BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
(199 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040359|gb|ACT57155.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 199
Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP
Sbjct: 1 MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
Query: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA
Sbjct: 61 TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
Query: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN
Sbjct: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
Query: 181 NQEIKNIHHKKNKPRLHCQ 199
NQEIKNIHHKKNKPRLHCQ
Sbjct: 181 NQEIKNIHHKKNKPRLHCQ 199
>gi|315122207|ref|YP_004062696.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495609|gb|ADR52208.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 344
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 30/171 (17%)
Query: 55 ILILSPTDCTANTANILIPSRKIIDYH-RLLEQKKNHNLQYSLINIPSQNKQESPKNANN 113
+LIL T N NIL+ KI +YH RL+EQK N Q +I IP KQE P N NN
Sbjct: 23 LLILVSTSDKTNAENILVLPSKITNYHNRLVEQKNNPEKQ--VIPIPLPTKQEYPSNTNN 80
Query: 114 NILDHIALLKERLRTDINT-FDNTNLETKIPLP----------NNLKPNVCVKEKKLIPP 162
+D LL ++ D N + + L KIPLP N+L N C++ K
Sbjct: 81 KTIDQNTLLAKKGFVDKNNLYSSMYLSKKIPLPNKCLLFPPDNNSLHLNNCIENKSPNSS 140
Query: 163 RKNINNLKDTNHR--------------LKIKNNQEIKNIHHKKNK--PRLH 197
+KNI++ + K+KNNQ+IK+I +KKN P++H
Sbjct: 141 KKNISHTRKIPKYKKNNPKKSGNIAPAFKVKNNQKIKHIQYKKNNYSPQIH 191
>gi|145523511|ref|XP_001447594.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415105|emb|CAK80197.1| unnamed protein product [Paramecium tetraurelia]
Length = 983
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 86 QKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLP 145
+ KNH L+ L+N+ K E P NA ++ I LLK+ +D N ++++L +
Sbjct: 815 RNKNHILEAELMNLKEAKKIEDPNNATKRLISEIQLLKQSQVSDNNNINDSSLRRE---R 871
Query: 146 NNLKPNVCVKEKKLIPPRKNINNLKDTN----HRLKIKNNQEIK 185
N+L+ R+ + LKD+N H+++ N + +K
Sbjct: 872 NDLQEE----------NRRLVQLLKDSNKWDLHKMQQDNERLLK 905
>gi|325690047|gb|EGD32051.1| hypothetical protein HMPREF9382_1005 [Streptococcus sanguinis
SK115]
Length = 547
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 115 ILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTN 173
I+D++ ++E+LR DI +DN T + NL V K+KK I PR ++N + N
Sbjct: 275 IIDNVNCIREKLRFDIEDYDNFIHYTSLKTLKNL---VYTKDKKNIYPRLRLSNARQMN 330
>gi|295702542|ref|YP_003595617.1| extracellular ribonuclease [Bacillus megaterium DSM 319]
gi|294800201|gb|ADF37267.1| Extracellular ribonuclease [Bacillus megaterium DSM 319]
Length = 384
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 34 TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQ 93
TL PY SH K++ SIS+ T T + P+ + DY+R + +K ++L+
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172
Query: 94 YSLINIPSQNKQ--------------ESPKNANNNIL 116
L NI + + E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKKTDEDPANANNVIL 209
>gi|51490739|emb|CAH18713.1| extracellular ribonuclease [Bacillus megaterium]
Length = 382
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 34 TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQ 93
TL PY SH K++ SIS+ T T + P+ + DY+R + +K ++L+
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172
Query: 94 YSLINIPSQNKQ--------------ESPKNANNNIL 116
L NI + + E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKETDEDPANANNVIL 209
>gi|113476744|ref|YP_722805.1| WD-40 repeat-containing protein [Trichodesmium erythraeum IMS101]
gi|110167792|gb|ABG52332.1| WD-40 repeat [Trichodesmium erythraeum IMS101]
Length = 1304
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 65 ANTANILIPSRKIIDYHRLL--EQK--------KNHNLQYSLI----NIPSQNKQESPKN 110
AN +N IP + H + EQK KN N Q + N Q++ KN
Sbjct: 409 ANVSNFEIPENQKNYSHNEINSEQKLLVNPFKLKNFNNQVTNFQLGENFSGLESQDNQKN 468
Query: 111 ANNNILDHIALLKERLRTDINTFD----NTNLETKIP----------LPNNLKPNVCVKE 156
+NNI+D E L D+N FD N NLE I NNL + ++
Sbjct: 469 QSNNIIDPEQKQLENL-LDLNQFDSSVTNLNLEENISNLQLFENHQIQSNNL---IHPQQ 524
Query: 157 KKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHHKKN 192
K+L P + I + K+ ++++ K +++ HK N
Sbjct: 525 KELETPGEKITHQKNNKNQVRDKKAKKLAISQHKLN 560
>gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]
Length = 628
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 65 ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
AN L+P KI D+H ++ +N N+ L+N+ SQNK K+ ++
Sbjct: 387 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDGLESVEAS 446
Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
+ + L+E+LR+ + DN + T + N+ K + ++E +PP+K
Sbjct: 447 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSRKFKGISLEEN--MPPKK 492
>gi|57096618|ref|XP_532571.1| PREDICTED: similar to SHC SH2-domain binding protein 1 [Canis
familiaris]
Length = 666
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ + I LK++
Sbjct: 233 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEIEQLKQK 292
Query: 126 LRTDINTF--------DNTNLETKIPLPNNLK 149
L+ N N+N++ K PN K
Sbjct: 293 LKLIENPLLRYVFGYQKNSNIQAKGIRPNGQK 324
>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]
Length = 692
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 65 ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
AN L+P KI D+H ++ +N N+ L+N+ SQNK K+ ++
Sbjct: 451 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDDLESVEAS 510
Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
+ + L+E+LR+ + DN + T + N+ K + ++E +PP+K
Sbjct: 511 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSTKFKGISLEEN--MPPKK 556
>gi|74201453|dbj|BAE26159.1| unnamed protein product [Mus musculus]
Length = 668
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ N+ I LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298
Query: 126 LR 127
L+
Sbjct: 299 LK 300
>gi|74146441|dbj|BAE28972.1| unnamed protein product [Mus musculus]
Length = 357
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ N+ I LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298
Query: 126 LR 127
L+
Sbjct: 299 LK 300
>gi|6755508|ref|NP_035499.1| SHC SH2 domain-binding protein 1 [Mus musculus]
gi|81882097|sp|Q9Z179|SHCBP_MOUSE RecName: Full=SHC SH2 domain-binding protein 1; AltName:
Full=Protein expressed in activated lymphocytes;
Short=mPAL; AltName: Full=SHC-binding protein
gi|4102877|gb|AAD01613.1| Shc binding protein [Mus musculus]
gi|47683039|gb|AAH70455.1| Shc SH2-domain binding protein 1 [Mus musculus]
gi|148690064|gb|EDL22011.1| Shc SH2-domain binding protein 1, isoform CRA_b [Mus musculus]
Length = 668
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 72 IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
+PS I+DYH LL Q +K NL+ SL N S ++QE+ N+ I LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298
Query: 126 LR 127
L+
Sbjct: 299 LK 300
>gi|66805773|ref|XP_636608.1| WD40 repeat-containing protein [Dictyostelium discoideum AX4]
gi|60464996|gb|EAL63106.1| WD40 repeat-containing protein [Dictyostelium discoideum AX4]
Length = 560
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 21/180 (11%)
Query: 13 LKLHKNIMSKGKI--NESFW--YIRTLFPYLSHQIHKALMSISSGIILILSPTDC-TANT 67
L + +++ G I N + W + R + +++ I ++ S+S ++++P D N
Sbjct: 338 LSMDGSLLISGSIDGNCNIWDTFSRQIVRSIANTIKGSISSLS----VLMNPIDSLNFNV 393
Query: 68 ANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLR 127
++K D E+ ++N++ + ++P + KQ + N NI ++ L+ R+
Sbjct: 394 NGTAENNKKASDPIAPFEKYSSNNIERT--SVPIKLKQ---IDDNGNIKITVSNLQSRIE 448
Query: 128 TDINTFDNTNLETKIPLPNN-----LKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQ 182
I N + L NN L + EK+++ +K I NL+D N+ LK+ N+Q
Sbjct: 449 NTI--VSNEQITNHTNLENNNKIIELNKTIQEYEKEILQFKKQIQNLQDNNNTLKLTNDQ 506
>gi|198425856|ref|XP_002124004.1| PREDICTED: similar to Serine/threonine-protein kinase atr (Ataxia
telangiectasia and Rad3-related protein) (Xatr) [Ciona
intestinalis]
Length = 2497
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 36/155 (23%)
Query: 10 KHKLKLHKNIMSKGKINESF----------WYIRTLFPYLSHQI-------HKALMSISS 52
K+ L L K + G ++ +F W ++TL YL QI + L SIS+
Sbjct: 738 KNNLALSKYLELVGAMSRTFVDVSTLSVLEWTLKTLVQYLVRQIPHCYSTSYLQLESISA 797
Query: 53 GII-----------LILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLIN--- 98
I LI+ C AN + PSRK +D L + N +L+Y + N
Sbjct: 798 DISRRQEVFRHHCRLIIET--CVANLLDENNPSRKPLDVMEDLSKLFNSSLEYFITNNLM 855
Query: 99 ---IPSQNKQESPKNANNNILDHIALLKERLRTDI 130
P Q+S N +N+L ++ E+ R D+
Sbjct: 856 YLLPPIIVMQQSHNNKKDNLLTLLSENSEKSRIDM 890
>gi|30684987|ref|NP_564005.2| unknown protein [Arabidopsis thaliana]
gi|22022516|gb|AAM83216.1| At1g16750/F19K19_26 [Arabidopsis thaliana]
gi|24111407|gb|AAN46838.1| At1g16750/F19K19_26 [Arabidopsis thaliana]
gi|332191371|gb|AEE29492.1| uncharacterized protein [Arabidopsis thaliana]
Length = 529
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 7 FLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP--TDCT 64
F ++H +K KN + K +R L S Q HK +S +S + + T+
Sbjct: 45 FELEHDVKRLKNQLQKETA------MRALLLKASDQSHKIELSHASSLPRSVQELLTNIA 98
Query: 65 ANTANILIPSRKIIDYHRLLEQKKN------HNLQYSL--------INIPSQNKQESPKN 110
A A + ++I+ H LL Q++N +NL +SL + + +N+ PK
Sbjct: 99 AMEATVSKLEQEIMSLHFLLIQERNERKLAEYNLTHSLSPPNALDLVRLSEKNESLRPK- 157
Query: 111 ANNNILDHIALLKERLRTDINTFDNTNLETK 141
DH A + ++ + +FDN N +K
Sbjct: 158 ------DHKAQPRSKVAKSLQSFDNANELSK 182
>gi|328786694|ref|XP_397483.4| PREDICTED: hypothetical protein LOC414048 [Apis mellifera]
Length = 1219
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 101 SQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLI 160
SQN + KN++NNI + ++++KE DIN + + + E+ I + N +K + I
Sbjct: 483 SQNVKRK-KNSSNNIENDVSIIKEN-SDDINIYHSLSKESDILINNKIKETLDQLNSDSI 540
Query: 161 PPRKNIN---------NLKDTNHRLKIKNNQE 183
+K IN + +D+ RL+I N++E
Sbjct: 541 KIKKEINKEDESFDELSDEDSRDRLEIDNSEE 572
>gi|332519820|ref|ZP_08396284.1| efflux transporter, RND family, MFP subunit [Lacinutrix algicola
5H-3-7-4]
gi|332044379|gb|EGI80573.1| efflux transporter, RND family, MFP subunit [Lacinutrix algicola
5H-3-7-4]
Length = 378
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 82 RLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTD-----------I 130
+L + + +N +LI++ + S ++A +N+ + IA + LR D +
Sbjct: 83 KLFKPGQEYNRGETLISLDAAEYYASVQSAKSNLYNSIAAIMPDLRLDFKDVYQKWQTYL 142
Query: 131 NTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKI 178
N FD K+P +N K N + + +I N+ NL+ + +I
Sbjct: 143 NNFDLNKTTPKLPEVSNEKENYFITGRGIISAYYNVKNLEQRLAKYRI 190
>gi|328714558|ref|XP_001944844.2| PREDICTED: hypothetical protein LOC100168206 [Acyrthosiphon pisum]
Length = 3806
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 135 NTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLK 177
+T+ E ++P P+ LK + +K KK+ P N LK+ N K
Sbjct: 2858 DTDYEPQLPSPSQLKYKILIKNKKIAPLESEANRLKNNNSSTK 2900
>gi|326405796|gb|ADZ62867.1| Putative glycerophosphoryl diester phosphodiesterase [Lactococcus
lactis subsp. lactis CV56]
Length = 703
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 85 EQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLET---- 140
+Q+ + N+ SL+ N + N+ D I+ E++ D N+FD+ N ET
Sbjct: 49 DQEDSSNISLSLVQESKLNDEADSTLKTNSSTDQISN-DEKINQD-NSFDHGNSETGQDV 106
Query: 141 KIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHHKKNKPRL 196
K+P N++ KE+ +NL + L+ + QE NI + KP +
Sbjct: 107 KVPESNSMDN----KEQNSTSYTTYDSNLTQDSKILESQTKQETNNISETEKKPEV 158
>gi|12045116|ref|NP_072927.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
gi|255660357|ref|ZP_05405766.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
gi|2494193|sp|Q49405|DPO3A_MYCGE RecName: Full=DNA polymerase III subunit alpha
gi|1045954|gb|AAC71482.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
gi|166078627|gb|ABY79245.1| DNA polymerase III, alpha subunit [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 874
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 115 ILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKL---IPPRKNIN---- 167
+L+H K++ + I T + + +E PL N +PN ++ KK+ + K IN
Sbjct: 724 LLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYI 783
Query: 168 -NLKDTNHRLKIKNNQEIKNI 187
NL+ H ++ +NN ++ ++
Sbjct: 784 QNLQKVQHLIQTQNNLQLTDV 804
>gi|83319343|ref|YP_424108.1| oligopeptide ABC transporter, oligopeptide-binding protein,
putative [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283229|gb|ABC01161.1| oligopeptide ABC transporter, oligopeptide-binding protein,
putative [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 984
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 133 FDNTNLETKIPLPN--NLKPNVCVKEKKLIPPRKNINNLK----DTNHRLKIKNNQEIKN 186
FD ET I LPN L PN+ V+++KLIP RK + K D + + ++ +K
Sbjct: 331 FDPNADETIIMLPNLERLNPNLSVEQRKLIPQRKAVKIKKYLFTDPRQKFSKEFDELLKK 390
Query: 187 IHHKKNK 193
KNK
Sbjct: 391 SKELKNK 397
>gi|332826761|gb|EGJ99578.1| hypothetical protein HMPREF9455_04074 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1476
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 13 LKLHKNIMSKGKINESFWYIRTLF--PYLSHQIHKALMSISSGIILILSPTDCTANTANI 70
L L ++S KI S+ I F + + A MSI SG + I +P D N+
Sbjct: 637 LNLPVTVLSTSKIIGSYNNINDRFNLEIFAPSVKAAGMSIQSGYVAIRNPHDTIDAKVNV 696
Query: 71 LIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLK---ERLR 127
LI +K + K NL + I++ + Q++ N + + L L K E LR
Sbjct: 697 LIAGKKNTINDVAINAKVKDNLINTNISLVNTGAQKAMGNFSISTL----LTKNEAEPLR 752
Query: 128 TDINTF 133
DINT
Sbjct: 753 IDINTL 758
>gi|320168470|gb|EFW45369.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 546
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 59 SPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPS--QNKQESPKNANNNIL 116
+P+D + LI SRK D H +E+++ +N+ ++ + S N + PK + +IL
Sbjct: 449 APSDYDPDDIQTLIKSRKKKDNHNAIERRRRYNINDRIVELGSLLPNAEIDPKASKGSIL 508
Query: 117 ----DHIALLKERLRTDINTFDNTNLETKIP 143
D+I L++ R+ T ++P
Sbjct: 509 KRSVDYIKYLQDINRSLSEKLAQTGTVVELP 539
>gi|300870969|ref|YP_003785840.1| transporter [Brachyspira pilosicoli 95/1000]
gi|300688668|gb|ADK31339.1| transporter [Brachyspira pilosicoli 95/1000]
Length = 446
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 88 KNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNN 147
K+ L L +NKQ KN NNNI D ++K L I +++N E
Sbjct: 191 KHSFLSILLFEQQDKNKQYISKNINNNIFD---VIKYFLSMSIYIKNSSNTE-------- 239
Query: 148 LKPNVCVKEKKLIPPRKN----INNLKDTNHRLKIKNN------QEIKNIHHKKNK 193
K + V +KK IP N IN + NH KI NN +IK +++KK +
Sbjct: 240 -KGKISV-DKKFIPKMDNGSIKINEEEKLNHTEKILNNFFTSIYSDIKQVYYKKER 293
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,880,619,649
Number of Sequences: 14124377
Number of extensions: 79056716
Number of successful extensions: 258226
Number of sequences better than 10.0: 599
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 570
Number of HSP's that attempted gapping in prelim test: 256345
Number of HSP's gapped (non-prelim): 2351
length of query: 199
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 67
effective length of database: 2,978,375,866
effective search space: 199551183022
effective search space used: 199551183022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)