BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score =  392 bits (1006), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
           MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP
Sbjct: 1   MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60

Query: 61  TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
           TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA
Sbjct: 61  TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120

Query: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
           LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN
Sbjct: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180

Query: 181 NQEIKNIHHKKNKPRLHCQ 199
           NQEIKNIHHKKNKPRLHCQ
Sbjct: 181 NQEIKNIHHKKNKPRLHCQ 199


>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 207

 Score = 27.7 bits (60), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 42  QIHKALMSISSGIILILSPT 61
           QIH A   ISSG + IL PT
Sbjct: 179 QIHGAWFDISSGKLWILDPT 198


>537021.9.peg.816_1 
          Length = 97

 Score = 25.0 bits (53), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 6  LFLIKHKLKLHKNIMSKGKINESFWYIRTL 35
          LFL KH + +   + S+G I+    YIR +
Sbjct: 1  LFLDKHNILIADEVQSRGTIDHVPVYIREI 30


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 24.6 bits (52), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 85  EQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLR--TDINTFDNTNLET 140
           E+K   +++   +NIP++   ES         D I LLK      TD  T DN   ET
Sbjct: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928


>gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 101

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 119 IALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKI 178
             + + R R  I  F N ++E K P P  +KP +    ++ I  +  I+N     H+ + 
Sbjct: 6   FGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRK 65

Query: 179 KNNQ 182
           +NN+
Sbjct: 66  ENNK 69


>gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 121

 Score = 22.7 bits (47), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 131 NTFDNTNLETKIPLPNNLKPNVCVKEKKLIPP 162
           N F + + E K     N+K  VC  +K  +PP
Sbjct: 88  NAFWDLSDEDKNAFTGNVKQEVCKVKKITVPP 119


>gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 177

 Score = 22.3 bits (46), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 148 LKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHH 189
           ++ +  + EK L  P KNI +L D+    +   N  ++ + H
Sbjct: 97  MEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEH 138


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,759
Number of Sequences: 1233
Number of extensions: 6270
Number of successful extensions: 28
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 17
length of query: 199
length of database: 328,796
effective HSP length: 70
effective length of query: 129
effective length of database: 242,486
effective search space: 31280694
effective search space used: 31280694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)