HHsearch alignment for GI: 254780684 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=96.62 E-value=0.0038 Score=41.89 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHCC--------CCCEEEEEC-C-CCC
Q ss_conf 3330001331100111245875200223--585037526678899999999874078--------983899312-4-652
Q gi|254780684|r 132 VPPAMNRQRVEKGFKTGIRVIDIFTPLC--HGQRIGVFAGSGIGKSTLLSMFARSDC--------FDKVIISLV-G-ERG 199 (438)
Q Consensus 132 ~p~p~~R~~i~e~L~TGIr~ID~l~pig--~GQR~gIfg~~GvGKt~Ll~~i~~~~~--------~dv~V~alI-G-eR~ 199 (438)
T Consensus 72 a~el~~~r~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~p 151 (318)
T PRK04301 72 ALEVLERRKSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRP 151 (318)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCH
T ss_conf 99999986347824788878880547983367078886688787035667767653376777898863799956898697
Q ss_pred HHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHH
Q ss_conf 23889999864-2-7755328984157788034444445677788886426798-89997098999999
Q gi|254780684|r 200 REVREFIEDYL-G-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN-VLLILDSITRFAHS 265 (438)
Q Consensus 200 rev~efi~~~~-~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~-Vll~~Ds~tr~a~A 265 (438)
T Consensus 152 eRi~qia~~~g~d~~~~L~nI~v~r~~~-~-~~q~~~~---~~~~~~~-~~~~~v~LvVvDSi~alfR~ 214 (318)
T PRK04301 152 ERIEQMAEGLGLDPDEVLDNIHVARAYN-S-DHQMLLA---EKAEELI-KEGNNIKLVIVDSLTAHFRA 214 (318)
T ss_pred HHHHHHHHHHCCCHHHHHHCEEEEECCC-H-HHHHHHH---HHHHHHH-HHCCCCEEEEEECCHHHEEE
T ss_conf 9999999984999789864026861399-8-9999999---9999999-62788049999434232121