HHsearch alignment for GI: 254780684 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.96 E-value=0.005 Score=41.05 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 35850375266788999999998740789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i--------------------------------- 92 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI--------------------------------- 92 (436)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH---------------------------------
T ss_conf 99860577789998888999999876177669951523467999999---------------------------------
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 7788886426798899970989999998766
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHH
T ss_conf 9999998725883499872253337445655