RPSBLAST alignment of GI: 254780680 and protein with PDBid: 3lss

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score =  409 bits (1051), Expect = e-115
 Identities = 138/468 (29%), Positives = 213/468 (45%), Gaps = 46/468 (9%)

Query: 1   MLDIQWIRQNPEHLDI--ALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNSAQ 57
           +LDIQ  R       I  + ++R  +P   + I+  D+K R      E  +   N  S  
Sbjct: 7   VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKA 66

Query: 58  IGQAIAEGNLS---------------------------LVDALKNETSTLKEQLPILEKE 90
           +G                                     V  LK  +  L +Q+  L KE
Sbjct: 67  VGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKE 126

Query: 91  EHEVCSSLKKLISCIPNVPLEEVPIGTSANEN-ILIRSVGKKPSAIHLSREHFEIGEALG 149
             ++     KL+  + N+  E VPI         ++R+ G       L+  H  I E LG
Sbjct: 127 AQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLN--HVSIMERLG 184

Query: 150 LMDFDR-ATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208
           +MD  +  T ++G R  VL G L  L+ AL  + +D    + GYT    P  +  + M  
Sbjct: 185 MMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLD-FLVKRGYTPFYPPFFLNRDVMGE 243

Query: 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA 265
             Q+ +F ++++  +   D ++LI TSE+ +   +          PL++  ++  FR EA
Sbjct: 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEA 303

Query: 266 GSAGRDTRGMLRQHQFWKCELVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLC 323
           G+ GRDT G+ R HQF K E   +      +S+   E M++ +EE  K L L YRVV++C
Sbjct: 304 GAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363

Query: 324 TGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNS-----KSLKF 378
           +G L  +A K YDLE W      +RE+ SCS C ++QS+ +N RY             ++
Sbjct: 364 SGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEY 423

Query: 379 THTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKE 426
            H LNG+  A+ R +  I ENY   +G V IP VLRPYM  + +I+ E
Sbjct: 424 CHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFE 470