HHsearch alignment for GI: 254780684 and conserved domain: COG0056
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=786.31 Aligned_cols=415 Identities=27% Similarity=0.390 Sum_probs=392.3
Q ss_pred HHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999997413342-12012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
T Consensus 10 ~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~-~~~~~E~~ef~---~~v~G~alnle~d~VG~vi~g~~~~i~eG 85 (504)
T COG0056 10 SLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLE-NVMAGELVEFP---GGVKGMALNLEEDSVGAVILGDYSDIKEG 85 (504)
T ss_pred HHHHHHHHHCCHHHHHHCCCEEEEEECCEEEEECCC-HHHCCCEEEEC---CCCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 999999971253443211644999725469994474-35328459916---99379998503242469996697664578
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
T Consensus 86 ~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~-~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQR 164 (504)
T COG0056 86 DEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDAT-KTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQR 164 (504)
T ss_pred CEEEEECCEEEEECCHHHCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 678850756887635665140566889826898975423-3573302078503044238334420577764056578833
Q ss_pred EEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 375266788999999--9987407898389931246522388999986427-7553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
T Consensus 165 ELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~yTiVV~AsASd~a~lqYLaPy~g~a 244 (504)
T COG0056 165 ELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCA 244 (504)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 78751576783110278898355689479999815437789999999997597513399981477623555530225558
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367--8852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~d 318 (438)
T Consensus 245 ~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqag 324 (504)
T COG0056 245 MAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAG 324 (504)
T ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
T ss_conf 89999865974899960741889999999998369998657888640011799999886202458872475116886168
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
T Consensus 325 DvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYrel~afsqf~s---d 401 (504)
T COG0056 325 DVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGS---D 401 (504)
T ss_pred CEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 6623403545884077078506466468885325784265165188999999998789999999998999875400---2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 998999999999999998359988899976
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
T Consensus 402 Ld~~T~~~l~~G~r~~ellkQ~~~~p~sv~ 431 (504)
T COG0056 402 LDKATRKQLERGKRLTELLKQPQYSPLSVE 431 (504)
T ss_pred HCHHHHHHHHCCHHHHHHHCCCCCCCCCHH
T ss_conf 179899999713799999667788875388