Query gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 84
No_of_seqs 112 out of 5508
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 09:54:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780683.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qwya_ b.84.3.2 (A:) Peptidog 99.9 9.5E-26 6.9E-30 154.1 7.6 80 1-80 186-270 (270)
2 d1ci3m2 b.84.2.2 (M:170-231) C 91.0 0.17 1.2E-05 25.9 4.8 37 13-49 21-59 (62)
3 d1e2wa2 b.84.2.2 (A:169-232) C 90.9 0.11 8.2E-06 26.9 3.8 37 13-49 23-61 (64)
4 d1vf7a_ f.46.1.1 (A:) Multidru 88.5 0.084 6.1E-06 27.5 1.6 26 29-54 24-49 (237)
5 d2gpra_ b.84.3.1 (A:) Glucose 87.1 0.4 2.9E-05 24.0 4.4 42 11-53 60-112 (154)
6 d1gpra_ b.84.3.1 (A:) Glucose 86.3 0.39 2.9E-05 24.0 4.0 41 12-53 63-114 (158)
7 d2f3ga_ b.84.3.1 (A:) Glucose- 86.3 0.39 2.9E-05 24.0 4.0 41 12-53 55-106 (150)
8 d1qjoa_ b.84.1.1 (A:) Lipoyl d 81.0 0.32 2.4E-05 24.5 1.8 25 31-55 17-41 (80)
9 d1bdoa_ b.84.1.1 (A:) Biotinyl 78.5 0.51 3.7E-05 23.4 2.1 24 32-55 23-46 (80)
10 d1gjxa_ b.84.1.1 (A:) Lipoyl d 77.5 0.45 3.3E-05 23.7 1.6 23 32-54 19-41 (81)
11 d1ghja_ b.84.1.1 (A:) Lipoyl d 76.4 0.61 4.5E-05 23.0 2.0 27 29-55 16-42 (79)
12 d1laba_ b.84.1.1 (A:) Lipoyl d 75.2 0.37 2.7E-05 24.2 0.6 23 32-54 19-41 (80)
13 d1dcza_ b.84.1.1 (A:) Biotin c 72.7 0.67 4.9E-05 22.8 1.5 25 31-55 19-43 (77)
14 d1iyua_ b.84.1.1 (A:) Lipoyl d 70.3 3.3 0.00024 19.1 5.5 24 31-54 15-38 (79)
15 d1pmra_ b.84.1.1 (A:) Lipoyl d 69.8 0.83 6E-05 22.3 1.4 26 29-54 17-42 (80)
16 d1k8ma_ b.84.1.1 (A:) Lipoyl d 64.4 1.9 0.00014 20.4 2.3 26 30-55 20-45 (87)
17 d1y8ob1 b.84.1.1 (B:128-229) L 62.9 1.8 0.00013 20.5 2.1 22 33-54 24-45 (102)
18 d1brwa3 d.41.3.1 (A:331-433) P 59.2 2 0.00015 20.2 1.8 21 34-54 50-70 (103)
19 d1tu2b2 b.84.2.2 (B:170-235) C 58.3 1.3 9.5E-05 21.3 0.6 36 12-48 24-62 (66)
20 d1hcza2 b.84.2.2 (A:168-230) C 57.7 1.3 9.8E-05 21.2 0.6 35 13-48 22-60 (63)
21 d2tpta3 d.41.3.1 (A:336-440) T 55.1 2.1 0.00015 20.2 1.2 21 34-54 50-70 (105)
22 d1uoua3 d.41.3.1 (A:374-480) T 52.8 3 0.00022 19.3 1.8 22 34-55 48-69 (105)
23 d1vf5c2 b.84.2.2 (C:170-231) C 50.9 1.6 0.00012 20.7 0.2 35 13-48 25-62 (62)
24 d1o4ua2 d.41.2.1 (A:1-103) Qui 32.8 11 0.00079 16.4 2.0 19 34-52 63-81 (103)
25 d1qapa2 d.41.2.1 (A:8-129) Qui 29.1 12 0.00088 16.2 1.8 19 34-52 82-100 (122)
26 d1qpoa2 d.41.2.1 (A:2-116) Qui 27.9 13 0.00093 16.0 1.7 17 36-52 77-93 (115)
No 1
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}
Probab=99.92 E-value=9.5e-26 Score=154.06 Aligned_cols=80 Identities=33% Similarity=0.510 Sum_probs=74.2
Q ss_pred CEEEECCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECC----EECCH
Q ss_conf 59996069865511999998998-89984115634411200220312489980578888856999997868----98052
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDS-IVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNA----IAMDP 75 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g-~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g----~~vdP 75 (84)
+|+++++...++|++|+|+|+++ +.++|+||+++.|++||.|++||+||++|+||++++||||||||+++ ++|||
T Consensus 186 ~V~~ag~~~~g~G~~V~I~h~~g~~~t~Y~hl~~~~V~~Gq~V~~Gq~IG~vGsTG~stgpHLHFEi~~~g~~~~~~VDP 265 (270)
T d1qwya_ 186 TVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDP 265 (270)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEECCCTTCEECTTCEEEECCCCSSCSSSEEEEEEEESEESGGGEECC
T ss_pred EEEEEEECCCCCCEEEEEEECCCCEEEEEEECCEEECCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEECC
T ss_conf 99998975679986999970898879999837721138899998689999967889989977999999899179768394
Q ss_pred HHHHH
Q ss_conf 69875
Q gi|254780683|r 76 IKFLE 80 (84)
Q Consensus 76 ~~~l~ 80 (84)
++||+
T Consensus 266 ~~~Lk 270 (270)
T d1qwya_ 266 TSYLQ 270 (270)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 79739
No 2
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=91.01 E-value=0.17 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=28.5
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 11999998998899841--15634411200220312489
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
+..|+|...+|-...|. .-..+.|+.||.|++||.|-
T Consensus 21 ~~~I~I~~~~G~~~~y~Ip~g~~l~V~eGd~V~aG~~LT 59 (62)
T d1ci3m2 21 SAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAALT 59 (62)
T ss_dssp CEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBSB
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 889999999998999986899987887999995897146
No 3
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=90.86 E-value=0.11 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.4
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 11999998998899841--15634411200220312489
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
+..|+|...+|-...|. +-..+.|++||.|++||.|-
T Consensus 23 ~~~I~I~~~dGe~~~y~Ip~g~~l~V~eGd~V~~G~~LT 61 (64)
T d1e2wa2 23 GFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLT 61 (64)
T ss_dssp CEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBCB
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 589999999999999974799868888999995897356
No 4
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.49 E-value=0.084 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=21.5
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 11563441120022031248998057
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.+.++.|++||.|++||+|.....+
T Consensus 24 G~V~~v~V~~G~~VkkGq~L~~ld~~ 49 (237)
T d1vf7a_ 24 GIILKRLFKEGSDVKAGQQLYQIDPA 49 (237)
T ss_dssp EEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEEEECCCCCEECCCCEEEEEEHH
T ss_conf 89999987994998899999998238
No 5
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=87.12 E-value=0.4 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
..+..+.|+..+|... .-|+ + +..|++||+|++||+|.++..
T Consensus 60 ~T~HAigi~t~~G~ei-LIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 112 (154)
T d2gpra_ 60 PTKHAFGIQTKSGVEI-LLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp TTCSEEEEECTTSCEE-EEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred CCCCEEEEEECCCCEE-EEEECCCCCCCCCCEEEEEECCCCEECCCCEEEEECH
T ss_conf 7896999991899899-9997636101588326899548999908999999859
No 6
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=86.31 E-value=0.39 Score=24.01 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 51199999899889984115--6---------344112002203124899805
Q gi|254780683|r 12 LGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 12 ~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
.+..+.|+..+|... .-|+ + +..|++||+|++||+|.++..
T Consensus 63 T~HAigi~t~~G~ev-LiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~ 114 (158)
T d1gpra_ 63 TKHAIGLQSDGGREI-LIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 114 (158)
T ss_dssp TSSEEEEEETTSCEE-EEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECH
T ss_pred CCCEEEEEECCCEEE-EEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 997999994897299-9998005201489606999868999968989777589
No 7
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=86.30 E-value=0.39 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCEEEEEECCCCEEEEEECCC-----------CCCCCCCEEEECCEEEEEECC
Q ss_conf 511999998998899841156-----------344112002203124899805
Q gi|254780683|r 12 LGNTILIRHDDSIVTVYSHID-----------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 12 ~G~~V~I~h~~g~~t~Y~hl~-----------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
.+..+.|+..+|... .-|+. +..|++||+|++||+|.++..
T Consensus 55 T~HAigi~t~~G~ei-LIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 106 (150)
T d2f3ga_ 55 TNHAFSIESDSGVEL-FVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 106 (150)
T ss_dssp TSSEEEEEETTSCEE-EEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CCCEEEEEECCCEEE-EEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 898999992893399-9997645542488414899568999889999999859
No 8
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}
Probab=81.05 E-value=0.32 Score=24.45 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=16.1
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-++.+++||.|++||.|..+-...
T Consensus 17 v~~~~v~~Gd~V~~g~~l~~iEt~K 41 (80)
T d1qjoa_ 17 VTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp EEECCCCTTCEECBTSEEEEEESSS
T ss_pred EEEEEECCCCEECCCCEEEEEECCC
T ss_conf 9999817989997999899999576
No 9
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}
Probab=78.45 E-value=0.51 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.2
Q ss_pred CCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 634411200220312489980578
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
.+++|+.||.|++||.|+.+-...
T Consensus 23 ~~~~V~~Gd~V~~Gq~l~~iEamK 46 (80)
T d1bdoa_ 23 AKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp SCCSCCTTCEECTTCEEEEEEETT
T ss_pred CCEECCCCCEEECCCEEEEEECCC
T ss_conf 880912798590899999999176
No 10
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Probab=77.49 E-value=0.45 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=12.6
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.+..+++||.|++||.|..+-.+
T Consensus 19 ~~w~v~~Gd~V~~gd~l~~iEt~ 41 (81)
T d1gjxa_ 19 IAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEECCCCEECCCCEEEEEECC
T ss_conf 99981898999799989999947
No 11
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}
Probab=76.42 E-value=0.61 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=16.7
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..++.||.|++||.|..+-.+.
T Consensus 16 g~i~~w~v~~Gd~V~~gd~l~~vEt~K 42 (79)
T d1ghja_ 16 GTVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp EEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred EEEEEEECCCCCEEEECCCEEEEECCC
T ss_conf 999999838999996086699998572
No 12
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=75.19 E-value=0.37 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=14.3
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.++.+++||.|++||.|..+-.+
T Consensus 19 ~~w~v~~Gd~V~~gd~l~~vEt~ 41 (80)
T d1laba_ 19 VKWFVKPGDEVNEDDVLCEVQND 41 (80)
T ss_dssp EECCCSSCCEECSSCCCEEEECS
T ss_pred EEEEECCCCEEEECCCEEEEECC
T ss_conf 99991799999607279999826
No 13
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=72.72 E-value=0.67 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.|++||.|++||.|+.+....
T Consensus 19 v~~~~V~~Gd~V~~G~~l~~vE~~K 43 (77)
T d1dcza_ 19 VSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp EEEECCCTTCEECTTSEEEEEEETT
T ss_pred EEEEECCCCCEEECCCEEEEEECCC
T ss_conf 9999967999995897699999367
No 14
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=70.31 E-value=3.3 Score=19.13 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=15.0
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.|++||.|++||.|..+-..
T Consensus 15 i~~~~v~~Gd~V~~gd~l~~iE~~ 38 (79)
T d1iyua_ 15 VIELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEEEECCCCEEECCCEEEEEEEC
T ss_conf 999993699999368519999936
No 15
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}
Probab=69.76 E-value=0.83 Score=22.29 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=15.8
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 11563441120022031248998057
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+-+.+..++.||.|++||.|..+-.+
T Consensus 17 g~i~~w~v~~Gd~V~~gd~l~~vEtd 42 (80)
T d1pmra_ 17 ATVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp EECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 99999990799999279989999857
No 16
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.42 E-value=1.9 Score=20.42 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=18.4
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 15634411200220312489980578
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
-+.+..+++||.|++||.|..+-.+.
T Consensus 20 ~i~~w~v~~Gd~V~~g~~l~~vEt~K 45 (87)
T d1k8ma_ 20 TVKEWYVKEGDTVSQFDSICEVQSDK 45 (87)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECSS
T ss_pred EEEEEECCCCCEEECCCEEEEEECCC
T ss_conf 99999817999991699899998467
No 17
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.87 E-value=1.8 Score=20.46 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=10.8
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+..++.||.|++||.|..+-.+
T Consensus 24 ~w~v~~Gd~V~~gd~l~~vETd 45 (102)
T d1y8ob1 24 RWEKKVGEKLSEGDLLAEIETD 45 (102)
T ss_dssp EECSCTTCEECTTCEEEEEECS
T ss_pred EEEECCCCEEECCCCEEEEECC
T ss_conf 9990899999637529999848
No 18
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=59.24 E-value=2 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.9
Q ss_pred CCCCCCEEEECCEEEEEECCC
Q ss_conf 441120022031248998057
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.||.|++||+|.++=.+
T Consensus 50 l~~k~Gd~V~~Gd~l~~i~~~ 70 (103)
T d1brwa3 50 LHKKIGDRVQKGEALATIHSN 70 (103)
T ss_dssp ESCCTTCEECTTCEEEEEEES
T ss_pred EECCCCCEECCCCEEEEEECC
T ss_conf 962689997699949999858
No 19
>d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]}
Probab=58.28 E-value=1.3 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=25.6
Q ss_pred CCEEEEEECCCCEEE---EEECCCCCCCCCCEEEECCEEE
Q ss_conf 511999998998899---8411563441120022031248
Q gi|254780683|r 12 LGNTILIRHDDSIVT---VYSHIDTPYVQKGQKVSRGHTI 48 (84)
Q Consensus 12 ~G~~V~I~h~~g~~t---~Y~hl~~i~v~~G~~V~~G~~I 48 (84)
++..|.|+..+|-.. +=... ++.|++||.|++||.|
T Consensus 24 ~~~~v~I~t~~G~~v~e~IP~Gp-eLiVseG~~VkadqpL 62 (66)
T d1tu2b2 24 VKYLVDIKTESGEVVSDTIPAGP-ELIVSEGQAVTAGDAL 62 (66)
T ss_dssp EEEEEEEETTTTEEECCEECSSC-CBSCCTTCEECTTCBS
T ss_pred EEEEEEEECCCCCEEEEECCCCC-EEEECCCCEEECCCCC
T ss_conf 27999986599989877518998-6898289889669866
No 20
>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]}
Probab=57.71 E-value=1.3 Score=21.18 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=23.2
Q ss_pred CEEEEEE-CCCCEE---EEEECCCCCCCCCCEEEECCEEE
Q ss_conf 1199999-899889---98411563441120022031248
Q gi|254780683|r 13 GNTILIR-HDDSIV---TVYSHIDTPYVQKGQKVSRGHTI 48 (84)
Q Consensus 13 G~~V~I~-h~~g~~---t~Y~hl~~i~v~~G~~V~~G~~I 48 (84)
|+.|.|. ..+|.. ++=... ++.|++||.|++||.|
T Consensus 22 gy~vtI~~~~dg~~v~~~IP~Gp-eLiVseG~~V~adqpL 60 (63)
T d1hcza2 22 GYEITIVDASNERQVIDIIPRGL-ELLVSEGESIKLDQPL 60 (63)
T ss_dssp CEEEEEEETTTTEEEEEEECTTC-CBCCCTTCEECTTCBS
T ss_pred CEEEEEEECCCCCEEEEECCCCC-EEEECCCCEEECCCCC
T ss_conf 78999986589978888619998-5898089999779756
No 21
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=55.06 E-value=2.1 Score=20.19 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.9
Q ss_pred CCCCCCEEEECCEEEEEECCC
Q ss_conf 441120022031248998057
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.||.|++||+|.++=.+
T Consensus 50 l~~k~Gd~V~~Gd~l~~i~~~ 70 (105)
T d2tpta3 50 DMARLGDQVDGQRPLAVIHAK 70 (105)
T ss_dssp SCCCTTCEEBTTBCSEEEEES
T ss_pred EEECCCCEECCCCEEEEEECC
T ss_conf 983588997699959999779
No 22
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.80 E-value=3 Score=19.35 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.||.|++||+|.++=.+.
T Consensus 48 l~~k~Gd~V~~G~~l~~ih~~~ 69 (105)
T d1uoua3 48 LLVDVGQRLRRGTPWLRVHRDG 69 (105)
T ss_dssp ECSCTTCEECTTCEEEEEEESS
T ss_pred EEECCCCEECCCCEEEEEECCC
T ss_conf 9605889986999399998898
No 23
>d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain {Mastigocladus laminosus [TaxId: 83541]}
Probab=50.92 E-value=1.6 Score=20.72 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=23.6
Q ss_pred CEEEEEECCCCEEE---EEECCCCCCCCCCEEEECCEEE
Q ss_conf 11999998998899---8411563441120022031248
Q gi|254780683|r 13 GNTILIRHDDSIVT---VYSHIDTPYVQKGQKVSRGHTI 48 (84)
Q Consensus 13 G~~V~I~h~~g~~t---~Y~hl~~i~v~~G~~V~~G~~I 48 (84)
|+-|.|+..+|-.. +=... ++.|++||.|++||.|
T Consensus 25 gy~vtI~t~dG~~v~~~IP~Gp-eLiVseG~~VkadqpL 62 (62)
T d1vf5c2 25 KYQVSIQTDSGKTVVDTIPAGP-ELIVSEGQAVKAGEAL 62 (62)
T ss_dssp CCCCBCCCCSSSCCCCCCCSSS-CCCCCTTCCCTTSCCC
T ss_pred CEEEEEECCCCCEEEEEECCCC-EEEECCCCEEECCCCC
T ss_conf 2699998799999887408998-5897389888579879
No 24
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.78 E-value=11 Score=16.39 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.5
Q ss_pred CCCCCCEEEECCEEEEEEC
Q ss_conf 4411200220312489980
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSG 52 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg 52 (84)
..++.|+.|++|+.|.++-
T Consensus 63 ~~~~dG~~v~~g~~I~~i~ 81 (103)
T d1o4ua2 63 FNVEDGEYLEGTGVIGEIE 81 (103)
T ss_dssp ESCCTTCEEESCEEEEEEE
T ss_pred EECCCCCEEECCCEEEEEE
T ss_conf 6537799877594599995
No 25
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.11 E-value=12 Score=16.15 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=16.1
Q ss_pred CCCCCCEEEECCEEEEEEC
Q ss_conf 4411200220312489980
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSG 52 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg 52 (84)
..++.|+.|++|+.|+++-
T Consensus 82 ~~~~DG~~v~~G~~i~~i~ 100 (122)
T d1qapa2 82 WHVDDGDAIHANQTVFELQ 100 (122)
T ss_dssp ESCCTTCEECTTCEEEEEE
T ss_pred ECCCCCCEEECCCEEEEEE
T ss_conf 3246732786484699998
No 26
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.89 E-value=13 Score=16.02 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCCCEEEECCEEEEEEC
Q ss_conf 11200220312489980
Q gi|254780683|r 36 VQKGQKVSRGHTIGLSG 52 (84)
Q Consensus 36 v~~G~~V~~G~~IG~vg 52 (84)
++.|+.|++|+.|+++-
T Consensus 77 ~~DG~~v~~G~~I~~i~ 93 (115)
T d1qpoa2 77 VEDGARVPPGEALMTLE 93 (115)
T ss_dssp CCTTCEECTTCEEEEEE
T ss_pred CCCCCEEECCEEEEEEE
T ss_conf 47878872240499983
Done!