HHsearch alignment for GI: 254780684 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.27 E-value=2.1e-05 Score=58.43 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=100.8
Q ss_pred CCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHCCCC-
Q ss_conf 311001112458752002--235850375266788999999998740--789838993124652238899998642775-
Q gi|254780684|r 140 RVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDYLGDNL- 214 (438)
Q Consensus 140 ~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~~~~~l- 214 (438)
T Consensus 9 ~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~---~~~~~~~~g~d 85 (241)
T PRK06067 9 EEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKS---YLKQMESLKLD 85 (241)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHH---HHHHHHHCCCC
T ss_conf 314525668755786506997799089998079988799999999999867982999994289999---99999983998
Q ss_pred ------CCEEEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf ------53289841--5778803444444567778888642679889997098999999876654047784323663245
Q gi|254780684|r 215 ------KKSVVVVA--TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSV 286 (438)
Q Consensus 215 ------~~tvvv~~--t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~ 286 (438)
T Consensus 86 l~~~~~~G~L~i~~~~~~~~~~~~~-~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~~~------------~~ 151 (241)
T PRK06067 86 ISDFFIWGYLRIFPLNTEGFEWNSE-LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDDVL------------NF 151 (241)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHHHH------------HH
T ss_conf 5999866970578324111342155-68999999999999719989-9992801754138889999------------99
Q ss_pred HHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf 542004444431136788523554333421676420278999861260898704277589713114456
Q gi|254780684|r 287 FSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLA 355 (438)
Q Consensus 287 ~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~ 355 (438)
T Consensus 152 l~~l~~l~-------~~-g-~tvllt~~~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K 209 (241)
T PRK06067 152 FTECKNLC-------DN-G-KTILITLHP--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVK 209 (241)
T ss_pred HHHHHHHH-------HC-C-CEEEEEECC--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEE
T ss_conf 99999999-------68-9-889999056--76476643124899899999587843999999999999