RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (430 letters)



>gnl|CDD|180077 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
          Length = 425

 Score =  692 bits (1789), Expect = 0.0
 Identities = 234/427 (54%), Positives = 304/427 (71%), Gaps = 3/427 (0%)

Query: 1   MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60
           MLDI+ IR+NPE +  AL KR      + +L LDE+ R L  ++E+++A RN+ S +IGQ
Sbjct: 1   MLDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60

Query: 61  AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120
           A  +G     +AL  E   LKE++  LE E  E+ + L++L+  IPN+P + VP+G   +
Sbjct: 61  AKRKGED--AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDED 118

Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180
           +N+ +R  G+        ++H+E+GE LG++DF+RA K+SG+RF VL G  A LERAL Q
Sbjct: 119 DNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQ 178

Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239
           FM+DLHT EHGYTEV  P LV +E+MYGTGQ+PKF +D++    D  +LIPT+EV LTNL
Sbjct: 179 FMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIEDDDLYLIPTAEVPLTNL 238

Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEH 299
           +  EI++ + LPL++T  +P FRSEAGSAGRDTRG++R HQF K ELV  T+ EDS+ E 
Sbjct: 239 HRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAEL 298

Query: 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359
           E + + AEEIL++L+L YRVV LCTGDLGFSA KTYDLEVWL  QN YREISSCS C +F
Sbjct: 299 EELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDF 358

Query: 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNN 419
           Q+RR N RYRD      +  HTLNGSG+AVGR L+AILENY  ADGSVTIP VLRPYM  
Sbjct: 359 QARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG 418

Query: 420 LAVIKKE 426
           L VI  +
Sbjct: 419 LEVIPPK 425


>gnl|CDD|161867 TIGR00414, serS, seryl-tRNA synthetase.  This model represents the
           seryl-tRNA synthetase found in most organisms. This
           protein is a class II tRNA synthetase, and is recognized
           by the pfam model tRNA-synt_2b. The seryl-tRNA
           synthetases of two archaeal species, Methanococcus
           jannaschii and Methanobacterium thermoautotrophicum,
           differ considerably and are included in a different
           model.
          Length = 418

 Score =  484 bits (1248), Expect = e-137
 Identities = 200/420 (47%), Positives = 284/420 (67%), Gaps = 5/420 (1%)

Query: 1   MLDIQWIRQNPEHLDIALKKRHL--EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQI 58
           MLD + +R NP+ +  +LK R L  +   E +++LD++ + L+ +IE+++A+RN  S QI
Sbjct: 1   MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60

Query: 59  GQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS 118
           G+A  +     ++ +K E   LKE+L  L      + + L+  +  IPN+P E VP+G  
Sbjct: 61  GKAKGQKK-DKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119

Query: 119 ANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178
             +N+ ++  G  P      + H+E+GE LG +DFDRA K++G+RF  L    A LERAL
Sbjct: 120 EEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERAL 179

Query: 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR-WLIPTSEVSLT 237
             FM+DL   ++GY E+  P LV +E++ GTGQ+PKF +D+F   D   +LIPT+EV LT
Sbjct: 180 INFMLDLL-EKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLEDTDLYLIPTAEVPLT 238

Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297
           NL+ +EI+E + LP+++T  +P FRSEAGS G+DT+G++R HQF K ELV   + E+S  
Sbjct: 239 NLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAE 298

Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357
           E E M S AE+IL+ L+L YRVV+LC+GDLGFSA K YDLEVW+ GQN YREISSCS C 
Sbjct: 299 ELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCT 358

Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417
           +FQ+RR+N RY+D N    K+ HTLNG+ +A+GR ++AILENY   DGSV IP VLR Y+
Sbjct: 359 DFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418


>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
          Length = 502

 Score =  261 bits (668), Expect = 3e-70
 Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 23/442 (5%)

Query: 2   LDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61
           +D +WIR N E + I ++ R+     E +L L E    L K++E +RA RN+ + ++   
Sbjct: 67  IDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKM--- 123

Query: 62  IAEGNL--SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119
             +G L  S   AL  E   LKE L  LE++  ++   L+     IPN+   +VP+G   
Sbjct: 124 --KGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGE- 180

Query: 120 NENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALG 179
           + + + + VG         ++H ++G+ L L DFD A ++SG++F  L      LE AL 
Sbjct: 181 DSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALV 240

Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG--RWLIPTSEVSLT 237
            + +     + G+T ++ P +VR   +   G  P+  +    + DG  + LI T+E+ + 
Sbjct: 241 NWTLS-EVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVG 299

Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297
            ++   I+   +LPL++   +  FR+EAG+AG  TRG+ R HQF K E+  I R E+S +
Sbjct: 300 GIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESES 359

Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357
            HE ++   E++   L LH++ + + T DLG  A + +D+E W+ G   Y EISS S C 
Sbjct: 360 FHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCT 419

Query: 358 NFQSRRMNSRYR--DP----------NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADG 405
           ++QSRR+  RYR  +P          +    KF HTLN +  AV R ++ +LENY   DG
Sbjct: 420 DYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDG 479

Query: 406 SVTIPTVLRPYMNNLAVIKKEH 427
           SV IP  LRP+M  L +IK + 
Sbjct: 480 SVVIPEPLRPFMGGLELIKPKS 501


>gnl|CDD|178282 PLN02678, PLN02678, seryl-tRNA synthetase.
          Length = 448

 Score =  255 bits (652), Expect = 2e-68
 Identities = 140/433 (32%), Positives = 228/433 (52%), Gaps = 19/433 (4%)

Query: 1   MLDIQWIRQ----NPEHLDIALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNS 55
           MLDI   R+    +PE +  + ++R    +  + +++LD++ R    +++ +R   N  +
Sbjct: 1   MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLN 60

Query: 56  AQIGQ-AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVP 114
            ++ +  IA+ +      L  ET  LK+++   E E  E  ++L   +  I N+  + VP
Sbjct: 61  KEVAKLKIAKED---ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVP 117

Query: 115 IGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHL 174
           +      N ++R+ G+K     L + H ++ E LG++D +R   ++G R   L G    L
Sbjct: 118 VSNDEANNAVVRTWGEKRQEPKL-KNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLL 176

Query: 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT---DGRWLIPT 231
            +AL  F +     + GYT +  P  +R + M    Q+ +F ++++  T   D ++LI T
Sbjct: 177 NQALINFGLAF-LRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIAT 235

Query: 232 SEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT- 290
           SE  L   +  + I+ K LP+R+   +  FR EAGS GRDT G+ R HQF K E   IT 
Sbjct: 236 SEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295

Query: 291 -REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYRE 349
               +S+  HE ML  +E+  + L + Y+VVS+ +G L  +A K YDLE W      YRE
Sbjct: 296 PNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRE 355

Query: 350 ISSCSTCGNFQSRRMNSRYRDP--NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407
           + SCS C ++QSRR+  RY     N ++ ++ H LN +  A  R L  ILENY   DG V
Sbjct: 356 LVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDG-V 414

Query: 408 TIPTVLRPYMNNL 420
            +P VL+P+M  +
Sbjct: 415 RVPEVLQPFMGGI 427


>gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II.
           Prolyl-tRNA synthetase is a class II tRNA synthetase and
           is recognized by pfam model tRNA-synt_2b, which
           recognizes tRNA synthetases for Gly, His, Ser, and Pro.
           The prolyl-tRNA synthetases are divided into two widely
           divergent groups. This group includes enzymes from
           Escherichia coli, Bacillus subtilis, Aquifex aeolicus,
           the spirochete Treponema pallidum, Synechocystis
           PCC6803, and one of the two prolyL-tRNA synthetases of
           Saccharomyces cerevisiae. The other group includes the
           Pro-specific domain of a human multifunctional tRNA
           ligase and the prolyl-tRNA synthetases from the Archaea,
           the Mycoplasmas, and the spirochete Borrelia
           burgdorferi.
          Length = 568

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 189 EHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GR--WLIPTSEVSLTNLYSHEI 244
           + G  EV  P L   E    +G+   +  ++    D  GR   L PT E  +T+L  +EI
Sbjct: 63  KDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEI 122

Query: 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFTEHERML 303
              K LPL    +   FR E     R   G++R  +F   +  S  + EE     +++M 
Sbjct: 123 KSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMY 178

Query: 304 SCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335
                I  RL L +R V   +G +G SA   +
Sbjct: 179 QAYSNIFSRLGLDFRPVQADSGAIGGSASHEF 210


>gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase.  This model represents
           the threonyl-tRNA synthetase found in most organisms.
           This protein is a class II tRNA synthetase, and is
           recognized by the pfam model tRNA-synt_2b. Note that B.
           subtilis has closely related isozymes thrS and thrZ. The
           N-terminal regions are quite dissimilar between archaeal
           and eubacterial forms, while some eukaryotic forms are
           missing sequence there altogether..
          Length = 563

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 11/195 (5%)

Query: 136 HLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEV 195
              R+H ++G+ L L  F+      G          A +   L  F+        GY EV
Sbjct: 167 AKKRDHRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKY-GYMEV 222

Query: 196 SAPLLVRDEAMYGTGQIPKFADDMFCTTDGRW----LIPTSEVSLTNLYSHEIIESKSLP 251
             P++   E    +G    + + MF  T+       L P +      ++   +   + LP
Sbjct: 223 ETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLP 282

Query: 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311
           LR   L  S R E         G++R   F + +      E+    E +      +++  
Sbjct: 283 LRIAELGYSHRYEQSGE---LHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339

Query: 312 RLDLHYRVVSLCTGD 326
                +    L T D
Sbjct: 340 DFGFSFDKYELSTRD 354


>gnl|CDD|179183 PRK00960, PRK00960, seryl-tRNA synthetase; Provisional.
          Length = 517

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 51/217 (23%)

Query: 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI------------PKFADD 218
           +  L RA  + +I+      G+ E   P L+  E MY    +            PK   +
Sbjct: 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPE 281

Query: 219 MFCTTDGRWLIPTSEVSLTNL----------------------YSHEIIESKSLPLR-FT 255
            F       ++   EV +  L                      +  E ++   LP++ F 
Sbjct: 282 YF-EEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFD 340

Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315
               ++R E G A     G+ R ++F + E+V +   E      + +L  A  + ++LDL
Sbjct: 341 RSGWTYRWEGGGA----HGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDL 396

Query: 316 HY-RVVS----------LCTGDLGFSACKTYDLEVWL 341
            Y R V           L    + F     Y++E+WL
Sbjct: 397 EYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWL 433


>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii
           family.  The seryl-tRNA synthetases from a few of the
           Archaea, represented by this model, are very different
           from the set of mutually more closely related seryl-tRNA
           synthetases from Eubacteria, Eukaryotes, and other
           Archaea. Although distantly homologous, the present set
           differs enough not to be recognized by the pfam model
           tRNA-synt_2b that recognizes the remainder of seryl-tRNA
           synthetases among oither class II amino-acyl tRNA
           synthetases.
          Length = 520

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 38/180 (21%)

Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGR------ 226
           L RAL +F I+    + G+ E   P L+  + M     +    + M+ C    R      
Sbjct: 225 LFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFE 284

Query: 227 ----WLIPTSEVSLTNL----------------------YSHEIIESKSLPLRFTTLAP- 259
                LI   E+ +  L                      +  E+I+++  P++F   +  
Sbjct: 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGW 344

Query: 260 SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319
           ++R EAG A    +G+ R H+F + E V I   E++    ++ L  AE+    LDL +  
Sbjct: 345 TYRWEAGGA----KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWT 400


>gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
          Length = 638

 Score = 37.8 bits (89), Expect = 0.006
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT--DGRWL 228
           R L +++      + GY EV  P ++ D  ++ T G    + ++MF TT  DG   
Sbjct: 274 RELERYIRRKLR-KAGYQEVKTPQIL-DRELWETSGHWDHYRENMFPTTESDGEEY 327


>gnl|CDD|161863 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I.
           Prolyl-tRNA synthetase is a class II tRNA synthetase and
           is recognized by pfam model tRNA-synt_2b, which
           recognizes tRNA synthetases for Gly, His, Ser, and Pro.
           The prolyl-tRNA synthetases are divided into two widely
           divergent families. This family includes the archaeal
           enzyme, the Pro-specific domain of a human
           multifunctional tRNA ligase, and the enzyme from the
           spirochete Borrelia burgdorferi. The other family
           includes enzymes from Escherichia coli, Bacillus
           subtilis, Synechocystis PCC6803, and one of the two
           prolyL-tRNA synthetases of Saccharomyces cerevisiae.
          Length = 472

 Score = 35.9 bits (83), Expect = 0.020
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 180 QFMIDLHTSEHGYTEVSAPLLV-RDEAMYGTGQIPKFADDMFCTTDGRW--------LIP 230
           Q ++     E G+ EV  P+L+   E       I  F  +++  T G          L P
Sbjct: 45  QKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRP 104

Query: 231 TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WK 283
           TSE ++  ++   +     LPL+       FR E     + TR  LR  +F W+
Sbjct: 105 TSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYET----KHTRPFLRTREFTWQ 154


>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
          Length = 575

 Score = 34.4 bits (80), Expect = 0.053
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
           R+H ++G+ L L  F       G    V     A + R +  ++   H  + GY  V  P
Sbjct: 176 RDHRKLGKELDLFSFP---DEIGPGLPVWHPKGAIIRREIEDYLRKEHL-KRGYEFVYTP 231

Query: 199 LLVRDEAMYGTGQIPKFADDMF 220
            + + +    +G +  + ++MF
Sbjct: 232 HIGKSDLWKTSGHLDNYKENMF 253


>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
          Length = 562

 Score = 33.1 bits (76), Expect = 0.15
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 1   MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKI-------EDIRARRNS 53
           +LDI  +      +D   K +  E   + I +LD K   + ++I       E+ R +   
Sbjct: 159 LLDISVL----SEMDKLNKDKIRELNQQ-IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE 213

Query: 54  NSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL 101
           N A+  Q   +  +     +K E   L ++L  L  +  +  ++L KL
Sbjct: 214 NIARK-QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260


>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
          Length = 639

 Score = 32.0 bits (73), Expect = 0.34
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 31/194 (15%)

Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
           R H ++G+ L L  F  + +  G  F +  G +   E  L  F+ ++   E+ Y EV  P
Sbjct: 245 RNHRKLGKELELFMF--SEEAPGMPFYLPKGQIIRNE--LEAFLREIQK-EYNYQEVRTP 299

Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTN-------------LYSHEII 245
            ++  E    +G    + D+M+           SEV   +             ++ +++ 
Sbjct: 300 FMMNQELWERSGHWDHYKDNMY----------FSEVDNKSFALKPMNCPGHMLMFKNKLH 349

Query: 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSC 305
             + LP+R        R E   A     G+LR   F + +       +    E + +++ 
Sbjct: 350 SYRELPIRMCEFGQVHRHEFSGA---LNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQ 406

Query: 306 AEEILKRLDLHYRV 319
            + + K     Y V
Sbjct: 407 IDYVYKTFGFEYEV 420


>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
          Length = 206

 Score = 31.2 bits (71), Expect = 0.55
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 33  LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEK 89
           L+ + + L  K+ +I    N  +A++ Q +A  + S+++ LK E   LK QL + +K
Sbjct: 98  LENQVKTLTDKLNNIDNTWNQRTAEMQQKVA-QSDSVINGLKEENQKLKNQLIVAQK 153


>gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
           single chain form.  This model represents a
           single-molecule form of
           phosphoribosylformylglycinamidine synthase, also called
           FGAM synthase, an enzyme of purine de novo biosynthesis.
           This form is found mostly in eukaryotes and
           Proteobacteria. In Bacillus subtilis PurL (FGAM synthase
           II) and PurQ (FGAM synthase I), homologous to different
           parts of this model, perform the equivalent function;
           the unrelated small protein PurS is also required and
           may be a third subunit.
          Length = 1310

 Score = 29.0 bits (65), Expect = 2.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 24  EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVD 71
           E Q  Y+L +  +N  +   I     R     A +G A  +G L+LVD
Sbjct: 547 ESQERYVLLVRAENLEIFTAIC---ERERCPFAVVGTATGDGRLTLVD 591


>gnl|CDD|178147 PLN02532, PLN02532, asparagine-tRNA synthetase.
          Length = 633

 Score = 28.7 bits (64), Expect = 2.9
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 29/115 (25%)

Query: 215 FADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRG 274
           F+   + T  GR  + +   +L N+Y               T  P FR++   + R    
Sbjct: 368 FSRPTYLTVSGRLHLESYACALGNVY---------------TFGPRFRADRIDSARHLAE 412

Query: 275 MLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF 329
           M      W  E+      E +F+E E  ++CAE+  K   L   V+  C+ D+ F
Sbjct: 413 M------WMVEV------EMAFSELEDAMNCAEDYFKF--LCKWVLENCSEDMKF 453


>gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
           Provisional.
          Length = 1290

 Score = 28.6 bits (65), Expect = 3.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 24  EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET 77
           E Q  Y+L++  ++   ++  E I  R     A +G+A  E +L+L D+  +  
Sbjct: 541 ESQERYVLAIAPED---LELFEAICERERCPFAVVGEATEERHLTLEDSHFDNK 591


>gnl|CDD|179108 PRK00748, PRK00748,
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase; Validated.
          Length = 233

 Score = 28.5 bits (65), Expect = 3.9
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 41  IKKIEDIRARRNSNSAQ---IGQAIAEGNLSLVDA 72
           +  ++DI+A +   + +   +G+A+ EG   L +A
Sbjct: 199 VSSLDDIKALKGLGAVEGVIVGRALYEGKFDLAEA 233


>gnl|CDD|173415 PTZ00124, PTZ00124, adenosine deaminase; Provisional.
          Length = 362

 Score = 27.9 bits (62), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 299 HERMLSCAEEILKRLDLHYRVVSLCTGDLGFSA 331
           H+ ++   +E ++ LD    V  LC GD G  A
Sbjct: 144 HQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDA 176


>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
          Length = 326

 Score = 27.9 bits (63), Expect = 5.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 31  LSLDEKNRILIKKIEDIRA---RRNSNSAQIGQAIAEGN----LSLVDAL--KNE 76
           L+L  +N       E+++A       NS Q+  A+ +GN    L+L+D L   NE
Sbjct: 176 LALYAENSTKPISAEEVKALVSNTTQNSLQLADALLQGNTGKALALLDDLLDANE 230


>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase.
          Length = 487

 Score = 27.8 bits (62), Expect = 6.2
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 191 GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GR--WLIPTSEVSLTNLYSHEIIE 246
           G+ EV AP+L   E +Y      +  D ++   D  GR   L P    SL  L    +++
Sbjct: 102 GFEEVDAPVLES-EELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARL----VLQ 156

Query: 247 ---SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289
              S SLPL++  +   +R E     R TRG  R+H  W  +++ +
Sbjct: 157 KGKSLSLPLKWFAIGQCWRYE-----RMTRGRRREHYQWNMDIIGV 197


>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
          Length = 286

 Score = 27.6 bits (62), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 167 LTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208
           L  HLA L R+LG+  I    +     EV   L+ R+    G
Sbjct: 46  LDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRVREG 87


>gnl|CDD|165240 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
          Length = 238

 Score = 27.4 bits (61), Expect = 7.2
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 71  DALKNETSTLKEQLPILEKEE-------HEVCSSLKKLISCIPNVPLE 111
             LKN+ S  K     + KEE       ++   + KK +  IP+V  E
Sbjct: 117 KILKNKPSNDKINYIYMRKEEDMFYAIINKKGKNYKKFLKTIPSVLSE 164


>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
          Length = 822

 Score = 27.3 bits (61), Expect = 7.4
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 32  SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEE 91
           +L++    ++   E++ A+  ++     QAI +G     D  +     LKE L  L+++ 
Sbjct: 528 ALEKYAPEIVS--EEMTAQLEADM----QAIEDGKKKKEDVTEESREMLKEILSELKEKR 581

Query: 92  HEVCSSLKKLI 102
            E+   L   +
Sbjct: 582 KEIGDHLAGSL 592


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,022,230
Number of extensions: 450859
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 31
Length of query: 430
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 334
Effective length of database: 3,920,105
Effective search space: 1309315070
Effective search space used: 1309315070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)