RPSBLAST alignment of GI: 254780680 and protein with PDBid: 2dq0

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455
 Score =  404 bits (1040), Expect = e-113
 Identities = 160/450 (35%), Positives = 251/450 (55%), Gaps = 27/450 (6%)

Query: 1   MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57
           MLDI+ IR+NPE +   L KR    + ++   IL LD + R  +K+I  +R  RN  + +
Sbjct: 1   MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60

Query: 58  IGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117
           IG+   +G    VD L  ++  + +++  LE E  E+   +   +  +PN+    VP+G 
Sbjct: 61  IGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118

Query: 118 SANENILIRSVGKKPSAIHLS--------------------REHFEIGEALGLMDFDRAT 157
             N+N+ IR  GK                            + H ++ E LG  DF RA 
Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAA 178

Query: 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217
           K+SG+RF  L   +  L+ AL +F +D    E G+T V  P +VR     G+     F D
Sbjct: 179 KVSGSRFYYLLNEIVILDLALIRFALDRLI-EKGFTPVIPPYMVRRFVEEGSTSFEDFED 237

Query: 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGML 276
            ++    +  +LIPT+E  L  ++++EI++ K LPL +  ++P FR EAG+AG+DT+G+ 
Sbjct: 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIF 297

Query: 277 RQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYD 336
           R HQF K E    +R E+S+  HE+++  AEE+ + L++ YRVV++CTGDLG+ A K YD
Sbjct: 298 RVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYD 357

Query: 337 LEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396
           +E W+ GQ  +RE+ S S C ++Q+RR+N R+RD   +  ++ HTLN + +A  R ++AI
Sbjct: 358 IEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAI 417

Query: 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426
           LEN+   DG+V IP VL  Y     ++  E
Sbjct: 418 LENHQEEDGTVRIPKVLWKYTGFKEIVPVE 447