HHsearch alignment for GI: 254780684 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=993.86 Aligned_cols=427 Identities=38% Similarity=0.597 Sum_probs=400.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC--CEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 69999999974133421201289999525899982688887351899956996--0799999741997999980485574
Q gi|254780684|r 4 NLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS--DNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~--~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
T Consensus 7 ~~~~l~~~~~~~~--~~~~~Grv~~v~G~~iea~~~--~~~iG~~c~i~~~~~~~~~~aEVVgf~~~~~~l~p~~~~~Gi 82 (439)
T PRK06936 7 IPHHLRHAIVGSR--LIQIRGRVTQVTGTILKAVVP--GVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGI 82 (439)
T ss_pred HHHHHHHHHHCCC--EEEEEEEEEEEEEEEEEEEEC--CCCCCCEEEEECCCCCCEEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 8999999982698--577887999999658999847--999788689982899834899999883898999967786678
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
T Consensus 83 ~~G~~V~~~g~~~~vpvG~~lLGRV~D~~G~PlDg~~~~~~-~~~~pi~~~~p~p~~R~~i~epl~TGIraID~llt~g~ 161 (439)
T PRK06936 83 SSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEP-AAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGE 161 (439)
T ss_pred CCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHC
T ss_conf 99999997899867775704228888888875589999987-87620458897842026878742268555524686310
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 850375266788999999998740789838993124652238899998642-7755328984157788034444445677
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
T Consensus 162 GQR~gIfagsGvGKs~Ll~~i~r~~~adv~V~alIGERgrEv~efie~~l~~~gl~rsvvV~atsd~p~~~R~~aa~~a~ 241 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 57010236999988999999976432695799980730899999999864125431069996189899899999998877
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78888642679889997098999999876654047784323663245542004444431136788523554333421676
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd 319 (438)
T Consensus 242 aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~ERag~--~~~GSITa~~tVl~~gdD 319 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ--SDKGSITALYTVLVEGDD 319 (439)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCEEEEEEEEECCCC
T ss_conf 889999858984899935678999999899986689998767795099887888872558--999745765445504887
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42027899986126089870427758971311445640002212089999999999999999999999999852344699
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
T Consensus 320 ~~dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~y~~G~ 399 (439)
T PRK06936 320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQ 399 (439)
T ss_pred CCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77771565666626069984878866999981874045444521226999999999999999899999999854865799
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 98999999999999998359988899976-899999870
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
T Consensus 400 d~~~D~ai~~~~~i~~FL~Q~~~e~~~~~et~~~L~~l~ 438 (439)
T PRK06936 400 DKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETLT 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 988999998689999980899999849999999999974