RPSBLAST alignment of GI: 254780680 and protein with PDBid: 1nyr

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645

 Score = 82.0 bits (202), Expect = 3e-16
 Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 52/333 (15%)

Query: 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSA 197
            R+H +IG+ L L    +   L GA   +   + A + R + ++++D      GY  V  
Sbjct: 240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEV-SMGYDHVYT 295

Query: 198 PLLVRDEAMYGTGQIPKFADDMFCTTDGRW-----LIPTSEVSLTNLYSHEIIESKSLPL 252
           P+L   +    +G    + +DMF            L P +      +Y+++    + LP+
Sbjct: 296 PVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPI 355

Query: 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312
           R   L    R EA  A     G+ R       +     R +    E +R+++   ++ K 
Sbjct: 356 RIAELGTMHRYEASGA---VSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKD 412

Query: 313 LDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYR------------------------ 348
                    L   D         D ++W   +N+ +                        
Sbjct: 413 FGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL 472

Query: 349 -----------EISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397
                      E  S +        R +  Y   + +  +      G    + R +  + 
Sbjct: 473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLT 532

Query: 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEHILE 430
           E           PT L P    +  +  +   +
Sbjct: 533 EET-----KGAFPTWLAPKQVQIIPVNVDLHYD 560