HHsearch alignment for GI: 254780684 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=957.85 Aligned_cols=410 Identities=35% Similarity=0.520 Sum_probs=390.8
Q ss_pred HHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 4133421201289999525899982688887351899956996079999974199799998048557467888997288-
Q gi|254780684|r 14 DYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 14 ~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
T Consensus 13 ~~~~p~~~~~GrV~~V~g~~i~a~G~--~~~iGe~c~i~--~~~~~aeVvgf~~~~v~l~p~~~~~gi~~G~~V~~~g~~ 88 (432)
T PRK06793 13 FIETPFYTKVGKVHSVQEQFFVAKGP--KAKIGDVCFVG--EHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAED 88 (432)
T ss_pred CCCCCCCEEEEEEEEEECEEEEEEEC--CCCCCCEEEEC--CCCEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 13688744788999993519999937--98758989986--898189999985893999988787788999999979997
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
T Consensus 89 ~~vpVg~~lLGRViD~lG~PlD~~~~~~~~-~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGv 167 (432)
T PRK06793 89 VVIPRGNHLLGKVLSANGEVLNEEAENIPL-QKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGV 167 (432)
T ss_pred CEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCC
T ss_conf 578889563287757896615899988877-4344328998830137778740048731000156124626666326898
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998740789838993124652238899998642-7755328984157788034444445677788886426798
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN 251 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~ 251 (438)
T Consensus 168 GKstLl~~i~~~~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~ 247 (432)
T PRK06793 168 GKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNN 247 (432)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999987245786579998886279999999986446752127887258899899998875512378899866996
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
T Consensus 248 VLli~DslTr~A~A~REisl~~gepP~-~Gy~p~~~s~l~~LlERag~~~--~GSITa~~tVl~~gdD~~~pI~d~~~si 324 (432)
T PRK06793 248 VLLMMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQ--KGSITGIYTVLVDGDDLNGPVPDLARGI 324 (432)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 899945678888887477885379998-9888645878999997540368--8635788899832886678715767766
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHH
Q ss_conf 260898704277589713114456400022120899999999999999999999999998523446999-8999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD-LILDKAVHQV 410 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d-~~~d~~i~~~ 410 (438)
T Consensus 325 lDGhIvLsr~La~~g~yPAIDvl~SvSRv~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~Y~~g~d~~~~d~a~~~~ 404 (432)
T PRK06793 325 LDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKV 404 (432)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 25379996758866999972885154226254503999999999999999999999999847976699858899999868
Q ss_pred HHHHHHHCCCCCCCCCHHHHH
Q ss_conf 999998359988899976899
Q gi|254780684|r 411 PIIYDFLKQSPSDLSSEDVFQ 431 (438)
Q Consensus 411 ~~i~~fl~Q~~~e~~~~~~~~ 431 (438)
T Consensus 405 ~~i~~fL~Q~~~e~~~~~~~~ 425 (432)
T PRK06793 405 EGINTFLKQGRSDSFQFDDIV 425 (432)
T ss_pred HHHHHHHCCCCCCCCCHHHHH
T ss_conf 999998289988997999999