HHsearch alignment for GI: 254780684 and conserved domain: PRK07196
>PRK07196 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=976.93 Aligned_cols=427 Identities=36% Similarity=0.582 Sum_probs=401.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 699999999741334212012899995258999826888873518999569-9607999997419979999804855746
Q gi|254780684|r 4 NLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEIS 82 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~ 82 (438)
T Consensus 1 ~l~~~~~~~~~~--~~~r~~GrV~~i~G~~ie~~g~~--~~iG~~c~I~~~~g~~v~aEVVgf~~~~~~L~p~~~~~Gi~ 76 (434)
T PRK07196 1 ALDHALKSIENI--HLARVAGRLVRVTGLLLESVGCR--LAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVL 76 (434)
T ss_pred CHHHHHHHHHCC--CCCEEEEEEEEEECCEEEEECCC--CCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 958999997559--86248889999971089998069--89899899980899888999999819969999888877889
Q ss_pred CCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7888997288-555246668865430776304788777555301211254333000133110011124587520022358
Q gi|254780684|r 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG 161 (438)
Q Consensus 83 ~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G 161 (438)
T Consensus 77 ~G~~V~~~g~~~~v~vg~~lLGRVvD~~G~PlDg~g~~~~-~~~~~~~~~~~nPl~R~~i~e~l~TGIraID~l~pigrG 155 (434)
T PRK07196 77 GGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGG-STPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKG 155 (434)
T ss_pred CCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 9999998899876776862247577678862689988888-846556689998301378887212686244155770245
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 50375266788999999998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
T Consensus 156 QRigIfggsGvGKs~Ll~~I~r~~~advvVi~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~p~~r~~a~~~a~a 235 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHA 235 (434)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 24210147899789999999897379989997422234999999998742467432699984588987888899988998
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
T Consensus 236 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~ERaG~~~-~~GSITa~~tv~~~~dD~ 314 (434)
T PRK07196 236 IATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS-GNGTMTAIYTVLAEGDDQ 314 (434)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEEEEEEECCCCCC
T ss_conf 9999986798569995474688999999997568999867758438888589998521578-862488888886268887
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
T Consensus 315 ~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~~i~~~~~~~~a~~~r~~la~y~e~e~li~~G~Y~~G~d 394 (434)
T PRK07196 315 QDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGAD 394 (434)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88706665755075499847688669999738862642255101669999999999999999999999998528557999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHH
Q ss_conf 8999999999999998359988899976-89999987
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKK 436 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~ 436 (438)
T Consensus 395 ~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~s~~~l~~l 431 (434)
T PRK07196 395 PMADQAVHYYPAITQFLRQEVGHPALFSASVEQLTGM 431 (434)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 8999999858999998289999994999999999987