RPSBLAST alignment of GI: 254780680 and protein with PDBid: 1nj1

>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501

 Score =  144 bits (365), Expect = 3e-35
 Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 32/319 (10%)

Query: 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARF 164
           +P     + PI    N     R  G+K +    S     I E   ++D        G   
Sbjct: 15  VPRGSHMQKPIKKDPN-----RYHGEKMTE--FSEWFHNILEEAEIIDQRYPV--KG--M 63

Query: 165 SVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT 223
            V   H   + +   + +  +   +  + EV  PLLV ++ +      +  F D+++  T
Sbjct: 64  HVWMPHGFMIRKNTLKILRRIL--DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVT 121

Query: 224 DGR--------WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGM 275
            G          L PTSE  +  +++  +     LP+RF  +  +FR E     + TR +
Sbjct: 122 HGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET----KHTRPL 177

Query: 276 LRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACK 333
           +R  +    +          ++  + ER +   +E    L + Y +      D    +  
Sbjct: 178 IRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEY 237

Query: 334 TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL 393
           T   +  +       +I +    G   +R    ++  P         T  G      R +
Sbjct: 238 TVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD---RVI 293

Query: 394 IAILENYLNADGSVTIPTV 412
            +++  + +  G    P V
Sbjct: 294 ASVIAIHGDESGLCLPPDV 312