Query gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 16:34:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780682.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 14.3 41 0.0017 13.5 0.7 17 39-55 185-201 (365)
2 3fpu_B C-C motif chemokine 3; 12.3 33 0.0014 14.1 -0.3 29 48-81 1-29 (70)
3 1zxt_A ORF K6, VMIP-I, functio 11.5 36 0.0015 13.8 -0.3 24 58-81 6-29 (76)
4 3fo8_D Tail sheath protein GP1 10.8 72 0.003 12.1 1.9 28 62-89 53-80 (283)
5 1imo_A DNA ligase III; paralle 10.3 41 0.0017 13.5 -0.3 10 153-162 78-87 (88)
6 1cm9_A VMIP-II, protein (viral 9.5 47 0.002 13.2 -0.3 24 58-81 9-32 (74)
7 2wsc_E PSAE, PSI-E A, photosys 8.7 59 0.0025 12.6 -0.0 5 27-31 93-97 (143)
8 2v7f_A RPS19, RPS19E SSU ribos 8.2 81 0.0034 11.8 0.5 9 26-34 47-55 (150)
9 1hum_A Human macrophage inflam 7.6 82 0.0034 11.8 0.3 22 59-80 7-28 (69)
10 1ha6_A Macrophage inflammatory 7.3 81 0.0034 11.8 0.2 22 59-80 2-23 (70)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=14.28 E-value=41 Score=13.50 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHCCCEE
Q ss_conf 88999999974246729
Q gi|254780682|r 39 LSHQIHKALMSISSGII 55 (199)
Q Consensus 39 lshqihkalmsissgii 55 (199)
...||+||-|+|.+.++
T Consensus 185 ~~~QIlKAAmAIN~~vL 201 (365)
T 2ntx_A 185 SVTQVQKAAMAINAQVL 201 (365)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999878777
No 2
>3fpu_B C-C motif chemokine 3; protein:protein complex, glycoprotein, secreted, chemotaxis, cytokine, inflammatory response, polymorphism, immune system; 1.76A {Homo sapiens} PDB: 3h44_C 1b50_A 1b53_A
Probab=12.30 E-value=33 Score=14.06 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=21.2
Q ss_pred HHHCCCEEEEECCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 7424672999803445566310452111333189
Q gi|254780682|r 48 MSISSGIILILSPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 48 msissgiililsptdctantanilipsrkiidyh 81 (199)
||++++ .|.+|--++..--||.+.|.+|.
T Consensus 1 ~s~~~~-----~p~~CC~~~~~~~Ip~~~i~~y~ 29 (70)
T 3fpu_B 1 MSLAAD-----TPTTCCFSYTSRQIPQNFIADYF 29 (70)
T ss_dssp -CCGGG-----SBCEECSSCCSSCCCGGGEEEEE
T ss_pred CCCCCC-----CCCCCCCCCCCCCCCHHHEEEEE
T ss_conf 965689-----99673417768818903723999
No 3
>1zxt_A ORF K6, VMIP-I, functional macrophage inflammatory protein 1- alpha homolog; chemokine fold, greek KEY motif, signaling protein; 1.70A {Human herpesvirus 8}
Probab=11.46 E-value=36 Score=13.84 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=19.8
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 803445566310452111333189
Q gi|254780682|r 58 LSPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 58 lsptdctantanilipsrkiidyh 81 (199)
-+|++|--++..--||.+.|.+|.
T Consensus 6 ~~P~~CC~~~~~~~Ip~~~I~~y~ 29 (76)
T 1zxt_A 6 YTPNSCCYGFQQHPPPVQILKEWY 29 (76)
T ss_dssp TCCEEECSSCCCSCCCGGGEEEEE
T ss_pred CCCCCCCCCCCCCCCCHHHEEEEE
T ss_conf 895551238668849903856999
No 4
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=10.79 E-value=72 Score=12.11 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=20.6
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCC
Q ss_conf 4556631045211133318998655214
Q gi|254780682|r 62 DCTANTANILIPSRKIIDYHRLLEQKKN 89 (199)
Q Consensus 62 dctantanilipsrkiidyhrlleqkkn 89 (199)
|....-..+.|||.|||+|-|-+-|--.
T Consensus 53 d~~gki~~vfiPsakIIa~Ak~ig~YP~ 80 (283)
T 3fo8_D 53 DADGKIKKINIPTAKIIAKAKEVGEYPT 80 (283)
T ss_dssp CTTCCEEEEECCCHHHHHHHHHHTCTTT
T ss_pred ECCCCEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 1699689998773999998875177887
No 5
>1imo_A DNA ligase III; parallel beta sheet; HET: DNA; NMR {Homo sapiens} SCOP: c.15.1.2 PDB: 1in1_A*
Probab=10.27 E-value=41 Score=13.52 Aligned_cols=10 Identities=30% Similarity=1.295 Sum_probs=8.1
Q ss_pred EEECCCCCCC
Q ss_conf 1201125786
Q gi|254780682|r 153 CVKEKKLIPP 162 (199)
Q Consensus 153 cvkekklipp 162 (199)
|+++++|+||
T Consensus 78 ci~~~kLLPp 87 (88)
T 1imo_A 78 CIRKRRLVAP 87 (88)
T ss_dssp HHHHTSCCCC
T ss_pred HHHCCCCCCC
T ss_conf 9873786899
No 6
>1cm9_A VMIP-II, protein (viral macrophage inflammatory protein- II); chemokine, karposi'S sarcoma; 2.10A {Human herpesvirus 8} SCOP: d.9.1.1 PDB: 1hhv_A* 1hfg_A 1hfn_A 1vmp_A 2fht_A 2fj2_A
Probab=9.46 E-value=47 Score=13.17 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.7
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 803445566310452111333189
Q gi|254780682|r 58 LSPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 58 lsptdctantanilipsrkiidyh 81 (199)
.+|++|-.+...--||.+.|..|.
T Consensus 9 ~~P~~CC~~~~~~~ip~~~i~~y~ 32 (74)
T 1cm9_A 9 HRPDKCCLGYQKRPLPQVLLSSWY 32 (74)
T ss_dssp CCCEEECSSCCCSCCCGGGEEEEE
T ss_pred CCCCCCCCCCCCCCCCCHHEEEEE
T ss_conf 994712246668838903835999
No 7
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E*
Probab=8.66 E-value=59 Score=12.61 Aligned_cols=5 Identities=60% Similarity=2.009 Sum_probs=0.0
Q ss_pred CHHHH
Q ss_conf 12565
Q gi|254780682|r 27 ESFWY 31 (199)
Q Consensus 27 esfwy 31 (199)
|||||
T Consensus 93 ESYWy 97 (143)
T 2wsc_E 93 ESYWF 97 (143)
T ss_dssp SSTTT
T ss_pred CCEEE
T ss_conf 44410
No 8
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=8.19 E-value=81 Score=11.78 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=0.0
Q ss_pred CCHHHHHHH
Q ss_conf 512565898
Q gi|254780682|r 26 NESFWYIRT 34 (199)
Q Consensus 26 nesfwyirt 34 (199)
++.+||+|.
T Consensus 47 ~~DW~Y~R~ 55 (150)
T 2v7f_A 47 QEDWWYYRV 55 (150)
T ss_dssp HHTHHHHHH
T ss_pred CCCHHHHHH
T ss_conf 974489999
No 9
>1hum_A Human macrophage inflammatory protein 1 beta; cytokine(chemotactic); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1hun_A 1je4_A 2ffk_B 2fin_B
Probab=7.60 E-value=82 Score=11.77 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCHHHHHH
Q ss_conf 0344556631045211133318
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDY 80 (199)
Q Consensus 59 sptdctantanilipsrkiidy 80 (199)
.|++|--+...--||.+.|..|
T Consensus 7 ~p~~CC~~~~~~~ip~~~i~~Y 28 (69)
T 1hum_A 7 PPTACCFSYTARKLPRNFVVDY 28 (69)
T ss_dssp CCCBCCSSCCSSCCCGGGCSEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEE
T ss_conf 9850002477884894480288
No 10
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=7.33 E-value=81 Score=11.80 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCHHHHHH
Q ss_conf 0344556631045211133318
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDY 80 (199)
Q Consensus 59 sptdctantanilipsrkiidy 80 (199)
|+.||-..+..--||.+.|..|
T Consensus 2 s~~~CC~~~~~~~Ip~~~I~~y 23 (70)
T 1ha6_A 2 SNYDCCLSYIQTPLPSRAIVGF 23 (70)
T ss_dssp CCCCCSSSBCSSCCCGGGEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEE
T ss_conf 8775445646881682270399
Done!