HHsearch alignment for GI: 254780683 and conserved domain: COG0739
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].
Probab=99.92 E-value=1.7e-25 Score=155.12 Aligned_cols=82 Identities=39% Similarity=0.771 Sum_probs=77.1
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCE---ECCHHH
Q ss_conf 59996069865511999998998899841156344112002203124899805788888569999978689---805269
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAI---AMDPIK 77 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~---~vdP~~ 77 (84)
T Consensus 183 ~V~~~~~~~~~yGn~v~i~H~~g~~t~Y~Hl~~~~V~~G~~V~~G~~Ig~~G~tG~stgphLHfev~~~g~~~~~~~p~~ 262 (277)
T COG0739 183 VVVFAGNGGWGYGNLVIIKHGDGYVTVYAHLSSILVKEGQKVKAGQVIGYVGSTGRSTGPHLHFEVRKNGKLVPPVNPAR 262 (277)
T ss_pred EEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf 89997047666770899974896588996065013158978846978997257677579758898875870367578556
Q ss_pred HHHCC
Q ss_conf 87503
Q gi|254780683|r 78 FLEEK 82 (84)
Q Consensus 78 ~l~~k 82 (84)
T Consensus 263 ~l~~~ 267 (277)
T COG0739 263 YLPKG 267 (277)
T ss_pred HCCCC
T ss_conf 22444