HHsearch alignment for GI: 254780684 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.96  E-value=0.005  Score=41.05  Aligned_cols=78  Identities=24%  Similarity=0.325  Sum_probs=50.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             35850375266788999999998740789838993124652238899998642775532898415778803444444567
Q gi|254780684|r  159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA  238 (438)
Q Consensus       159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a  238 (438)
T Consensus        46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i---------------------------------   92 (436)
T COG2256          46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI---------------------------------   92 (436)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH---------------------------------
T ss_conf             99860577789998888999999876177669951523467999999---------------------------------


Q ss_pred             HHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             7788886426798899970989999998766
Q gi|254780684|r  239 VTIAEYFSSKGDNVLLILDSITRFAHSIREI  269 (438)
Q Consensus       239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei  269 (438)
T Consensus        93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~  123 (436)
T COG2256          93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDA  123 (436)
T ss_pred             HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHH
T ss_conf             9999998725883499872253337445655