HHsearch alignment for GI: 254780684 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=994.43 Aligned_cols=429 Identities=41% Similarity=0.673 Sum_probs=404.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 9999999741334212012899995258999826888873518999569-960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
T Consensus 3 ~~~~~~~~~--~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~~~~~~l~~~~~t~Gi~~G 80 (441)
T PRK08927 3 KALAAQIGD--IDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFRGDRALLMPFGPLEGVRRG 80 (441)
T ss_pred HHHHHHHHC--CCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 899999844--897157789999977089998057777758889999089988999999885987999988887788999
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
T Consensus 81 ~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQR 160 (441)
T PRK08927 81 CRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQR 160 (441)
T ss_pred CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 99998999987777866428787767111589998888760040247896846617777631036015653300203646
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652238899998642-7755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
T Consensus 161 igIfagsGvGKs~Ll~~i~r~~~adv~VialIGeRgrEv~efi~~~l~~~~l~rsvvV~atsd~p~~~R~~a~~~A~aiA 240 (441)
T PRK08927 161 LGIFAGSGVGKSVLLSMLARNTDADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIA 240 (441)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 66316899987899999986416773787522651899999999872024522458999637898788799998755899
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 88642679889997098999999876654047784323663245542004444431136788523554333421676420
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHND 322 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~ 322 (438)
T Consensus 241 Eyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~-~~GSIT~~~tVl~~gdD~~d 319 (441)
T PRK08927 241 EYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGL-GEGTITGLFTVLVDGDDHNE 319 (441)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEECEEEEEECCCCCCC
T ss_conf 99997799679983460288899999997558999877878617877178887613578-99503030357612787678
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 27899986126089870427758971311445640002212089999999999999999999999999852344699989
Q gi|254780684|r 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI 402 (438)
Q Consensus 323 pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~ 402 (438)
T Consensus 320 Pi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~~g~d~~ 399 (441)
T PRK08927 320 PVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLVRRARQLMATYADMEELIRLGAYRAGSDPE 399 (441)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 72454465636479996879866999980876256442400027999999999999999888999999973864799989
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 99999999999998359988899976-899999870
Q gi|254780684|r 403 LDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 403 ~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
T Consensus 400 ~D~ai~~~~~i~~fL~Q~~~e~~~~~e~~~~L~~~~ 435 (441)
T PRK08927 400 VDEAIRLHPPLEAFLRQGKDEATSLAEGYAQLAQIL 435 (441)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998679999984899889989999999999986