RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 91/195 (46%)

Query: 27  ESF-----WYIRTLFPYL---SHQIHKALMSISSGIILILSPTDCTANTANILIPS---- 74
           ESF       I  LF ++    ++ +    S+   I+      D   N  N  +PS    
Sbjct: 290 ESFFVSVRKAITVLF-FIGVRCYEAY-PNTSLPPSIL-----EDSLEN--NEGVPSPMLS 340

Query: 75  -R--------KIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKER 125
                       ++       K N +L       P   KQ         +   I+L    
Sbjct: 341 ISNLTQEQVQDYVN-------KTNSHL-------P-AGKQ---------V--EISL---- 370

Query: 126 LRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRL-KIKNNQEI 184
               +N               NL   V        PP+    +L   N  L K K    +
Sbjct: 371 ----VNG------------AKNL---VVSG-----PPQ----SLYGLNLTLRKAKAPSGL 402

Query: 185 --KNIHHKKNKPRLH 197
               I   + K +  
Sbjct: 403 DQSRIPFSERKLKFS 417



 Score = 28.8 bits (64), Expect = 0.91
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 70  ILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKER---- 125
           +L+P+       +L EQ     L        + ++  +P       L +++ L E     
Sbjct: 20  LLVPTASFFIASQLQEQFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78

Query: 126 -----LRTDINTFDNTNLETK-I-----PLPNNLKPNVCVKEKKLI 160
                L   +  F+N  LE   I      L       + VK K+LI
Sbjct: 79  QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL-VKTKELI 123


>2o3o_A YYCI protein; two-component system, signaling protein; 2.89A
           {Bacillus subtilis}
          Length = 254

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 154 VKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNI 187
           ++++ LI     +  L   N   ++K    +K+ 
Sbjct: 169 IQKESLITEMDAVELLYYQN---QLKEYSTVKSC 199


>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
           ATPase, ATP-binding, FIMB nucleotide-binding, transport;
           HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
           3jvu_A*
          Length = 356

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 6/102 (5%)

Query: 41  HQIHKALMSISSGIILILSPTDCTANTA-NILIPSRKIIDYHRLLEQKKNHNLQYSLINI 99
            ++ K +  +  G++L+  PT    +T    ++       YH +L  +      +     
Sbjct: 112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171

Query: 100 PSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETK 141
               ++      + + L     L+  LR D +      +   
Sbjct: 172 LVNQRE-----VHRDTLGFSEALRSALREDPDIILVGEMRDL 208


>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
           protein-inhibitor complex, CNDP2, CNDP dipeptidase 2,
           bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A
           {Mus musculus} PDB: 2zof_A*
          Length = 479

 Score = 26.7 bits (57), Expect = 4.1
 Identities = 8/57 (14%), Positives = 18/57 (31%)

Query: 96  LINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNV 152
            + I S +     +     +++  A   +RL   +   D    +        L P +
Sbjct: 29  WVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPIL 85


>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG;
           2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1
           PDB: 1w2z_A*
          Length = 642

 Score = 26.1 bits (57), Expect = 5.2
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 110 NANNNILDHIALLKERLRTDI----NTFDNTNLET-KIPLPNNLKPNVCVKEKKLIPPRK 164
           N+     DH  +    L  DI    N+F+ T+L+T +I   ++ + +    E +      
Sbjct: 431 NSIGIYHDHFYIY--YLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTES 488

Query: 165 NINNLKDTNHRLKIKNNQEIKNIHHKK 191
           +            +  N  IK     +
Sbjct: 489 DAKITIGLAPAELVVVNPNIKTAVGNE 515


>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor,
           signaling protein; HET: MSE; 2.20A {Arabidopsis
           thaliana} PDB: 2nty_A* 2wbl_A
          Length = 365

 Score = 25.1 bits (55), Expect = 10.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 41  HQIHKALMSISSGIIL 56
            Q+ KA M+I++ ++ 
Sbjct: 187 TQVQKAAMAINAQVLS 202


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,646,195
Number of extensions: 71692
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 33
Length of query: 199
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 111
Effective length of database: 3,559,758
Effective search space: 395133138
Effective search space used: 395133138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)