RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(430 letters)
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 409 bits (1051), Expect = e-115
Identities = 138/468 (29%), Positives = 213/468 (45%), Gaps = 46/468 (9%)
Query: 1 MLDIQWIRQNPEHLDI--ALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNSAQ 57
+LDIQ R I + ++R +P + I+ D+K R E + N S
Sbjct: 7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKA 66
Query: 58 IGQAIAEGNLS---------------------------LVDALKNETSTLKEQLPILEKE 90
+G V LK + L +Q+ L KE
Sbjct: 67 VGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKE 126
Query: 91 EHEVCSSLKKLISCIPNVPLEEVPIGTSANEN-ILIRSVGKKPSAIHLSREHFEIGEALG 149
++ KL+ + N+ E VPI ++R+ G L+ H I E LG
Sbjct: 127 AQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLN--HVSIMERLG 184
Query: 150 LMDFDR-ATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208
+MD + T ++G R VL G L L+ AL + +D + GYT P + + M
Sbjct: 185 MMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLD-FLVKRGYTPFYPPFFLNRDVMGE 243
Query: 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA 265
Q+ +F ++++ + D ++LI TSE+ + + PL++ ++ FR EA
Sbjct: 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEA 303
Query: 266 GSAGRDTRGMLRQHQFWKCELVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLC 323
G+ GRDT G+ R HQF K E + +S+ E M++ +EE K L L YRVV++C
Sbjct: 304 GAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363
Query: 324 TGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNS-----KSLKF 378
+G L +A K YDLE W +RE+ SCS C ++QS+ +N RY ++
Sbjct: 364 SGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEY 423
Query: 379 THTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKE 426
H LNG+ A+ R + I ENY +G V IP VLRPYM + +I+ E
Sbjct: 424 CHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFE 470
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 404 bits (1040), Expect = e-113
Identities = 160/450 (35%), Positives = 251/450 (55%), Gaps = 27/450 (6%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57
MLDI+ IR+NPE + L KR + ++ IL LD + R +K+I +R RN + +
Sbjct: 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60
Query: 58 IGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117
IG+ +G VD L ++ + +++ LE E E+ + + +PN+ VP+G
Sbjct: 61 IGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118
Query: 118 SANENILIRSVGKKPSAIHLS--------------------REHFEIGEALGLMDFDRAT 157
N+N+ IR GK + H ++ E LG DF RA
Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAA 178
Query: 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217
K+SG+RF L + L+ AL +F +D E G+T V P +VR G+ F D
Sbjct: 179 KVSGSRFYYLLNEIVILDLALIRFALDRLI-EKGFTPVIPPYMVRRFVEEGSTSFEDFED 237
Query: 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGML 276
++ + +LIPT+E L ++++EI++ K LPL + ++P FR EAG+AG+DT+G+
Sbjct: 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIF 297
Query: 277 RQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYD 336
R HQF K E +R E+S+ HE+++ AEE+ + L++ YRVV++CTGDLG+ A K YD
Sbjct: 298 RVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYD 357
Query: 337 LEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396
+E W+ GQ +RE+ S S C ++Q+RR+N R+RD + ++ HTLN + +A R ++AI
Sbjct: 358 IEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAI 417
Query: 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426
LEN+ DG+V IP VL Y ++ E
Sbjct: 418 LENHQEEDGTVRIPKVLWKYTGFKEIVPVE 447
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 3.00A {Aquifex aeolicus
VF5}
Length = 425
Score = 400 bits (1029), Expect = e-112
Identities = 207/429 (48%), Positives = 283/429 (65%), Gaps = 7/429 (1%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQS--EYILSLDEKNRILIKKIEDIRARRNSNSAQI 58
M+DI IR+ P+++ L R E S + +L LD++ R +IK++E +R+ RN S +I
Sbjct: 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEI 60
Query: 59 GQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS 118
G+ EG ++N LKE++ LE+E +V LK + IPN+P VP+G
Sbjct: 61 GKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGED 118
Query: 119 ANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178
+N+ +R G+ + H+EIGE LG++DF R KLSG+RF+V+ G A LERAL
Sbjct: 119 EKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERAL 178
Query: 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLT 237
FM+DLHT + GY E+ P LV+ E + GTGQ+PKF +D++ C D +LIPT+EV LT
Sbjct: 179 INFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT 237
Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297
NLY EI++ ++LP+ T P +R EAG+ G+D RG++RQHQF K ELV I + S+
Sbjct: 238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYD 297
Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357
E E+++ AEE+L+ L L YRVV LCTGDLGFSA KTYD+EVW QN YREISSCS C
Sbjct: 298 ELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCE 357
Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417
+FQ+RRMN+R++D + +F HTLNGSG+AVGR L AILENY DGSV +P VLR Y+
Sbjct: 358 DFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYV 417
Query: 418 NNLAVIKKE 426
VI+ E
Sbjct: 418 GT-DVIRPE 425
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 375 bits (963), Expect = e-104
Identities = 126/349 (36%), Positives = 189/349 (54%), Gaps = 7/349 (2%)
Query: 73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP 132
+ L+ +L LE + + L+ L+ +P P P+G N I+ VG P
Sbjct: 178 MLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEA-NREIKRVGGPP 236
Query: 133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGY 192
+H + E G + R +++SG+R L G LA E AL +F +D G+
Sbjct: 237 EFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMA-RRGF 294
Query: 193 TEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNLYSHEIIESKSLP 251
++ P R++A GTG P + D ++ +L T+EV L L+S EI+ ++LP
Sbjct: 295 LPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALP 354
Query: 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLSCAEEI 309
LR+ AP+FRSEAGS G+D RG++R HQF K E +T E S + +L AEEI
Sbjct: 355 LRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEI 414
Query: 310 LKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR 369
L+ L+L YR+V + TGD+G + D+EV+L + YRE SCS ++Q+RR N RYR
Sbjct: 415 LRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR 474
Query: 370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMN 418
DP + +++ +TLN + +A R L +LEN+ DG V +P L PYM
Sbjct: 475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMG 522
Score = 27.6 bits (61), Expect = 5.5
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60
M+D++ +RQ PE A++++ + E +L++DE+ L K+ E I ++ S + +
Sbjct: 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQ---LHKQQEVIADKQMSVKEDLDK 57
Query: 61 AI 62
Sbjct: 58 VE 59
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 369 bits (949), Expect = e-103
Identities = 124/444 (27%), Positives = 213/444 (47%), Gaps = 20/444 (4%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57
+LD++ + PE AL R E +S+ I+S ++ R L ++I + + + +
Sbjct: 40 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEA 99
Query: 58 IGQAIAEGNLS------LVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLE 111
+ + + S +L+ +++QL +L +E ++ +PN
Sbjct: 100 VRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHP 159
Query: 112 EVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHL 171
+VP+G ++ ++ VG KP+ R H EI E L ++ R + +SG R L G
Sbjct: 160 DVPVGDE-SQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAG 218
Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-----DGR 226
A L+ L F ++ +T ++ P L+R G G P +
Sbjct: 219 ALLQHGLVNFTLNKLIHRG-FTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDL 277
Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286
L T+EV L + + + LP+R + +R+E + G++ G+ R H F K E+
Sbjct: 278 NLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRVHHFTKVEM 336
Query: 287 VSITR--EEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344
+T E S E LS EIL L LH+RV+ + T +LG A + +D+E W+ G+
Sbjct: 337 FGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR 396
Query: 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNAD 404
+ E++S S C +FQSRR++ ++ + L+F HT+N +G AV R LIA+LE+Y D
Sbjct: 397 GRFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNATGCAVPRLLIALLESYQQKD 455
Query: 405 GSVTIPTVLRPYMNNLAVIKKEHI 428
GSV +P L+PY+ + H+
Sbjct: 456 GSVLVPPALQPYLGTDRITTPTHV 479
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A
{Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB:
1ser_A* 1set_A* 1sry_A
Length = 421
Score = 311 bits (797), Expect = 2e-85
Identities = 136/421 (32%), Positives = 212/421 (50%), Gaps = 11/421 (2%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60
M+D++ +RQ PE A++++ + E +L+LD + + L K++++++ RN + ++ +
Sbjct: 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60
Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120
A E +AL L E+ LE+ E + L+ L+ +P P P+G
Sbjct: 61 APPEE----KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEA 116
Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180
+ R G P R +++SG+R L G LA E AL +
Sbjct: 117 NREIKRVGG--PPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLR 174
Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239
F +D GTG P + D ++ +L T+EV L L
Sbjct: 175 FAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL 233
Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFT 297
+S EI+ ++LPLR+ AP+FRSEAGS G+D RG++R HQF K E + E S
Sbjct: 234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293
Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357
+ +L AEEIL+ L+L YR+V + TGD+G + D+EV+L + YRE SCS
Sbjct: 294 AFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALL 353
Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417
++Q+RR N RYRDP + ++ +TLN + +A R L +LEN+ DG V +P L PYM
Sbjct: 354 DWQARRANLRYRDPEGRV-RYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412
Query: 418 N 418
Sbjct: 413 G 413
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 242 bits (618), Expect = 2e-64
Identities = 57/433 (13%), Positives = 116/433 (26%), Gaps = 73/433 (16%)
Query: 40 LIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEK--EEHEVCSS 97
+ K I R + I + A+ L ++ ++ E LE E E+
Sbjct: 104 ALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMK-- 161
Query: 98 LKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIH--LSREHFEIGEALGLMD-FD 154
VP + + E + + + + EH + M
Sbjct: 162 --------NRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEG 213
Query: 155 RATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK 214
+ S + A + R + +++ GY E+ P LV E +G
Sbjct: 214 WLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKG 273
Query: 215 FADDMFCTTDGR----------------------------------WLIPTSEVSLTNLY 240
+++ + +
Sbjct: 274 VYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYV 333
Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300
+ E + ++ +P++ + + G+ R +F + E+V I +E+ E
Sbjct: 334 AGETLPNEEIPVKVFDRSGTSHRYESGG---IHGIERVDEFHRIEIVWIGTKEEVLKCAE 390
Query: 301 RMLSCAEEILK-RLDLHYRVVSL---------CTGDLGFSACKTYDLEVWLAGQNLYREI 350
+ I LD+ +R + G + T D E L + E
Sbjct: 391 ELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEW 450
Query: 351 SSCST---CGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407
G+ + N + + + SGV + R L
Sbjct: 451 LEFQNVSINGDKYPKGFNVKLQSG-----DELWS-GCSGVGLERWAAVFLAQKGLDPA-- 502
Query: 408 TIPTVLRPYMNNL 420
P R + +
Sbjct: 503 NWPEEFRNRVGEM 515
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Length = 346
Score = 233 bits (596), Expect = 5e-62
Identities = 46/323 (14%), Positives = 89/323 (27%), Gaps = 61/323 (18%)
Query: 141 HFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200
+ + + AR ++ + L + E G + P +
Sbjct: 37 ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALI------TSHREAGTEALRFPPV 90
Query: 201 VRDEAMYGTGQIPKFADDMFCTTDGR----------------------------WLIPTS 232
+ + +G + F + + C L P +
Sbjct: 91 MSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAA 150
Query: 233 EVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292
+ + + K LRF A FR E + + R F E V I
Sbjct: 151 CYPVYPIAASRGPLPK-GGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTP 203
Query: 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCT---GDLGFSACKT-------YDLEVWLA 342
+D ER + A+ I + L L +RV G +G + ++L + L
Sbjct: 204 DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLR 263
Query: 343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLN 402
+ S + + + + HT + R +A+ +
Sbjct: 264 SEEQPTACMSFNYHREHFGTTWGIQDANG-----EPAHT-GCVAFGMDRLAVAMFHTHGT 317
Query: 403 ADG----SVTIPTVLRPYMNNLA 421
V L+P++ A
Sbjct: 318 DLSAWPAKVRDILGLQPHVAAGA 340
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, Pro(Cys)RS, translation,
ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc
50803}
Length = 518
Score = 145 bits (367), Expect = 2e-35
Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 25/296 (8%)
Query: 132 PSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHG 191
+ + I +A L+D + G V + +E A+ + + + + G
Sbjct: 19 KTRDTFADWFDAIMDAAELVDRRYP--VKG--CVVFRPYGFFMENAIMRLCEEEYA-KVG 73
Query: 192 YTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTTDGR--------WLIPTSEVSLTNLYSH 242
+++ P ++ + + I F + F G L PTSE ++ +++S
Sbjct: 74 ISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133
Query: 243 EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFTEHE 300
+ K LPL+ FR E ++T+ ++R + E T E+ +
Sbjct: 134 WVRSYKDLPLKIHQTCTIFRHET----KNTKPLIRVREIHWNEAHCCHATAEDAVSQLSD 189
Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360
L + + D A + +V + + + G
Sbjct: 190 YWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVM-PCGRVLQTAGIHNLGQRF 248
Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416
S + Y + ++S+ T G R L L + ++ G V +P ++ P
Sbjct: 249 SSTFDILYANKANESVHPYLTCAGIS---TRVLACALSIHGDSGGLV-LPPLIAPI 300
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase; HET: 5CA; 2.55A
{Methanothermobacterthermautotrophicus} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 144 bits (365), Expect = 3e-35
Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 32/319 (10%)
Query: 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARF 164
+P + PI N R G+K + S I E ++D G
Sbjct: 15 VPRGSHMQKPIKKDPN-----RYHGEKMTE--FSEWFHNILEEAEIIDQRYPV--KG--M 63
Query: 165 SVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT 223
V H + + + + + + + EV PLLV ++ + + F D+++ T
Sbjct: 64 HVWMPHGFMIRKNTLKILRRIL--DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVT 121
Query: 224 DGR--------WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGM 275
G L PTSE + +++ + LP+RF + +FR E + TR +
Sbjct: 122 HGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET----KHTRPL 177
Query: 276 LRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACK 333
+R + + ++ + ER + +E L + Y + D +
Sbjct: 178 IRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEY 237
Query: 334 TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL 393
T + + +I + G +R ++ P T G R +
Sbjct: 238 TVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD---RVI 293
Query: 394 IAILENYLNADGSVTIPTV 412
+++ + + G P V
Sbjct: 294 ASVIAIHGDESGLCLPPDV 312
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 130 bits (328), Expect = 6e-31
Identities = 39/221 (17%), Positives = 68/221 (30%), Gaps = 15/221 (6%)
Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
R+H +IG+ L L + R L F+ E+ Y EV P
Sbjct: 1 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLK-EYQYQEVKGP 55
Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFT 255
++ TG + D MF T+ + P + +++ + + LPLR
Sbjct: 56 FMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMA 115
Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315
R+E + G++R F + + EE E + ++
Sbjct: 116 EFGSCHRNEPSGS---LHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGF 172
Query: 316 HYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356
VV L T E+W + +
Sbjct: 173 EKIVVKLSTRPEKRIGSD----EMWDRAEADLAVALEENNI 209
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 98.3 bits (244), Expect = 3e-21
Identities = 50/294 (17%), Positives = 105/294 (35%), Gaps = 24/294 (8%)
Query: 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVR 202
+I E + D K G V + + R + + +L E G+ E P+L+
Sbjct: 13 DILEKAEIYDVRYPIK--G--CGVYLPYGFKIRRYTFEIIRNLLD-ESGHDEALFPMLIP 67
Query: 203 DEAMYGTGQ-IPKFADDMFCTTDGR--------WLIPTSEVSLTNLYSHEIIESKSLPLR 253
++ + + I F D+++ T G L PTSE + + + LP++
Sbjct: 68 EDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIK 127
Query: 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILK 311
+ +FR E + TR ++R + + + +E++ + + +S ++
Sbjct: 128 IYQIVNTFRYET----KHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFD 183
Query: 312 RLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDP 371
L + Y + D A T + +I++ G S+ + P
Sbjct: 184 TLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGR-TMQIATVHNLGQNFSKTFEIIFETP 242
Query: 372 NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425
T R + +I+ + + G + P V + + +I K
Sbjct: 243 TGDKDYAYQT---CYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFK 293
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 82.0 bits (202), Expect = 3e-16
Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 52/333 (15%)
Query: 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSA 197
R+H +IG+ L L + L GA + + A + R + ++++D GY V
Sbjct: 240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEV-SMGYDHVYT 295
Query: 198 PLLVRDEAMYGTGQIPKFADDMFCTTDGRW-----LIPTSEVSLTNLYSHEIIESKSLPL 252
P+L + +G + +DMF L P + +Y+++ + LP+
Sbjct: 296 PVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPI 355
Query: 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312
R L R EA A G+ R + R + E +R+++ ++ K
Sbjct: 356 RIAELGTMHRYEASGA---VSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKD 412
Query: 313 LDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYR------------------------ 348
L D D ++W +N+ +
Sbjct: 413 FGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL 472
Query: 349 -----------EISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397
E S + R + Y + + + G + R + +
Sbjct: 473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLT 532
Query: 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEHILE 430
E PT L P + + + +
Sbjct: 533 EET-----KGAFPTWLAPKQVQIIPVNVDLHYD 560
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 80.1 bits (197), Expect = 9e-16
Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 22/263 (8%)
Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTTDGR-------- 226
+ Q + + E G+ PL + + + F+ ++ T
Sbjct: 48 ENIQQVLDRMFK-ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106
Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKC-- 284
+ PTSE + ++S I + LP R E TR LR +F
Sbjct: 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWE-----MRTRPFLRTSEFLWQEG 161
Query: 285 ELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344
TREE + A + + + A T +E +
Sbjct: 162 HTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALM-KD 220
Query: 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNAD 404
+ + G +R + +++D + + T G R + AI+ + +
Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSW---RFIGAIIMTHGDDR 277
Query: 405 GSVTIPTVLRPYMNNLAVIKKEH 427
G + +P L P + I K+
Sbjct: 278 G-LVLPPRLAPIQVVIVPIYKDE 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.4 bits (167), Expect = 3e-12
Identities = 93/513 (18%), Positives = 168/513 (32%), Gaps = 183/513 (35%)
Query: 9 QNPEHLDIALKKRHLEPQSEY---------ILSLDEKNRILIKKIEDI-----RARRNSN 54
Q + L++ L E ++ Y L ++N + K +++ AR +
Sbjct: 79 QFDQVLNLCLT----EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 55 -------------SAQIGQA--IA----EGN-------L--------SLVDALKNETSTL 80
+ G A +A +GN L LV L
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL---IKFS 191
Query: 81 KEQLPILEKEEHEVCSSLKK-------------------LISCIP-NVPLEEVPIG-TS- 118
E L L + + + L+S IP + PL IG
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-IPISCPL----IGVIQL 246
Query: 119 ANENILIRSVGKKPSAIHLSREHFE--IGEALGLM------------DFDRATKLS---- 160
A+ + + +G P + R + + G + GL+ F + + +
Sbjct: 247 AHYVVTAKLLGFTPGEL---RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 161 ---GARFSVLTGHLAHLERALGQFMIDLHTS-EHGYTEVSAPLL-VRD---EAMYGTGQI 212
G R + A+ +L + L S E+ S P+L + + E Q+
Sbjct: 304 FFIGVR-----CYEAYPNTSLPPSI--LEDSLENNEGVPS-PMLSISNLTQE------QV 349
Query: 213 PKFADDMFCTTDGRWLIPTSE---VSLTNLYSHEIIES--KSLPLRFTTLAPSFRSEAGS 267
+ + T+ +P + +SL N + ++ +SL + R
Sbjct: 350 QDYVNK----TNSH--LPAGKQVEISLVNGAKNLVVSGPPQSL-YGLNL---TLRKAKAP 399
Query: 268 AGRDT-------RGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVV 320
+G D R + ++F + + F H +L A +++ + DL V
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF-----LPVAS---PF--HSHLLVPASDLINK-DLVKNNV 448
Query: 321 SLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSR--RMNSRYRDP-N-SKSL 376
S D+ T+D G +L R +S G+ R R P +
Sbjct: 449 SFNAKDIQIPVYDTFD------GSDL-RVLS-----GSISERIVDCII--RLPVKWETTT 494
Query: 377 KF--THTLN-GSGVAVGRCLIAILENYLNADGS 406
+F TH L+ G G A G + +L + N DG+
Sbjct: 495 QFKATHILDFGPGGASG---LGVLTHR-NKDGT 523
Score = 34.9 bits (80), Expect = 0.038
Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 68/198 (34%)
Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLR--FT-TL-APSFRSEAGSAGRDTRGMLRQHQFW 282
L+PT+ + + L+ F L P+ G A D
Sbjct: 20 LLVPTA------SFFI------ASQLQEQFNKILPEPT----EGFAADDEPTT------- 56
Query: 283 KCELVS-----ITR--EEDSFTEHERMLSCA-----EEILKRLDLHYRVVSLCTGDLGFS 330
ELV ++ E + +++L+ L+ D+H L + +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTT 115
Query: 331 ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVG 390
KT + + +N + + ++ +L F G+
Sbjct: 116 LVKTKE---LI--KNYIT---ARI--------MAKRPFDKKSNSAL-FRAVGEGNAQ--- 155
Query: 391 RCLIAIL------ENYLN 402
L+AI ++Y
Sbjct: 156 --LVAIFGGQGNTDDYFE 171
Score = 29.9 bits (67), Expect = 1.2
Identities = 66/328 (20%), Positives = 105/328 (32%), Gaps = 125/328 (38%)
Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60
+LDI + NP +L I H EK + R R N SA I +
Sbjct: 1661 ILDI--VINNPVNLTI-----HFG---------GEKGK---------RIRENY-SAMIFE 1694
Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120
I +G L K E EH + + +
Sbjct: 1695 TIVDGKLKTEKIFK-------------EINEHSTSYTFR-------------------SE 1722
Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180
+ +L + +P+ + + FE ++ GL+ D A F+ GH +LG+
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-------ATFA---GH------SLGE 1766
Query: 181 F-----MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVS 235
+ + D+ + E LV E ++ G + A +P E+
Sbjct: 1767 YAALASLADVMSIES---------LV--EVVFYRGMTMQVA------------VPRDELG 1803
Query: 236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEA-----GSAGRDTRGMLRQHQFWKCELVSIT 290
+N Y I P R +A SF EA G+ T G W E+V+
Sbjct: 1804 RSN-YGMIAIN----PGR---VAASFSQEALQYVVERVGKRT-G-------WLVEIVNYN 1847
Query: 291 REEDSFTEHE--RMLSCAEEILKRLDLH 316
E + R L +L + L
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase,
editing, translation; HET: P5A; 2.3A {Enterococcus
faecalis} PDB: 2j3m_A*
Length = 572
Score = 66.1 bits (160), Expect = 1e-11
Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 10/169 (5%)
Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG----RW 227
+ L M + + E+ P L+ E +G+ + +++ D
Sbjct: 47 NRVLEKLKTIMREEFE-KIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYI 105
Query: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287
L PT E + T L EI K LPL + +R E R G+LR +F +
Sbjct: 106 LGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEK----RSRSGLLRGREFIMKDGY 161
Query: 288 SITREEDSF-TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335
S +E S + I +R L +R + G +G K +
Sbjct: 162 SFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEF 210
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA,
aminoacylation, translational regulation, protein/RNA,
ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 64.7 bits (157), Expect = 3e-11
Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 15/221 (6%)
Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198
R+H +IG+ L L + R L F+ E+ Y EV P
Sbjct: 242 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGP 296
Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFT 255
++ TG + D MF T+ + P + +++ + + LPLR
Sbjct: 297 FMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMA 356
Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315
R G++R F + + EE E + ++
Sbjct: 357 EFGSCHR---NEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGF 413
Query: 316 HYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356
VV L T E+W + +
Sbjct: 414 EKIVVKLSTRPEKRIG----SDEMWDRAEADLAVALEENNI 450
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 57.2 bits (137), Expect = 7e-09
Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 139 REHFEIGEALGLMDF-DRATKLSGARFSVLTG--------HLAHLERALGQFMIDLHTSE 189
+ H + L + D + F+ TG + AL + + H
Sbjct: 7 KTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFHA-R 65
Query: 190 HGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIE 246
GY V P++ E +G I + ++M+ + P + L+ +E+ +
Sbjct: 66 RGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAK 125
Query: 247 SKS---LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303
+S LP + R E + + Q +V R D + +
Sbjct: 126 HRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEM 185
Query: 304 SCAEEILKRLDLHY 317
E L +L +
Sbjct: 186 KLVLERLFKLGVSS 199
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine,
ATP analogue, non-natural amino acid, unnatural amino
acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina
mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A*
2q7g_A* 2q7h_A* 2zim_A*
Length = 291
Score = 47.0 bits (111), Expect = 8e-06
Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 20/177 (11%)
Query: 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDE--AMYGTGQIPKFADDMFCTTDGRW 227
+L LER + +F +D G+ E+ +P+L+ E G + + +F
Sbjct: 79 YLGKLEREITRFFVD-----RGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFC 133
Query: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287
L P +L N P++ + P +R E+ +F
Sbjct: 134 LRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFC 185
Query: 288 SITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACK-TYDLEVWLAG 343
+ S E + S + L L + +++V G + DLE+ A
Sbjct: 186 QM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAV 238
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 43.3 bits (101), Expect = 1e-04
Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 12/188 (6%)
Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GRW--LIPT 231
+ + Q + + G E+ P L + +G+ + +M D R PT
Sbjct: 71 KKIEQIVREEQN-RAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPT 129
Query: 232 SEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR 291
+E +T ++ I KSLPL + FR E M + K
Sbjct: 130 NEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRP---RFGVMRGREFLMKDAYSFDVD 186
Query: 292 EEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREIS 351
E + + +M R+ L + TG +G E + + +
Sbjct: 187 EAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSH----EFIVLAETGESGVY 242
Query: 352 SCSTCGNF 359
N
Sbjct: 243 IDRDVLNL 250
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.0 bits (77), Expect = 0.060
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 30/127 (23%)
Query: 6 WIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIED-IRA----------RRNSN 54
W+ E L + ++ E Q+E++L E+ R + + E +RA +R+
Sbjct: 1263 WVENELEALKLEAEEIPSEDQNEFLL---ERTREIHNEAESQLRAAQQQWGNDFYKRDPR 1319
Query: 55 SAQIGQAIAEGNLSLVDAL--------------KNETSTLKEQLPILEKEE-HEVCSSLK 99
A + A+A L+ +D L KNE++T+ E + L + E + V +
Sbjct: 1320 IAPLRGALATYGLT-IDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ 1378
Query: 100 KLISCIP 106
K ++ P
Sbjct: 1379 KFLTGHP 1385
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 34.2 bits (77), Expect = 0.066
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 16/177 (9%)
Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT--GQIPKFADDMFCTTD--GRW 227
+ R + + +L T + Y E+ P+ + +M+ D R
Sbjct: 16 SKKWRYIENQLDELMTF-YNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRS 74
Query: 228 --LIPTSEVSLTNLY-SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKC 284
L P ++ Y H++ + + P++ P FR E GR RQ +
Sbjct: 75 ITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR-----YRQFNQFGV 129
Query: 285 ELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWL 341
E + + E + H ++V GD+ L
Sbjct: 130 EAIGAENP---SVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHF 183
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 33.2 bits (75), Expect = 0.11
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 15/142 (10%)
Query: 190 HGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GRWLIPTSE--VSLTNLYSHEII 245
GY + P L E + I +F D G L+ + + L + +
Sbjct: 41 WGYDMIETPTLEYYETVGVVSAI--LDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLK 98
Query: 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSC 305
+ ++ PLR + +R++ G + +F + V + + + + E +
Sbjct: 99 D-RAYPLRLAYQSNVYRAQQNEGG-------KPAEFEQLG-VELIGDGTASADGEVIALM 149
Query: 306 AEEILKRLDLHYRVVSLCTGDL 327
+ + ++V G +
Sbjct: 150 IAALKRAGLSEFKVAIGHVGYV 171
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, alternative splicing, amyloid,
amyloidosis, blood coagulation, coiled coil; HET: NAG
NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.6 bits (70), Expect = 0.39
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEH 92
+DE N+ +I ++ + SL + + +
Sbjct: 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDS-----HSLTTNIMEILRGDFSSANNRDNTYN 109
Query: 93 EVCSSLKKLI 102
V L+ I
Sbjct: 110 RVSEDLRSRI 119
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.4 bits (70), Expect = 0.40
Identities = 7/69 (10%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEH 92
+DE ++ +I +R + + ++V+ ++ + + ++
Sbjct: 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTL-TKNIVELMRGDFAKANNNDNTFKQINE 116
Query: 93 EVCSSLKKL 101
++ S ++ L
Sbjct: 117 DLRSRIEIL 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.65
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 175 ER-ALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT 209
E+ AL + L S Y + SAP L A+ T
Sbjct: 18 EKQALKK----LQASLKLYADDSAPAL----AIKAT 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 29.8 bits (67), Expect = 1.2
Identities = 12/92 (13%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 15 DIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSL---V 70
+ +K+ ++ + +E +LDE + +D + + + + L +
Sbjct: 24 LVVQQKQKVQLELTEAKKALDE----IESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKI 79
Query: 71 DALKNETSTLKEQLPILEKEEHEVCSSLKKLI 102
+ L+ + L+ Q L ++ E+ + ++ +
Sbjct: 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 30.0 bits (67), Expect = 1.2
Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 10/144 (6%)
Query: 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLI 229
H L++ L + + E+S L + E + + +
Sbjct: 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTL 202
Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289
+ S L +++ K LP + ++ FR E D ++ H I
Sbjct: 203 RSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKE---DKSHLMTYHS---ASCA-I 255
Query: 290 TREEDSFTEHERMLSCAEEILKRL 313
E + + AE +L +
Sbjct: 256 AGEGVDIND---GKAIAEGLLSQF 276
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, structural genomics consortium,
lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3
PDB: 2guu_A*
Length = 353
Score = 29.1 bits (64), Expect = 2.1
Identities = 5/78 (6%), Positives = 17/78 (21%)
Query: 33 LDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEH 92
L + + + + +++ K K
Sbjct: 85 LFAPQMGGQMLLAETPPKEAQEKDEFFYFFNHFCFYIINETKEYALAYKMNFAFYLPYGS 144
Query: 93 EVCSSLKKLISCIPNVPL 110
LK + + ++ +
Sbjct: 145 LGVDVLKNVFDYLHHLNV 162
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
biosynthesis, metal binding protein; 1.95A {Escherichia
coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
2nrp_A 2nqv_A 2nrs_A 2nqn_A
Length = 411
Score = 28.9 bits (64), Expect = 2.2
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 12 EHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNS----NSAQIGQAI 62
L+ L + E + + RIL D+ + + NSA G A+
Sbjct: 12 TALNEMLSRVTPLTAQETLPLVQCFGRIL---ASDVVSPLDVPGFDNSAMDGYAV 63
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, signal,
transferase, phosphorylation, transmembrane, tyrosine-
protein kinase; HET: NAG; 2.50A {Homo sapiens}
Length = 536
Score = 28.5 bits (63), Expect = 2.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 219 MFCTTDGRWLIPTSE 233
M C DG WL+P +
Sbjct: 250 MHCAVDGEWLVPIGQ 264
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase;
bifunctional(isomerase and synthase); 2.00A
{Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P*
Length = 452
Score = 27.9 bits (62), Expect = 4.9
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 37 NRILIKKIEDIRARRNSNS-AQIGQAIAEGNLSLVDALKN 75
+I+ K + AR+ A + DAL+
Sbjct: 6 AKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQG 45
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 27.8 bits (61), Expect = 5.2
Identities = 10/71 (14%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 32 SLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEE 91
+D+ ++ ++I++IR + + + + + ++ LK ++ L++
Sbjct: 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRV-IVETINILKPGLEGAQQ----LDENY 109
Query: 92 HEVCSSLKKLI 102
V + L++ I
Sbjct: 110 GHVSTELRRRI 120
>3e99_A Benzoate 1,2-dioxygenase beta subunit; YP_105014.1, the beta
subunit of benzoate 1,2-dioxygenase, structural
genomics; 1.90A {Burkholderia mallei atcc 23344} SCOP:
d.17.4.4
Length = 164
Score = 27.5 bits (60), Expect = 6.2
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 3/92 (3%)
Query: 154 DRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIP 213
DR ++ R S + +T +
Sbjct: 71 DRVFRIKTERSSATVPDTRT--SHNIANVERESADGDVHTVRFNWHTLSYRYK-TVSSYF 127
Query: 214 KFADDMFCTTDGRWLIPTSEVSLTNLYSHEII 245
+ + I + V L N Y +++I
Sbjct: 128 GMSRYAIDFSGDAPKIVSKYVVLKNDYINQLI 159
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 27.3 bits (59), Expect = 6.8
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRS------VGKK 131
T KE ++EKEE ++ L++++S + NE I+I + VGK
Sbjct: 6 YTKKEWGVVMEKEELKILEELRRILS--------------NKNEAIVILNNYFKGGVGKS 51
Query: 132 PSAIHLSREHFEIGEALGLMDFD 154
+ + ++ + ++D D
Sbjct: 52 KLSTMFAYLTDKLNLKVLMIDKD 74
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P,
endocytosis/exocytosis complex; 2.85A {Saccharomyces
cerevisiae} SCOP: a.118.17.2
Length = 235
Score = 27.1 bits (60), Expect = 7.7
Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 18/82 (21%)
Query: 3 DIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAI 62
++++ + E +DI L + E +++ + IE + + I
Sbjct: 14 RLKFLDEGVEEIDIELARLRFES------AVE-----TLLDIESQ-------LEDLSERI 55
Query: 63 AEGNLSLVDALKNETSTLKEQL 84
++ L L++ + + +E +
Sbjct: 56 SDEELMLLNLISLKIEQRREAI 77
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 27.0 bits (59), Expect = 8.0
Identities = 15/91 (16%), Positives = 34/91 (37%)
Query: 12 EHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVD 71
+ LD+ +K+ ++P + + +KK+E R + G+ E ++
Sbjct: 129 DSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALE 188
Query: 72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLI 102
+ + L + + E S L L+
Sbjct: 189 KFDESKEIAESSMFNLLEMDIEQVSQLSALV 219
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 27.0 bits (59), Expect = 8.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 31 LSLDEKNRILIKKIEDIRARRNS----NSAQIGQAIAEGNLSLVDALK 74
L +++ I+ + + +R+ N + +A L+ L
Sbjct: 48 LEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLS 95
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,684,080
Number of extensions: 170187
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 54
Length of query: 430
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 335
Effective length of database: 3,390,050
Effective search space: 1135666750
Effective search space used: 1135666750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)