HHsearch alignment for GI: 254780684 and conserved domain: PRK06067

>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.27  E-value=2.1e-05  Score=58.43  Aligned_cols=188  Identities=19%  Similarity=0.185  Sum_probs=100.8

Q ss_pred             CCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHCCCC-
Q ss_conf             311001112458752002--235850375266788999999998740--789838993124652238899998642775-
Q gi|254780684|r  140 RVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDYLGDNL-  214 (438)
Q Consensus       140 ~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~~~~~l-  214 (438)
T Consensus         9 ~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~---~~~~~~~~g~d   85 (241)
T PRK06067          9 EEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKS---YLKQMESLKLD   85 (241)
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHH---HHHHHHHCCCC
T ss_conf             314525668755786506997799089998079988799999999999867982999994289999---99999983998


Q ss_pred             ------CCEEEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             ------53289841--5778803444444567778888642679889997098999999876654047784323663245
Q gi|254780684|r  215 ------KKSVVVVA--TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSV  286 (438)
Q Consensus       215 ------~~tvvv~~--t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~  286 (438)
T Consensus        86 l~~~~~~G~L~i~~~~~~~~~~~~~-~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~~~------------~~  151 (241)
T PRK06067         86 ISDFFIWGYLRIFPLNTEGFEWNSE-LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDDVL------------NF  151 (241)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHHHH------------HH
T ss_conf             5999866970578324111342155-68999999999999719989-9992801754138889999------------99


Q ss_pred             HHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf             542004444431136788523554333421676420278999861260898704277589713114456
Q gi|254780684|r  287 FSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLA  355 (438)
Q Consensus       287 ~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~  355 (438)
T Consensus       152 l~~l~~l~-------~~-g-~tvllt~~~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K  209 (241)
T PRK06067        152 FTECKNLC-------DN-G-KTILITLHP--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVK  209 (241)
T ss_pred             HHHHHHHH-------HC-C-CEEEEEECC--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEE
T ss_conf             99999999-------68-9-889999056--76476643124899899999587843999999999999