HHsearch alignment for GI: 254780684 and conserved domain: PRK04301

>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=96.62  E-value=0.0038  Score=41.89  Aligned_cols=128  Identities=17%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHCC--------CCCEEEEEC-C-CCC
Q ss_conf             3330001331100111245875200223--585037526678899999999874078--------983899312-4-652
Q gi|254780684|r  132 VPPAMNRQRVEKGFKTGIRVIDIFTPLC--HGQRIGVFAGSGIGKSTLLSMFARSDC--------FDKVIISLV-G-ERG  199 (438)
Q Consensus       132 ~p~p~~R~~i~e~L~TGIr~ID~l~pig--~GQR~gIfg~~GvGKt~Ll~~i~~~~~--------~dv~V~alI-G-eR~  199 (438)
T Consensus        72 a~el~~~r~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~p  151 (318)
T PRK04301         72 ALEVLERRKSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRP  151 (318)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCH
T ss_conf             99999986347824788878880547983367078886688787035667767653376777898863799956898697


Q ss_pred             HHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHH
Q ss_conf             23889999864-2-7755328984157788034444445677788886426798-89997098999999
Q gi|254780684|r  200 REVREFIEDYL-G-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN-VLLILDSITRFAHS  265 (438)
Q Consensus       200 rev~efi~~~~-~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~-Vll~~Ds~tr~a~A  265 (438)
T Consensus       152 eRi~qia~~~g~d~~~~L~nI~v~r~~~-~-~~q~~~~---~~~~~~~-~~~~~v~LvVvDSi~alfR~  214 (318)
T PRK04301        152 ERIEQMAEGLGLDPDEVLDNIHVARAYN-S-DHQMLLA---EKAEELI-KEGNNIKLVIVDSLTAHFRA  214 (318)
T ss_pred             HHHHHHHHHHCCCHHHHHHCEEEEECCC-H-HHHHHHH---HHHHHHH-HHCCCCEEEEEECCHHHEEE
T ss_conf             9999999984999789864026861399-8-9999999---9999999-62788049999434232121