. AST1 is a cytoplasmic protein
associated with the periplasmic membrane in yeast,
identified as a multicopy suppressor of pma1 mutants
which cause temperature sensitive growth arrest due to
the inability of ATPase to target to the cell surface.
This family is homologous to the medium chain family of
dehydrogenases and reductases. Medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 352
Score = 31.5 bits (72), Expect = 0.45
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTI 409
+ P+SK L + G +VGR I + +N+ N V
Sbjct: 147 QKLGPDSKVL-----VLGGSTSVGRFAIQLAKNHYNIGTVVGT 184
>gnl|CDD|35774 KOG0554, KOG0554, KOG0554, Asparaginyl-tRNA synthetase
(mitochondrial) [Translation, ribosomal structure and
biogenesis].
Length = 446
Score = 31.4 bits (71), Expect = 0.46
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 45/168 (26%)
Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRD------EAMYGTGQIPK----FADDMFCTT 223
L A F H +T ++ P++ + E T F F T
Sbjct: 138 LAFATHSFF-----QSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTV 192
Query: 224 DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK 283
G+ + +L+ +Y T P+FR+E T L +FW
Sbjct: 193 SGQLHLEAMACALSRVY---------------TFGPTFRAE----NSHTSRHLA--EFWM 231
Query: 284 CELVSITREEDSFTEH-ERMLSCAEEILKRLDLHYRVVSLCTGDLGFS 330
E E +F E + ++SCAE +K + ++ C D+
Sbjct: 232 LEA------ELAFAESLDDLMSCAEAYIK--HMIKYLLEKCIEDMELM 271
>gnl|CDD|30367 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 31.3 bits (71), Expect = 0.51
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIP--KFADDMFCTTDGRWLI 229
+ + RA+ +F E+G+TEV P++ G F + + T +
Sbjct: 138 SSILRAIREFF-----YENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQ--- 189
Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289
LY + + R T+ P+FR+E +TR L +FW +
Sbjct: 190 ---------LYKEALAAALE---RVFTIGPTFRAEK----SNTRRHL--SEFWMLDP--- 228
Query: 290 TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLE 338
E +F + ++ AEE++K L +V+ C +L F +L+
Sbjct: 229 ---EMAFADLNDVMDLAEELIKY--LFKKVLEECADELEFLGRDNSELK 272
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides..
Length = 359
Score = 30.6 bits (70), Expect = 0.75
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK 377
+V+ G LGF T L R + FQ+ K
Sbjct: 106 KVIYTVHG-LGF--VFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKK 162
Query: 378 FTHTLNGSGVAVGRC 392
T + GSGV + R
Sbjct: 163 KTVLIPGSGVDLDRF 177
>gnl|CDD|143920 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 341
Score = 29.5 bits (67), Expect = 2.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 256 TLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313
+AP FR E D R R +F + +L E SF ++E ++ E+++K +
Sbjct: 94 QIAPCFRDE------DLRT-DRHPPEFTQLDL------EMSFVDYEDVMDLTEDLIKYV 139
>gnl|CDD|73394 cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene..
Length = 234
Score = 28.5 bits (64), Expect = 3.7
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 41 IKKIEDIRARRNSN--SAQIGQAIAEGNLSLVDALK 74
+ ++DI+A + +G+A+ EG ++L +AL
Sbjct: 199 VSSLDDIKALKELGVAGVIVGKALYEGKITLEEALA 234
>gnl|CDD|39365 KOG4163, KOG4163, KOG4163, Prolyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 551
Score = 28.4 bits (63), Expect = 3.8
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVS 288
PTSE + Y+ I + LPL+ R E + + LR +F W
Sbjct: 164 PTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEF----KHPQPFLRTREFLW------ 213
Query: 289 ITREEDSFTEHERMLSCAEEILKRLDLHYRV 319
++ T EE+L+ LDL+ RV
Sbjct: 214 ----QEGHTAFATPEEAEEEVLQILDLYARV 240
>gnl|CDD|36667 KOG1454, KOG1454, KOG1454, Predicted hydrolase/acyltransferase
(alpha/beta hydrolase superfamily) [General function
prediction only].
Length = 326
Score = 28.1 bits (62), Expect = 4.5
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 108 VPLEEVPIGTSANENILIRSVGKKPSAIHLSREH--FEIGEALGLMDFDRATKLSGARFS 165
+ L +G N LI+ + K P I + + A L KL A
Sbjct: 242 LSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEELKK-----KLPNAELV 296
Query: 166 VL--TGHLAHLERA 177
+ GHL HLER
Sbjct: 297 EIPGAGHLPHLERP 310
>gnl|CDD|35728 KOG0508, KOG0508, KOG0508, Ankyrin repeat protein [General function
prediction only].
Length = 615
Score = 28.0 bits (62), Expect = 5.7
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILI---RSVGKKPSAIH 136
L E++ +++H ++ +L+ P + + ++N V + PSA H
Sbjct: 451 LLEKVECTPEQDHLKHQTIYRLLKLAPRGKNGFTLLHLAVDKNTTNVGRYPVCRFPSA-H 509
Query: 137 LSREHFEIGEALGLMDFDRATKL 159
+++ E G + DFD T L
Sbjct: 510 VTKVLLECGADVNARDFDNNTPL 532
>gnl|CDD|38517 KOG3307, KOG3307, KOG3307, Molybdopterin converting factor subunit
2 [Coenzyme transport and metabolism].
Length = 150
Score = 27.7 bits (61), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 70 VDALKNETSTLKEQLPILEKEEHEVCSSLKKLISC 104
+ A + LK +PI +KEE+EV K I
Sbjct: 110 LQATEKCIDLLKAHVPIWKKEEYEVDGVWKSNIED 144
>gnl|CDD|176894 cd08885, RHO_alpha_C_1, C-terminal catalytic domain of the
oxygenase alpha subunit of an uncharacterized subgroup
of Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases. C-terminal catalytic domain of the
oxygenase alpha subunit of a functionally
uncharacterized subgroup of the Rieske-type non-heme
iron aromatic ring-hydroxylating oxygenase (RHO) family.
RHOs, also known as aromatic ring hydroxylating
dioxygenases, utilize non-heme Fe(II) to catalyze the
addition of hydroxyl groups to the aromatic ring, an
initial step in the oxidative degradation of aromatic
compounds. RHOs are composed of either two or three
protein components, and are comprised of an electron
transport chain (ETC) and an oxygenase. The ETC
transfers reducing equivalents from the electron donor
to the oxygenase component, which in turn transfers
electrons to the oxygen molecules. The oxygenase
components are oligomers, either (alpha)n or
(alpha)n(beta)n. The alpha subunits are the catalytic
components and have an N-terminal domain, which binds a
Rieske-like 2Fe-2S cluster, and a C-terminal domain
which binds the non-heme Fe(II). The Fe(II) is
co-ordinated by conserved His and Asp residues. This
group contains two putative Parvibaculum lavamentivorans
(T) DS-1 oxygenases; this organism catabolizes
commercial linear alkylbenzenesulfonate surfactant (LAS)
and other surfactants, by a pathway involving an
undefined 'omega-oxygenation' and beta-oxidation of the
LAS side chain. The nature of the LAS-oxygenase is
unknown but is likely a multicomponent system. This
subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 190
Score = 27.7 bits (62), Expect = 6.9
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 161 GARFSVLTGHLAHLERALGQF 181
G+RF+V G L+HLER + QF
Sbjct: 162 GSRFAV-PGRLSHLERPIWQF 181
>gnl|CDD|35775 KOG0555, KOG0555, KOG0555, Asparaginyl-tRNA synthetase
[Translation, ribosomal structure and biogenesis].
Length = 545
Score = 27.6 bits (61), Expect = 7.5
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 186 HTSEHGYTEVSAPLLVRDEAMYGTG--QIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHE 243
H E GYTEV+ P +V+ + G+ ++ + ++ + T + + T +L ++Y
Sbjct: 256 HYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLPALGDVY--- 312
Query: 244 IIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303
+ S+R+E TR L ++ + E +T D + L
Sbjct: 313 ------------CIQQSYRAEKSR----TRRHLSEYTHVEAECAFLTF--DDLLDRIEAL 354
Query: 304 SC 305
C
Sbjct: 355 VC 356
>gnl|CDD|29821 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate..
Length = 322
Score = 27.4 bits (61), Expect = 8.7
Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 35/145 (24%)
Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTTDGRWLI 229
+ + RA +F+ E+G+TEV P + + G ++ F + +
Sbjct: 28 SEVLRAFREFL-----RENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLYK 82
Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289
+L +Y + P FR+E +TR L +FW E
Sbjct: 83 EMLIAALERVY---------------EIGPVFRAEK----SNTRRHL--SEFWMLEA--- 118
Query: 290 TREEDSFTEHER-MLSCAEEILKRL 313
E +F E ++ EE++K +
Sbjct: 119 ---EMAFIEDYNEVMDLIEELIKYI 140
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,145,499
Number of extensions: 267312
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 36
Length of query: 430
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 333
Effective length of database: 4,167,664
Effective search space: 1387832112
Effective search space used: 1387832112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)