HHsearch alignment for GI: 254780684 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=100.00 E-value=3.9e-32 Score=253.42 Aligned_cols=228 Identities=28% Similarity=0.405 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 24587520022358503752667889999999987----40789838993124652238899998642775532898415
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVAT 223 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t 223 (438)
T Consensus 160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~ge------ViaST 233 (422)
T COG1158 160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGE------VVAST 233 (422)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCE------EEEEC
T ss_conf 266766526567884656866987873389999999986379964999999347806777788752406------98644
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCC
Q ss_conf 77880344444456777888864267988999709899999987665404778432366324554200444443113678
Q gi|254780684|r 224 SDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKE 303 (438)
Q Consensus 224 ~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~ 303 (438)
T Consensus 234 FDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsG-GvD~nAL~~PKrFF-GAARNIEe 311 (422)
T COG1158 234 FDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSG-GVDANALHRPKRFF-GAARNIEE 311 (422)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECC-CCCHHHHCCCHHHH-HHHHCCCC
T ss_conf 88860546899999999999888717868999656778998853667997774048-73856604835542-12205545
Q ss_pred CCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 8523554333421-676420278999861260898704277589713114456400022120899999999999999999
Q gi|254780684|r 304 KGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHR 382 (438)
Q Consensus 304 ~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~ 382 (438)
T Consensus 312 GGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w~lRr~l~~ 391 (422)
T COG1158 312 GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSP 391 (422)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 86341111124414775112025342577750788601344412453020356776157654899999999999997367
Q ss_pred H
Q ss_conf 9
Q gi|254780684|r 383 F 383 (438)
Q Consensus 383 y 383 (438)
T Consensus 392 m 392 (422)
T COG1158 392 M 392 (422)
T ss_pred C
T ss_conf 8