RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62] (84 letters) >2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:206-361) Length = 156 Score = 68.6 bits (167), Expect = 2e-13 Identities = 26/78 (33%), Positives = 38/78 (48%) Query: 2 VIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61 + V GN ++I H+ T Y H+D V+KGQ V RG I L+G +G P Sbjct: 47 KVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTGPH 106 Query: 62 VHFELRKNAIAMDPIKFL 79 +HFE+ +D +K Sbjct: 107 LHFEVLVRNRPVDAMKAD 124 >1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} (A:83-291) Length = 209 Score = 66.6 bits (161), Expect = 1e-12 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 2 VIYVGNDLVELGNTILIRHDDSIVTVYSH-IDTPYVQKGQKVSRGHTIGLSGKSGNAQHP 60 V+ G GN + I+ +S + + V G KV G I SG +GN+ P Sbjct: 124 VVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAP 183 Query: 61 QVHFELRKNAI----AMDPIKFLEEK 82 VHF+ I A+DP +L+ + Sbjct: 184 HVHFQRMSGGIGNQYAVDPTSYLQSR 209 >3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* (A:1-134,A:171-182) Length = 146 Score = 64.8 bits (157), Expect = 4e-12 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 14 NTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGL--------SGKSGNAQHPQVHFE 65 + + H T Y H+D V GQ+VS +G+ + G++ P +HF Sbjct: 65 CQVRVTHPSGWATNYYHMDQIQVSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFS 124 Query: 66 LRKNAIAMDP 75 L N + Sbjct: 125 LLYNGAFVSL 134 >2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} (A:116-267) Length = 152 Score = 64.5 bits (156), Expect = 5e-12 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 2 VIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61 VI +G+ G T+ + H ++++ H+ V+ GQ+V RG +G G +G A P Sbjct: 86 VILIGDY-FFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPH 144 Query: 62 VHFELRKN 69 +H+ + N Sbjct: 145 MHWNVSLN 152 >3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} (A:166-334) Length = 169 Score = 64.0 bits (155), Expect = 7e-12 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 10/91 (10%) Query: 2 VIYVGNDLVE--LGNTILIRHDDSIVTVYSHI----DTPYVQKGQKVSRGHTIGLSGKSG 55 ++ G+ + + D V + + G+K+ +G +G +G G Sbjct: 48 CVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGIGG 107 Query: 56 NAQHPQVHFELRKN----AIAMDPIKFLEEK 82 N HF + P L Sbjct: 108 NVTGDHWHFNVIDGKEYQGWTKKPDSCLAGT 138 >2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase, structural genomics, marseilles structural genomics program @ AFMB, MSGP; 2.35A {Kunjin virus} PDB: 2hcs_A 2hfz_A (A:1-40,A:426-595) Length = 210 Score = 30.9 bits (70), Expect = 0.054 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 8 DLVELGNTILIRHDDSIV---TVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQH 59 D++E+ N + I ++ + V D PY K + + G IG ++ A++ Sbjct: 118 DMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAEN 172 >2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, viral protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A* (A:1-89,A:268-335,A:466-635) Length = 327 Score = 30.2 bits (68), Expect = 0.11 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Query: 8 DLVELGNTILIR-----HDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQH 59 D++ + N + I D + VT + + PY+ K + G IGL+ ++ AQ+ Sbjct: 235 DMLTVWNRVWIEENPWMEDKTPVTTWE--NVPYLGKREDQWCGSLIGLTSRATWAQN 289 >2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis KOD1} PDB: 2cw7_A (A:149-161,A:227-269) Length = 56 Score = 25.2 bits (55), Expect = 3.1 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Query: 47 TIGLSGK---SGNAQHPQVHFELRKNAIAMDPIKFLEE 81 TI + GK +GN + V F ++A+ + P+K L+E Sbjct: 7 TIPVKGKVRYNGNKREYLVEFNSIRDAVGIXPLKELKE 44 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 629,086 Number of extensions: 21780 Number of successful extensions: 62 Number of sequences better than 10.0: 1 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 13 Length of query: 84 Length of database: 4,956,049 Length adjustment: 47 Effective length of query: 37 Effective length of database: 3,367,214 Effective search space: 124586918 Effective search space used: 124586918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)