HHsearch alignment for GI: 254780684 and conserved domain: PRK07721
>PRK07721 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=982.00 Aligned_cols=416 Identities=38% Similarity=0.625 Sum_probs=395.0
Q ss_pred CCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC---CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 34212012899995258999826888873518999569---96079999974199799998048557467888997288-
Q gi|254780684|r 17 KNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK---NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 17 ~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~---~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
T Consensus 11 ~~~~~~~GrV~~I~G~lIea~g~--~~~iGelc~I~~~~~~g~~i~aEVVgf~~~~v~l~p~~~~~GI~~G~~V~~~g~~ 88 (435)
T PRK07721 11 LDPYKRYGKVKRVIGLMIESKGP--ESSIGDVCYIHTKGKGGKKIKAEVVGFKDENILLMPYLEAANIAPGSLVEATGEP 88 (435)
T ss_pred CCCCCCCEEEEEEECEEEEEEEC--CCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 79752312899998638999957--8884341799964799978999999876988999987688899999999958997
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
T Consensus 89 ~~vpvg~~lLGRV~d~lG~PiDg~~~~~-~~~~~~i~~~~pnp~~R~~i~e~l~TGIraID~l~tigkGQRigIf~gsGv 167 (435)
T PRK07721 89 LRVKVGSGLIGQVVDAFGEPLDGSALPK-GLAPVSTDQSPPNPMKRPPIREKMEVGVRAIDSLLTVGKGQRVGIFAGSGV 167 (435)
T ss_pred CEEECCHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCC
T ss_conf 6677275322451045654358988888-765352558997850147988630378565226476035754100268998
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998740789838993124652238899998642-7755328984157788034444445677788886426798
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN 251 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~ 251 (438)
T Consensus 168 GKs~Ll~~iar~~~adv~V~~liGeR~rEv~efie~~l~~~~l~rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~ 247 (435)
T PRK07721 168 GKSTLMGMIARQTSADLNVIALIGERGREVREFIERDLGEEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQN 247 (435)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999988744882589993320289999999752215553239999438899999999999988899999967997
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
T Consensus 248 VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~--~~~GSIT~i~~V~~~gdD~~dPi~d~~~~i 325 (435)
T PRK07721 248 VMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT--NESGTITAFYTVLVDGDDMNEPIADTVRGI 325 (435)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 899516388999999999985489998667784599887888885137--999745777545047986667716878777
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 26089870427758971311445640002212089999999999999999999999999852344699989999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVP 411 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~ 411 (438)
T Consensus 326 lDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~D~ai~~~~ 405 (435)
T PRK07721 326 LDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYP 405 (435)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 16179986889866999980886166543222302999999999999999889999999974876799988999998689
Q ss_pred HHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 99998359988899976-899999870
Q gi|254780684|r 412 IIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 412 ~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
T Consensus 406 ~i~~fL~Q~~~e~~~~~~~~~~l~~l~ 432 (435)
T PRK07721 406 QLISFLKQEVDEKATLEESIQALKQLT 432 (435)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999984899999989999999999986