HHsearch alignment for GI: 254780684 and conserved domain: COG0055
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=635.33 Aligned_cols=412 Identities=27% Similarity=0.414 Sum_probs=373.0
Q ss_pred EEEEEEEECCEEEEECCC--CCCCCCCEEEEECCC-CCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECCC-CEEEC
Q ss_conf 128999952589998268--888735189995699-607999997-4199799998048557467888997288-55524
Q gi|254780684|r 23 GGYISSITSVYYTVTCLS--QYVCLGDFVVHQGKN-SDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWGR-FRISP 97 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~--~~v~iGelv~i~~~~-~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~v 97 (438)
T Consensus 3 ~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPV 82 (468)
T COG0055 3 KGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPV 82 (468)
T ss_pred CCEEEEEEEEEEEEEECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEC
T ss_conf 75699998217999805866672043452643577525753068773888389999637567103747750799668752
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 6668865430776304788777555-301211254333000133110011124587520022358503752667889999
Q gi|254780684|r 98 SACWCGRVINALGKPIDGDDSLGKG-DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKST 176 (438)
Q Consensus 98 G~~lLGRViD~lG~PlDg~~~l~~~-~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~ 176 (438)
T Consensus 83 G~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKTV 162 (468)
T COG0055 83 GKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTV 162 (468)
T ss_pred CHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCEE
T ss_conf 63221231020477346668887555502012579983554077304433073689984111468644442367756201
Q ss_pred HHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 99998740---78983899312465223889999864277-55328984157788034444445677788886426-798
Q gi|254780684|r 177 LLSMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSK-GDN 251 (438)
Q Consensus 177 Ll~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~-G~~ 251 (438)
T Consensus 163 l~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqd 242 (468)
T COG0055 163 LIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQD 242 (468)
T ss_pred EHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCE
T ss_conf 09999999999749868997135321115778999986388773269996057998641455112331999864003875
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
T Consensus 243 VLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIt--stk~GSITSiQavyvPaDDlTDPapattFaH 320 (468)
T COG0055 243 VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIT--STKKGSITSVQAVYVPADDLTDPAPATTFAH 320 (468)
T ss_pred EEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 89984255677623138999845696414567406778888999975--3788866889999861323789525556551
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCC-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 260898704277589713114456400022-1208999999999999999999999999985234469998999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLA-DKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQV 410 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~-~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~ 410 (438)
T Consensus 321 LDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdE-Lseedk~~V~rA 399 (468)
T COG0055 321 LDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDE-LSEEDKLTVARA 399 (468)
T ss_pred CCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHH
T ss_conf 3441356376786688766584434220158641458999999999999999899999999838321-286678999999
Q ss_pred HHHHHHHCCCC-------CCCCCHHHHHHHHHHC
Q ss_conf 99999835998-------8899976899999870
Q gi|254780684|r 411 PIIYDFLKQSP-------SDLSSEDVFQEITKKL 437 (438)
Q Consensus 411 ~~i~~fl~Q~~-------~e~~~~~~~~~~~~~l 437 (438)
T Consensus 400 rki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~f 433 (468)
T COG0055 400 RKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGF 433 (468)
T ss_pred HHHHHHHCCCCHHHHHCCCCCCEEEEHHHHHHHH
T ss_conf 9999985586201210048996164489999999