HHsearch alignment for GI: 254780684 and conserved domain: COG0488
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].
Probab=94.10 E-value=0.051 Score=33.72 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=66.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---C-----EEEEECCCCCHH------HHHHHHHHH--------
Q ss_conf 520022358503752667889999999987407898---3-----899312465223------889999864--------
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD---K-----VIISLVGERGRE------VREFIEDYL-------- 210 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d---v-----~V~alIGeR~re------v~efi~~~~-------- 210 (438)
T Consensus 340 ~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV 419 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 72677658988999899987789999998521356772599579678999870031027667799999864654328999
Q ss_pred ----CC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH--HHHHHHHHCCCCCCCCCCC
Q ss_conf ----27-7553289841577880344444456777888864267988999709899999--9876654047784323663
Q gi|254780684|r 211 ----GD-NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAH--SIREIATNSGELPVARGYP 283 (438)
Q Consensus 211 ----~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~--A~reis~~~ge~P~~~gyp 283 (438)
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~------~pNvL-lLDEPTNhLDi~s~eaLe~aL------~~f~ 486 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ------PPNLL-LLDEPTNHLDIESLEALEEAL------LDFE 486 (530)
T ss_pred HHHHHHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCC------CCCEE-EECCCCCCCCHHHHHHHHHHH------HHCC
T ss_conf 9999984998679639522258779999999998566------99789-972898767988999999999------8589
Q ss_pred HHHH-HHC-CHHHHHHH
Q ss_conf 2455-420-04444431
Q gi|254780684|r 284 TSVF-SEL-PRLLERIG 298 (438)
Q Consensus 284 ~~~~-~~~-~~l~ERag 298 (438)
T Consensus 487 Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 487 GTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CEEEEEECCHHHHHHHC
T ss_conf 86999948999998333