HHsearch alignment for GI: 254780684 and conserved domain: PRK05688
>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=1000.03 Aligned_cols=432 Identities=37% Similarity=0.597 Sum_probs=403.5
Q ss_pred CCHHHHHHHHHHH----HHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC----CEEEEEEEECCCEEE
Q ss_conf 9236999999997----413342-1201289999525899982688887351899956996----079999974199799
Q gi|254780684|r 1 MQKNLETLAQLAE----DYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS----DNLGQVIRINLDIVY 71 (438)
Q Consensus 1 m~~~l~~l~~~~~----~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~----~v~geVi~~~~~~~~ 71 (438)
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~GrV~~v~G~~ie~~G~~--~~iG~~c~i~~~~~~~~~~v~aEVVgf~~~~v~ 78 (451)
T PRK05688 1 MRLERTSFAKRLEGYAEAISLPAQPVVEGRLLRMVGLTLEAEGLR--AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVY 78 (451)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECEEEEEEECC--CCCCCEEEEEECCCCCCCEEEEEEEEECCCEEE
T ss_conf 987789999999999972577677700369999967499998258--874784799868988775468999225499799
Q ss_pred EEECCCCCCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998048557467888997288-5552466688654307763047887775553012112543330001331100111245
Q gi|254780684|r 72 ICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIR 150 (438)
Q Consensus 72 l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr 150 (438)
T Consensus 79 l~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~-~~~~p~~~~~p~pl~R~~i~epl~TGIr 157 (451)
T PRK05688 79 LMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKA-EDWVPMDGPTINPLNRDPISEPLDVGIR 157 (451)
T ss_pred EEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCHHHCCCCCCCEECCCE
T ss_conf 998878778899999996899877775825358888877642689999898-7345566899883551787862003846
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHH
Q ss_conf 8752002235850375266788999999998740789838993124652238899998642-775532898415778803
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPI 229 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~ 229 (438)
T Consensus 158 aID~l~pigrGQR~gIfggsGvGKS~Ll~~i~r~~~adv~Vi~lIGERgrEv~efi~~~l~~~~~~~svvV~atsd~~p~ 237 (451)
T PRK05688 158 SINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPL 237 (451)
T ss_pred EEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 88454672467564210488986899999998852798699996127759999999998515674305898338889879
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEE
Q ss_conf 44444456777888864267988999709899999987665404778432366324554200444443113678852355
Q gi|254780684|r 230 LRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITA 309 (438)
Q Consensus 230 ~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~ 309 (438)
T Consensus 238 ~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~g~GSITa 317 (451)
T PRK05688 238 MRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITA 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999987655899998679825999705577788888899875899876687844887737888641379999922016
Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43334216764202789998612608987042775897131144564000221208999999999999999999999999
Q gi|254780684|r 310 VISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDI 389 (438)
Q Consensus 310 ~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l 389 (438)
T Consensus 318 l~tVlv~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~la~Y~e~~dL 397 (451)
T PRK05688 318 FYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDL 397 (451)
T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46775038876777334456550625998487886699998287526654233331299999999999999986888999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHH
Q ss_conf 985234469998999999999999998359988899976-8999998
Q gi|254780684|r 390 RLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITK 435 (438)
Q Consensus 390 ~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~ 435 (438)
T Consensus 398 i~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~ 444 (451)
T PRK05688 398 ISVGAYVAGGDPETDLAIARQPHLVQFLRQGLRENVSLAESREQLAA 444 (451)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99858456999999999986999999818999999599999999999