RPSBLAST alignment of GI: 254780680 and protein with PDBid: 2dq0
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455
Score = 404 bits (1040), Expect = e-113
Identities = 160/450 (35%), Positives = 251/450 (55%), Gaps = 27/450 (6%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57
MLDI+ IR+NPE + L KR + ++ IL LD + R +K+I +R RN + +
Sbjct: 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60
Query: 58 IGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117
IG+ +G VD L ++ + +++ LE E E+ + + +PN+ VP+G
Sbjct: 61 IGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118
Query: 118 SANENILIRSVGKKPSAIHLS--------------------REHFEIGEALGLMDFDRAT 157
N+N+ IR GK + H ++ E LG DF RA
Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAA 178
Query: 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217
K+SG+RF L + L+ AL +F +D E G+T V P +VR G+ F D
Sbjct: 179 KVSGSRFYYLLNEIVILDLALIRFALDRLI-EKGFTPVIPPYMVRRFVEEGSTSFEDFED 237
Query: 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGML 276
++ + +LIPT+E L ++++EI++ K LPL + ++P FR EAG+AG+DT+G+
Sbjct: 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIF 297
Query: 277 RQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYD 336
R HQF K E +R E+S+ HE+++ AEE+ + L++ YRVV++CTGDLG+ A K YD
Sbjct: 298 RVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYD 357
Query: 337 LEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396
+E W+ GQ +RE+ S S C ++Q+RR+N R+RD + ++ HTLN + +A R ++AI
Sbjct: 358 IEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAI 417
Query: 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426
LEN+ DG+V IP VL Y ++ E
Sbjct: 418 LENHQEEDGTVRIPKVLWKYTGFKEIVPVE 447