RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)



>d1flca1 b.19.1.3 (A:151-306) Hemagglutinin domain of
           haemagglutinin-esterase-fusion glycoprotein HEF1
           {Influenza C virus [TaxId: 11552]}
          Length = 156

 Score = 24.7 bits (53), Expect = 6.1
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 95  SLIN-----IPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNNLK 149
           SL+N     IP Q    +  N NN+ L + AL  + ++   N     NL     LP    
Sbjct: 3   SLVNALDKTIPLQVTAGTAGNCNNSFLKNPALYTQEVKPSENKCGKENL-AFFTLPTQFG 61

Query: 150 PNVCVKEKKLIP 161
              C  +  L+ 
Sbjct: 62  TYEC--KLHLVA 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,352
Number of extensions: 31079
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 25
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)