RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural
           genomics, PSI, protein structure initiative; 1.90A
           {Vibrio cholerae} (A:206-361)
          Length = 156

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 26/78 (33%), Positives = 38/78 (48%)

Query: 2   VIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61
            + V       GN ++I H+    T Y H+D   V+KGQ V RG  I L+G +G    P 
Sbjct: 47  KVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTGPH 106

Query: 62  VHFELRKNAIAMDPIKFL 79
           +HFE+      +D +K  
Sbjct: 107 LHFEVLVRNRPVDAMKAD 124


>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease
           asparagine switch; 1.30A {Staphylococcus aureus subsp}
           (A:83-291)
          Length = 209

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 2   VIYVGNDLVELGNTILIRHDDSIVTVYSH-IDTPYVQKGQKVSRGHTIGLSGKSGNAQHP 60
           V+  G      GN + I+  +S    +    +   V  G KV  G  I  SG +GN+  P
Sbjct: 124 VVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAP 183

Query: 61  QVHFELRKNAI----AMDPIKFLEEK 82
            VHF+     I    A+DP  +L+ +
Sbjct: 184 HVHFQRMSGGIGNQYAVDPTSYLQSR 209


>3it5_A Protease LASA; metallopeptidase, beta-protein, cell
           membrane, cell outer membrane, hydrolase, membrane,
           metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB:
           3it7_A* (A:1-134,A:171-182)
          Length = 146

 Score = 64.8 bits (157), Expect = 4e-12
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 14  NTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGL--------SGKSGNAQHPQVHFE 65
             + + H     T Y H+D   V  GQ+VS    +G+          + G++  P +HF 
Sbjct: 65  CQVRVTHPSGWATNYYHMDQIQVSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFS 124

Query: 66  LRKNAIAMDP 75
           L  N   +  
Sbjct: 125 LLYNGAFVSL 134


>2hsi_A Putative peptidase M23; structural genomics, PSI, protein
           structure initiative, NEW YORK SGX research center for
           structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
           (A:116-267)
          Length = 152

 Score = 64.5 bits (156), Expect = 5e-12
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 2   VIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61
           VI +G+     G T+ + H    ++++ H+    V+ GQ+V RG  +G  G +G A  P 
Sbjct: 86  VILIGDY-FFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPH 144

Query: 62  VHFELRKN 69
           +H+ +  N
Sbjct: 145 MHWNVSLN 152


>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein;
           1.80A {Bacteriophage phi-29} (A:166-334)
          Length = 169

 Score = 64.0 bits (155), Expect = 7e-12
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 2   VIYVGNDLVE--LGNTILIRHDDSIVTVYSHI----DTPYVQKGQKVSRGHTIGLSGKSG 55
            ++ G+        +   +   D  V   + +           G+K+ +G  +G +G  G
Sbjct: 48  CVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGIGG 107

Query: 56  NAQHPQVHFELRKN----AIAMDPIKFLEEK 82
           N      HF +            P   L   
Sbjct: 108 NVTGDHWHFNVIDGKEYQGWTKKPDSCLAGT 138


>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA
           polymerase, structural genomics, marseilles structural
           genomics program @ AFMB, MSGP; 2.35A {Kunjin virus} PDB:
           2hcs_A 2hfz_A (A:1-40,A:426-595)
          Length = 210

 Score = 30.9 bits (70), Expect = 0.054
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 8   DLVELGNTILIRHDDSIV---TVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQH 59
           D++E+ N + I  ++ +     V    D PY  K + +  G  IG   ++  A++
Sbjct: 118 DMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAEN 172


>2j7u_A RNA dependent RNA polymerase; nucleoside binding site,
           flavivirus, high-throughput assay, viral protein; HET:
           PGE; 1.85A {Dengue virus} PDB: 2j7w_A*
           (A:1-89,A:268-335,A:466-635)
          Length = 327

 Score = 30.2 bits (68), Expect = 0.11
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 8   DLVELGNTILIR-----HDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQH 59
           D++ + N + I       D + VT +   + PY+ K +    G  IGL+ ++  AQ+
Sbjct: 235 DMLTVWNRVWIEENPWMEDKTPVTTWE--NVPYLGKREDQWCGSLIGLTSRATWAQN 289


>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus
          kodakarensis KOD1} PDB: 2cw7_A (A:149-161,A:227-269)
          Length = 56

 Score = 25.2 bits (55), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 47 TIGLSGK---SGNAQHPQVHFELRKNAIAMDPIKFLEE 81
          TI + GK   +GN +   V F   ++A+ + P+K L+E
Sbjct: 7  TIPVKGKVRYNGNKREYLVEFNSIRDAVGIXPLKELKE 44


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 629,086
Number of extensions: 21780
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 13
Length of query: 84
Length of database: 4,956,049
Length adjustment: 47
Effective length of query: 37
Effective length of database: 3,367,214
Effective search space: 124586918
Effective search space used: 124586918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)