RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)



>gnl|CDD|163702 cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family.  Mov34 DUF2466
          (also known as DNA repair protein RadC) domain of
          unknown function contains the signature JAB1/MPN/Mov34
          metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is
          involved in zinc ion coordination and provides the
          active site for isopeptidase activity. However, to
          date, the name RadC has been misleading and no function
          has been determined.
          Length = 113

 Score = 26.6 bits (60), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 5  ILFL-IKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILI 57
          +L L  K++L +    +S G +N S  + R +F        +AL   ++ IIL 
Sbjct: 21 VLLLDTKNRL-IAVETISVGTLNSSLVHPREIF-------KEALRHNAAAIILA 66


>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
           phylogenetically conserved member of tubulin
           superfamily.  Gamma is a low abundance protein present
           within the cells in both various types of
           microtubule-organizing centers and cytoplasmic protein
           complexes.  Gamma-tubulin recruits the
           alpha/beta-tubulin dimers that form the minus ends of
           microtubules and is thought to be involved in
           microtubule nucleation and capping..
          Length = 431

 Score = 25.7 bits (57), Expect = 8.2
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 113 NNILDHIALLKERLRTDINTFDNTN 137
           N  L+ IA   +RL     TFD  N
Sbjct: 205 NTALNRIAT--DRLHIQNPTFDQIN 227


>gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine
           receptor) [Signal transduction mechanisms].
          Length = 5019

 Score = 25.4 bits (55), Expect = 9.7
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 77  IIDYHRLLEQKKNHNLQYSL 96
           ++++ +L EQ+KN+NLQ SL
Sbjct: 924 LVEFSKLPEQEKNYNLQMSL 943


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,356,237
Number of extensions: 116936
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 18
Length of query: 199
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,340,536
Effective search space: 477458960
Effective search space used: 477458960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)