RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62] (84 letters) >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Length = 270 Score = 76.6 bits (188), Expect = 6e-16 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Query: 2 VIYVGNDLVELGNTILIRHDDS-IVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHP 60 V+ G GN + I+ +S Y H + V G KV G I SG +GN+ P Sbjct: 187 VVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAP 246 Query: 61 QVHFELRKNAI----AMDPIKFLE 80 VHF+ I A+DP +L+ Sbjct: 247 HVHFQRMSGGIGNQYAVDPTSYLQ 270 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 307,917 Number of extensions: 11165 Number of successful extensions: 21 Number of sequences better than 10.0: 1 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 1 Length of query: 84 Length of database: 2,407,596 Length adjustment: 49 Effective length of query: 35 Effective length of database: 1,734,826 Effective search space: 60718910 Effective search space used: 60718910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.3 bits)