BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
(199 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040359|gb|ACT57155.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 199
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP
Sbjct: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
Query: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA
Sbjct: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
Query: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN
Sbjct: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
Query: 181 NQEIKNIHHKKNKPRLHCQ 199
NQEIKNIHHKKNKPRLHCQ
Sbjct: 181 NQEIKNIHHKKNKPRLHCQ 199
>gi|315122207|ref|YP_004062696.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495609|gb|ADR52208.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 344
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 30/182 (16%)
Query: 44 HKALMSISSGIILILSPTDCTANTANILIPSRKIIDYH-RLLEQKKNHNLQYSLINIPSQ 102
+K L +LIL T N NIL+ KI +YH RL+EQK N Q +I IP
Sbjct: 12 YKILAKTIFCFLLILVSTSDKTNAENILVLPSKITNYHNRLVEQKNNPEKQ--VIPIPLP 69
Query: 103 NKQESPKNANNNILDHIALLKERLRTDINT-FDNTNLETKIPLP----------NNLKPN 151
KQE P N NN +D LL ++ D N + + L KIPLP N+L N
Sbjct: 70 TKQEYPSNTNNKTIDQNTLLAKKGFVDKNNLYSSMYLSKKIPLPNKCLLFPPDNNSLHLN 129
Query: 152 VCVKEKKLIPPRKNINNLK--------------DTNHRLKIKNNQEIKNIHHKKN--KPR 195
C++ K +KNI++ + + K+KNNQ+IK+I +KKN P+
Sbjct: 130 NCIENKSPNSSKKNISHTRKIPKYKKNNPKKSGNIAPAFKVKNNQKIKHIQYKKNNYSPQ 189
Query: 196 LH 197
+H
Sbjct: 190 IH 191
>gi|57096618|ref|XP_532571.1| PREDICTED: similar to SHC SH2-domain binding protein 1 [Canis
familiaris]
Length = 666
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ + I LK++
Sbjct: 233 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEIEQLKQK 292
Query: 126 LRTDINTF--------DNTNLETKIPLPNNLK 149
L+ N N+N++ K PN K
Sbjct: 293 LKLIENPLLRYVFGYQKNSNIQAKGIRPNGQK 324
>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]
Length = 692
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 65 ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
AN L+P KI D+H ++ +N N+ L+N+ SQNK K+ ++
Sbjct: 451 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDDLESVEAS 510
Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
+ + L+E+LR+ + DN + T + N+ K + ++E +PP+K
Sbjct: 511 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSTKFKGISLEEN--MPPKK 556
>gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]
Length = 628
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 65 ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
AN L+P KI D+H ++ +N N+ L+N+ SQNK K+ ++
Sbjct: 387 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDGLESVEAS 446
Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
+ + L+E+LR+ + DN + T + N+ K + ++E +PP+K
Sbjct: 447 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSRKFKGISLEEN--MPPKK 492
>gi|51490739|emb|CAH18713.1| extracellular ribonuclease [Bacillus megaterium]
Length = 382
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 34 TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKN---- 89
TL PY SH K++ SIS+ T T + P+ + DY+R + +K
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172
Query: 90 ---HN-------LQYSLINIPSQNKQESPKNANNNIL 116
HN L YS + + E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKETDEDPANANNVIL 209
>gi|295702542|ref|YP_003595617.1| extracellular ribonuclease [Bacillus megaterium DSM 319]
gi|294800201|gb|ADF37267.1| Extracellular ribonuclease [Bacillus megaterium DSM 319]
Length = 384
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 34 TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKN---- 89
TL PY SH K++ SIS+ T T + P+ + DY+R + +K
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172
Query: 90 ---HN-------LQYSLINIPSQNKQESPKNANNNIL 116
HN L YS + + E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKKTDEDPANANNVIL 209
>gi|6755508|ref|NP_035499.1| SHC SH2 domain-binding protein 1 [Mus musculus]
gi|81882097|sp|Q9Z179|SHCBP_MOUSE RecName: Full=SHC SH2 domain-binding protein 1; AltName:
Full=Protein expressed in activated lymphocytes;
Short=mPAL; AltName: Full=SHC-binding protein
gi|4102877|gb|AAD01613.1| Shc binding protein [Mus musculus]
gi|47683039|gb|AAH70455.1| Shc SH2-domain binding protein 1 [Mus musculus]
gi|148690064|gb|EDL22011.1| Shc SH2-domain binding protein 1, isoform CRA_b [Mus musculus]
Length = 668
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ N+ I LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298
Query: 126 LR 127
L+
Sbjct: 299 LK 300
>gi|74201453|dbj|BAE26159.1| unnamed protein product [Mus musculus]
Length = 668
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ N+ I LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298
Query: 126 LR 127
L+
Sbjct: 299 LK 300
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040359|gb|ACT57155.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 199
Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP
Sbjct: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
Query: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA
Sbjct: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
Query: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN
Sbjct: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
Query: 181 NQEIKNIHHKKNKPRLHCQ 199
NQEIKNIHHKKNKPRLHCQ
Sbjct: 181 NQEIKNIHHKKNKPRLHCQ 199
>gi|315122207|ref|YP_004062696.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495609|gb|ADR52208.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 344
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 90/185 (48%), Gaps = 30/185 (16%)
Query: 41 HQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYH-RLLEQKKNHNLQYSLINI 99
++ +K L +LIL T N NIL+ KI +YH RL+EQK N Q +I I
Sbjct: 9 NKYYKILAKTIFCFLLILVSTSDKTNAENILVLPSKITNYHNRLVEQKNNPEKQ--VIPI 66
Query: 100 PSQNKQESPKNANNNILDHIALLKERLRTDINT-FDNTNLETKIPLP----------NNL 148
P KQE P N NN +D LL ++ D N + + L KIPLP N+L
Sbjct: 67 PLPTKQEYPSNTNNKTIDQNTLLAKKGFVDKNNLYSSMYLSKKIPLPNKCLLFPPDNNSL 126
Query: 149 KPNVCVKEKKLIPPRKNINNLK--------------DTNHRLKIKNNQEIKNIHHKKN-- 192
N C++ K +KNI++ + + K+KNNQ+IK+I +KKN
Sbjct: 127 HLNNCIENKSPNSSKKNISHTRKIPKYKKNNPKKSGNIAPAFKVKNNQKIKHIQYKKNNY 186
Query: 193 KPRLH 197
P++H
Sbjct: 187 SPQIH 191
>gi|113476744|ref|YP_722805.1| WD-40 repeat-containing protein [Trichodesmium erythraeum IMS101]
gi|110167792|gb|ABG52332.1| WD-40 repeat [Trichodesmium erythraeum IMS101]
Length = 1304
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 68 ANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLR 127
+L+ K+ +++ Q N L + + SQ+ Q KN +NNI+D E L
Sbjct: 432 QKLLVNPFKLKNFN---NQVTNFQLGENFSGLESQDNQ---KNQSNNIIDPEQKQLENL- 484
Query: 128 TDINTFD----NTNLETKIP-----LPNNLKPNVCV--KEKKLIPPRKNINNLKDTNHRL 176
D+N FD N NLE I + ++ N + ++K+L P + I + K+ +++
Sbjct: 485 LDLNQFDSSVTNLNLEENISNLQLFENHQIQSNNLIHPQQKELETPGEKITHQKNNKNQV 544
Query: 177 KIKNNQEIKNIHHKKN 192
+ K +++ HK N
Sbjct: 545 RDKKAKKLAISQHKLN 560
>gi|114330989|ref|YP_747211.1| RND family efflux transporter MFP subunit [Nitrosomonas eutropha
C91]
gi|114308003|gb|ABI59246.1| efflux transporter, RND family, MFP subunit [Nitrosomonas eutropha
C91]
Length = 363
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 134 DNTNLETKIPLPNNL----KPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHH 189
N +L +P P ++ +PN+ V+ + I+++++ + + +N+ I + +
Sbjct: 202 SNQHLRAHLPFPESIASYIRPNLEVRLSTPTSDTEIISHIRELKPAIGV-SNRAIDALVY 260
Query: 190 KKNKPRLH 197
+N+P H
Sbjct: 261 IENQPGWH 268
>gi|194751423|ref|XP_001958026.1| GF23720 [Drosophila ananassae]
gi|190625308|gb|EDV40832.1| GF23720 [Drosophila ananassae]
Length = 1134
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 87 KKNHNLQYSLINIPSQNKQESP-KNAN---NNILDHIALLKERLRTDINTFDNTNLETKI 142
K + L NIP NK+ P N N ++LD LK +T + + T +
Sbjct: 610 KHGGKADFDLNNIPMPNKEIDPLPNTNLSSTDVLDSSTPLKPSQQTTLISNLKPKSLTAL 669
Query: 143 PLPNNLKPNVCVKEKKLIPPRKNINNLKDTN 173
PLP + V E+ P +K ++ K+ N
Sbjct: 670 PLPPGMNALDLVNERSPSPAQKKESDEKNIN 700
>gi|123407421|ref|XP_001303005.1| mRNA capping enzyme, large subunit family protein [Trichomonas
vaginalis G3]
gi|121884347|gb|EAX90075.1| mRNA capping enzyme, large subunit family protein [Trichomonas
vaginalis G3]
Length = 355
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 90 HNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIP 143
+ Q + + P +K+ PK ++D +E + D + +D TK P
Sbjct: 300 YQKQGTFVPPPKPDKKSYPKTWTMKLIDAKTGAEELVNVDHDDYDTPRGRTKKP 353
>gi|77556686|gb|ABA99482.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
Length = 1091
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 60 PTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHI 119
P+D +++ +++ R++ L +K+ + P+ K SP ++ + L
Sbjct: 506 PSDGGSSSEGLVVSPRRMPT---PLLPRKSPS------PPPAHCKSPSPPSSKHQSLASS 556
Query: 120 ALLKERLRTDINTF----DNTNLETKIPLPNNLKPNVCVKEKKLIP 161
LK+R R + + K+PLPN L P+ +KEKK +
Sbjct: 557 IPLKKRGRLCKTSQMSEPPSLKKPKKVPLPNMLVPS--LKEKKEMS 600
>gi|329927657|ref|ZP_08281804.1| hypothetical protein HMPREF9412_2972 [Paenibacillus sp. HGF5]
gi|328938355|gb|EGG34746.1| hypothetical protein HMPREF9412_2972 [Paenibacillus sp. HGF5]
Length = 386
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 20 MSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIID 79
+S G+ E++ + ++ + + +++ I+ GI+++ + N N+++
Sbjct: 115 ISGGRFTETYALLASMIDEIDYVVYE----INYGIVVV------SDNDPNVVVYPS---- 160
Query: 80 YHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLE 139
L+E+ + L++ P +N++ P NA+N + H L K L D +
Sbjct: 161 ---LVEKLGQPIPRSWLVDFPDKNRESLPSNAHNWVTSHF-LNKWALYHDRDAISYRLFM 216
Query: 140 TKIPL 144
T+ P+
Sbjct: 217 TRTPM 221
>gi|307170585|gb|EFN62779.1| Transformation/transcription domain-associated protein [Camponotus
floridanus]
Length = 3826
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 8 LIKHKLKLHKNIMSKGK---INE-SFWYIRTLFPYLSHQI--HKALMSISSGIILILSPT 61
+ H +K+ I+ +G+ I+E + +R L + H++ ++ L I+ ++S
Sbjct: 52 FLDHMMKIFLKILQEGEPHFISEYNIQQVRKLILEMIHRLPSNEYLRPYVRQILTLMSKL 111
Query: 62 DCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIAL 121
T N N+L+ R II+ H+ + N +QY L + S E PKN + I +
Sbjct: 112 LETDNEENVLVCLRIIIELHKQYKPTFNPEIQYFLQFVKS-VYSELPKNL-SKIFEPRPA 169
Query: 122 LKERLRTDIN 131
L+ + ++IN
Sbjct: 170 LRVKDLSEIN 179
>gi|193210429|ref|NP_509769.2| hypothetical protein F59F5.7 [Caenorhabditis elegans]
gi|145292013|emb|CAA90661.3| C. elegans protein F59F5.7, partially confirmed by transcript
evidence [Caenorhabditis elegans]
gi|145292089|emb|CAA93477.3| C. elegans protein F59F5.7, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 896
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 82 RLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINT-FDNTNLET 140
++ E K+N N+ + IP K+E N L ++ + + R + + + ++
Sbjct: 362 KVFENKENKNIDPLALPIPEPEKKEKVSKEVENTLKLLSTMPDEQRKMLESAIKDGEIDA 421
Query: 141 KIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHH 189
PL NL N +E K + I ++ K + KN+ +
Sbjct: 422 DSPLIKNLVKNDVTEESKKEKANRLIEWIRSNRPSTKTPESGIPKNVPY 470
>gi|221118968|ref|XP_002160131.1| PREDICTED: similar to DIRAS family, GTP-binding RAS-like 1 [Hydra
magnipapillata]
Length = 223
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 80 YHRLLE-QKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNL 138
Y RLL+ + +NH + S++ +Q+ +N N +D A +KE +T + L
Sbjct: 118 YQRLLKIRGENHEVYMSVVGTKMDKQQQYDENTKNEAVD--AFIKEIGGRAKHTITSAKL 175
Query: 139 ETKIPLPNNLKPNVCVKEKKLIPPR-KNINNLKDTNHRLKI 178
+ + V K ++ L TN + I
Sbjct: 176 NINVVEAFEAALSNVVANMTPNEDAIKRLDKLMKTNEKKSI 216
>gi|241762403|ref|ZP_04760482.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241373090|gb|EER62739.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 628
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 18/167 (10%)
Query: 36 FPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQ-KKNHNLQY 94
FP L H++ + L+ S + + P + +I + ++ D ++ Q KK ++
Sbjct: 336 FPVL-HRLWQLLLKGHSEVQNAVLPLEAAEMALLRVIHASQLPDPATIIAQLKKQGSVSP 394
Query: 95 SLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLE---TKIPLP---NNL 148
+L P N+ P ++ +I + NTF N K LP N+
Sbjct: 395 NLSPSPEDNRLALPTSSFQDI--------KAGDVKKNTFKPVNSSGSQEKEALPKNRNDF 446
Query: 149 KPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHHKKNKPR 195
++ EKK P + NN + ++ NQ+ + +N+PR
Sbjct: 447 SKSLQSTEKKDFSPFDDDNNSRVAASGYPVEGNQKFSEL--PENQPR 491
>gi|297729277|ref|NP_001177002.1| Os12g0551900 [Oryza sativa Japonica Group]
gi|255670383|dbj|BAH95730.1| Os12g0551900 [Oryza sativa Japonica Group]
Length = 853
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 60 PTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHI 119
P+D +++ +++ R++ L +K+ + P+ K SP ++ + L
Sbjct: 325 PSDGGSSSEGLVVSPRRMPT---PLLPRKSPS------PPPAHCKSPSPPSSKHQSLASS 375
Query: 120 ALLKERLRTDINTF----DNTNLETKIPLPNNLKPNVCVKEKKLIP 161
LK+R R + + K+PLPN L P+ +KEKK +
Sbjct: 376 IPLKKRGRLCKTSQMSEPPSLKKPKKVPLPNMLVPS--LKEKKEMS 419
>gi|134107189|ref|XP_777725.1| hypothetical protein CNBA6030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260421|gb|EAL23078.1| hypothetical protein CNBA6030 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 3400
Score = 34.3 bits (77), Expect = 9.8, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 38 YLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLI 97
Y SH ++ +I++ L+ SPT N+ + +K D R+ E K L
Sbjct: 278 YRSHTHPQSASAIANKYPLMSSPTKGATNSETLPATPKKASDLIRMFESKSTPTK-GELP 336
Query: 98 NIPSQN 103
+P Q+
Sbjct: 337 PVPQQS 342
>gi|145523511|ref|XP_001447594.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415105|emb|CAK80197.1| unnamed protein product [Paramecium tetraurelia]
Length = 983
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 86 QKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETK 141
+ KNH L+ L+N+ K E P NA ++ I LLK+ +D N ++++L +
Sbjct: 815 RNKNHILEAELMNLKEAKKIEDPNNATKRLISEIQLLKQSQVSDNNNINDSSLRRE 870
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.133 0.367
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,588,469,637
Number of Sequences: 14124377
Number of extensions: 145337369
Number of successful extensions: 497266
Number of sequences better than 10.0: 829
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 1356
Number of HSP's that attempted gapping in prelim test: 492257
Number of HSP's gapped (non-prelim): 5857
length of query: 199
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 67
effective length of database: 2,978,375,866
effective search space: 199551183022
effective search space used: 199551183022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 77 (34.3 bits)