RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (430 letters) >gnl|CDD|180077 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional. Length = 425 Score = 692 bits (1789), Expect = 0.0 Identities = 234/427 (54%), Positives = 304/427 (71%), Gaps = 3/427 (0%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+ IR+NPE + AL KR + +L LDE+ R L ++E+++A RN+ S +IGQ Sbjct: 1 MLDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A +G +AL E LKE++ LE E E+ + L++L+ IPN+P + VP+G + Sbjct: 61 AKRKGED--AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDED 118 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N+ +R G+ ++H+E+GE LG++DF+RA K+SG+RF VL G A LERAL Q Sbjct: 119 DNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQ 178 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239 FM+DLHT EHGYTEV P LV +E+MYGTGQ+PKF +D++ D +LIPT+EV LTNL Sbjct: 179 FMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIEDDDLYLIPTAEVPLTNL 238 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEH 299 + EI++ + LPL++T +P FRSEAGSAGRDTRG++R HQF K ELV T+ EDS+ E Sbjct: 239 HRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAEL 298 Query: 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359 E + + AEEIL++L+L YRVV LCTGDLGFSA KTYDLEVWL QN YREISSCS C +F Sbjct: 299 EELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDF 358 Query: 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNN 419 Q+RR N RYRD + HTLNGSG+AVGR L+AILENY ADGSVTIP VLRPYM Sbjct: 359 QARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG 418 Query: 420 LAVIKKE 426 L VI + Sbjct: 419 LEVIPPK 425 >gnl|CDD|161867 TIGR00414, serS, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. Length = 418 Score = 484 bits (1248), Expect = e-137 Identities = 200/420 (47%), Positives = 284/420 (67%), Gaps = 5/420 (1%) Query: 1 MLDIQWIRQNPEHLDIALKKRHL--EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQI 58 MLD + +R NP+ + +LK R L + E +++LD++ + L+ +IE+++A+RN S QI Sbjct: 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60 Query: 59 GQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS 118 G+A + ++ +K E LKE+L L + + L+ + IPN+P E VP+G Sbjct: 61 GKAKGQKK-DKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119 Query: 119 ANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 +N+ ++ G P + H+E+GE LG +DFDRA K++G+RF L A LERAL Sbjct: 120 EEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERAL 179 Query: 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR-WLIPTSEVSLT 237 FM+DL ++GY E+ P LV +E++ GTGQ+PKF +D+F D +LIPT+EV LT Sbjct: 180 INFMLDLL-EKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLEDTDLYLIPTAEVPLT 238 Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297 NL+ +EI+E + LP+++T +P FRSEAGS G+DT+G++R HQF K ELV + E+S Sbjct: 239 NLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAE 298 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 E E M S AE+IL+ L+L YRVV+LC+GDLGFSA K YDLEVW+ GQN YREISSCS C Sbjct: 299 ELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCT 358 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 +FQ+RR+N RY+D N K+ HTLNG+ +A+GR ++AILENY DGSV IP VLR Y+ Sbjct: 359 DFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 >gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase. Length = 502 Score = 261 bits (668), Expect = 3e-70 Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 23/442 (5%) Query: 2 LDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61 +D +WIR N E + I ++ R+ E +L L E L K++E +RA RN+ + ++ Sbjct: 67 IDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKM--- 123 Query: 62 IAEGNL--SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119 +G L S AL E LKE L LE++ ++ L+ IPN+ +VP+G Sbjct: 124 --KGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGE- 180 Query: 120 NENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALG 179 + + + + VG ++H ++G+ L L DFD A ++SG++F L LE AL Sbjct: 181 DSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALV 240 Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG--RWLIPTSEVSLT 237 + + + G+T ++ P +VR + G P+ + + DG + LI T+E+ + Sbjct: 241 NWTLS-EVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVG 299 Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297 ++ I+ +LPL++ + FR+EAG+AG TRG+ R HQF K E+ I R E+S + Sbjct: 300 GIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESES 359 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 HE ++ E++ L LH++ + + T DLG A + +D+E W+ G Y EISS S C Sbjct: 360 FHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCT 419 Query: 358 NFQSRRMNSRYR--DP----------NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADG 405 ++QSRR+ RYR +P + KF HTLN + AV R ++ +LENY DG Sbjct: 420 DYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDG 479 Query: 406 SVTIPTVLRPYMNNLAVIKKEH 427 SV IP LRP+M L +IK + Sbjct: 480 SVVIPEPLRPFMGGLELIKPKS 501 >gnl|CDD|178282 PLN02678, PLN02678, seryl-tRNA synthetase. Length = 448 Score = 255 bits (652), Expect = 2e-68 Identities = 140/433 (32%), Positives = 228/433 (52%), Gaps = 19/433 (4%) Query: 1 MLDIQWIRQ----NPEHLDIALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNS 55 MLDI R+ +PE + + ++R + + +++LD++ R +++ +R N + Sbjct: 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLN 60 Query: 56 AQIGQ-AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVP 114 ++ + IA+ + L ET LK+++ E E E ++L + I N+ + VP Sbjct: 61 KEVAKLKIAKED---ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVP 117 Query: 115 IGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHL 174 + N ++R+ G+K L + H ++ E LG++D +R ++G R L G L Sbjct: 118 VSNDEANNAVVRTWGEKRQEPKL-KNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLL 176 Query: 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT---DGRWLIPT 231 +AL F + + GYT + P +R + M Q+ +F ++++ T D ++LI T Sbjct: 177 NQALINFGLAF-LRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIAT 235 Query: 232 SEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT- 290 SE L + + I+ K LP+R+ + FR EAGS GRDT G+ R HQF K E IT Sbjct: 236 SEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 Query: 291 -REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYRE 349 +S+ HE ML +E+ + L + Y+VVS+ +G L +A K YDLE W YRE Sbjct: 296 PNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRE 355 Query: 350 ISSCSTCGNFQSRRMNSRYRDP--NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407 + SCS C ++QSRR+ RY N ++ ++ H LN + A R L ILENY DG V Sbjct: 356 LVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDG-V 414 Query: 408 TIPTVLRPYMNNL 420 +P VL+P+M + Sbjct: 415 RVPEVLQPFMGGI 427 >gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. Length = 568 Score = 51.7 bits (124), Expect = 4e-07 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 189 EHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GR--WLIPTSEVSLTNLYSHEI 244 + G EV P L E +G+ + ++ D GR L PT E +T+L +EI Sbjct: 63 KDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEI 122 Query: 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFTEHERML 303 K LPL + FR E R G++R +F + S + EE +++M Sbjct: 123 KSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMY 178 Query: 304 SCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335 I RL L +R V +G +G SA + Sbjct: 179 QAYSNIFSRLGLDFRPVQADSGAIGGSASHEF 210 >gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. Length = 563 Score = 48.9 bits (117), Expect = 3e-06 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 11/195 (5%) Query: 136 HLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEV 195 R+H ++G+ L L F+ G A + L F+ GY EV Sbjct: 167 AKKRDHRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKY-GYMEV 222 Query: 196 SAPLLVRDEAMYGTGQIPKFADDMFCTTDGRW----LIPTSEVSLTNLYSHEIIESKSLP 251 P++ E +G + + MF T+ L P + ++ + + LP Sbjct: 223 ETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLP 282 Query: 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 LR L S R E G++R F + + E+ E + +++ Sbjct: 283 LRIAELGYSHRYEQSGE---LHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 Query: 312 RLDLHYRVVSLCTGD 326 + L T D Sbjct: 340 DFGFSFDKYELSTRD 354 >gnl|CDD|179183 PRK00960, PRK00960, seryl-tRNA synthetase; Provisional. Length = 517 Score = 45.8 bits (109), Expect = 2e-05 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 51/217 (23%) Query: 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI------------PKFADD 218 + L RA + +I+ G+ E P L+ E MY + PK + Sbjct: 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPE 281 Query: 219 MFCTTDGRWLIPTSEVSLTNL----------------------YSHEIIESKSLPLR-FT 255 F ++ EV + L + E ++ LP++ F Sbjct: 282 YF-EEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFD 340 Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 ++R E G A G+ R ++F + E+V + E + +L A + ++LDL Sbjct: 341 RSGWTYRWEGGGA----HGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDL 396 Query: 316 HY-RVVS----------LCTGDLGFSACKTYDLEVWL 341 Y R V L + F Y++E+WL Sbjct: 397 EYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWL 433 >gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. Length = 520 Score = 42.6 bits (100), Expect = 2e-04 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 38/180 (21%) Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGR------ 226 L RAL +F I+ + G+ E P L+ + M + + M+ C R Sbjct: 225 LFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFE 284 Query: 227 ----WLIPTSEVSLTNL----------------------YSHEIIESKSLPLRFTTLAP- 259 LI E+ + L + E+I+++ P++F + Sbjct: 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGW 344 Query: 260 SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319 ++R EAG A +G+ R H+F + E V I E++ ++ L AE+ LDL + Sbjct: 345 TYRWEAGGA----KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWT 400 >gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed. Length = 638 Score = 37.8 bits (89), Expect = 0.006 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT--DGRWL 228 R L +++ + GY EV P ++ D ++ T G + ++MF TT DG Sbjct: 274 RELERYIRRKLR-KAGYQEVKTPQIL-DRELWETSGHWDHYRENMFPTTESDGEEY 327 >gnl|CDD|161863 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. Length = 472 Score = 35.9 bits (83), Expect = 0.020 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 14/114 (12%) Query: 180 QFMIDLHTSEHGYTEVSAPLLV-RDEAMYGTGQIPKFADDMFCTTDGRW--------LIP 230 Q ++ E G+ EV P+L+ E I F +++ T G L P Sbjct: 45 QKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRP 104 Query: 231 TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WK 283 TSE ++ ++ + LPL+ FR E + TR LR +F W+ Sbjct: 105 TSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYET----KHTRPFLRTREFTWQ 154 >gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed. Length = 575 Score = 34.4 bits (80), Expect = 0.053 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198 R+H ++G+ L L F G V A + R + ++ H + GY V P Sbjct: 176 RDHRKLGKELDLFSFP---DEIGPGLPVWHPKGAIIRREIEDYLRKEHL-KRGYEFVYTP 231 Query: 199 LLVRDEAMYGTGQIPKFADDMF 220 + + + +G + + ++MF Sbjct: 232 HIGKSDLWKTSGHLDNYKENMF 253 >gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional. Length = 562 Score = 33.1 bits (76), Expect = 0.15 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 13/108 (12%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKI-------EDIRARRNS 53 +LDI + +D K + E + I +LD K + ++I E+ R + Sbjct: 159 LLDISVL----SEMDKLNKDKIRELNQQ-IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE 213 Query: 54 NSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL 101 N A+ Q + + +K E L ++L L + + ++L KL Sbjct: 214 NIARK-QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260 >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed. Length = 639 Score = 32.0 bits (73), Expect = 0.34 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 31/194 (15%) Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198 R H ++G+ L L F + + G F + G + E L F+ ++ E+ Y EV P Sbjct: 245 RNHRKLGKELELFMF--SEEAPGMPFYLPKGQIIRNE--LEAFLREIQK-EYNYQEVRTP 299 Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTN-------------LYSHEII 245 ++ E +G + D+M+ SEV + ++ +++ Sbjct: 300 FMMNQELWERSGHWDHYKDNMY----------FSEVDNKSFALKPMNCPGHMLMFKNKLH 349 Query: 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSC 305 + LP+R R E A G+LR F + + + E + +++ Sbjct: 350 SYRELPIRMCEFGQVHRHEFSGA---LNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQ 406 Query: 306 AEEILKRLDLHYRV 319 + + K Y V Sbjct: 407 IDYVYKTFGFEYEV 420 >gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional. Length = 206 Score = 31.2 bits (71), Expect = 0.55 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEK 89 L+ + + L K+ +I N +A++ Q +A + S+++ LK E LK QL + +K Sbjct: 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVA-QSDSVINGLKEENQKLKNQLIVAQK 153 >gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. Length = 1310 Score = 29.0 bits (65), Expect = 2.5 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 24 EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVD 71 E Q Y+L + +N + I R A +G A +G L+LVD Sbjct: 547 ESQERYVLLVRAENLEIFTAIC---ERERCPFAVVGTATGDGRLTLVD 591 >gnl|CDD|178147 PLN02532, PLN02532, asparagine-tRNA synthetase. Length = 633 Score = 28.7 bits (64), Expect = 2.9 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 29/115 (25%) Query: 215 FADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRG 274 F+ + T GR + + +L N+Y T P FR++ + R Sbjct: 368 FSRPTYLTVSGRLHLESYACALGNVY---------------TFGPRFRADRIDSARHLAE 412 Query: 275 MLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF 329 M W E+ E +F+E E ++CAE+ K L V+ C+ D+ F Sbjct: 413 M------WMVEV------EMAFSELEDAMNCAEDYFKF--LCKWVLENCSEDMKF 453 >gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1290 Score = 28.6 bits (65), Expect = 3.2 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 24 EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET 77 E Q Y+L++ ++ ++ E I R A +G+A E +L+L D+ + Sbjct: 541 ESQERYVLAIAPED---LELFEAICERERCPFAVVGEATEERHLTLEDSHFDNK 591 >gnl|CDD|179108 PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated. Length = 233 Score = 28.5 bits (65), Expect = 3.9 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 41 IKKIEDIRARRNSNSAQ---IGQAIAEGNLSLVDA 72 + ++DI+A + + + +G+A+ EG L +A Sbjct: 199 VSSLDDIKALKGLGAVEGVIVGRALYEGKFDLAEA 233 >gnl|CDD|173415 PTZ00124, PTZ00124, adenosine deaminase; Provisional. Length = 362 Score = 27.9 bits (62), Expect = 5.0 Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 299 HERMLSCAEEILKRLDLHYRVVSLCTGDLGFSA 331 H+ ++ +E ++ LD V LC GD G A Sbjct: 144 HQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDA 176 >gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated. Length = 326 Score = 27.9 bits (63), Expect = 5.0 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%) Query: 31 LSLDEKNRILIKKIEDIRA---RRNSNSAQIGQAIAEGN----LSLVDAL--KNE 76 L+L +N E+++A NS Q+ A+ +GN L+L+D L NE Sbjct: 176 LALYAENSTKPISAEEVKALVSNTTQNSLQLADALLQGNTGKALALLDDLLDANE 230 >gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase. Length = 487 Score = 27.8 bits (62), Expect = 6.2 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 17/106 (16%) Query: 191 GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GR--WLIPTSEVSLTNLYSHEIIE 246 G+ EV AP+L E +Y + D ++ D GR L P SL L +++ Sbjct: 102 GFEEVDAPVLES-EELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARL----VLQ 156 Query: 247 ---SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289 S SLPL++ + +R E R TRG R+H W +++ + Sbjct: 157 KGKSLSLPLKWFAIGQCWRYE-----RMTRGRRREHYQWNMDIIGV 197 >gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed. Length = 286 Score = 27.6 bits (62), Expect = 6.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Query: 167 LTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 L HLA L R+LG+ I + EV L+ R+ G Sbjct: 46 LDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRVREG 87 >gnl|CDD|165240 PHA02929, PHA02929, N1R/p28-like protein; Provisional. Length = 238 Score = 27.4 bits (61), Expect = 7.2 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%) Query: 71 DALKNETSTLKEQLPILEKEE-------HEVCSSLKKLISCIPNVPLE 111 LKN+ S K + KEE ++ + KK + IP+V E Sbjct: 117 KILKNKPSNDKINYIYMRKEEDMFYAIINKKGKNYKKFLKTIPSVLSE 164 >gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated. Length = 822 Score = 27.3 bits (61), Expect = 7.4 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEE 91 +L++ ++ E++ A+ ++ QAI +G D + LKE L L+++ Sbjct: 528 ALEKYAPEIVS--EEMTAQLEADM----QAIEDGKKKKEDVTEESREMLKEILSELKEKR 581 Query: 92 HEVCSSLKKLI 102 E+ L + Sbjct: 582 KEIGDHLAGSL 592 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.134 0.390 Gapped Lambda K H 0.267 0.0697 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,022,230 Number of extensions: 450859 Number of successful extensions: 931 Number of sequences better than 10.0: 1 Number of HSP's gapped: 908 Number of HSP's successfully gapped: 31 Length of query: 430 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 334 Effective length of database: 3,920,105 Effective search space: 1309315070 Effective search space used: 1309315070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.6 bits)