HHsearch alignment for GI: 254780684 and conserved domain: PRK08927

>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=994.43  Aligned_cols=429  Identities=41%  Similarity=0.673  Sum_probs=404.6

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf             9999999741334212012899995258999826888873518999569-960799999741997999980485574678
Q gi|254780684|r    6 ETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLG   84 (438)
Q Consensus         6 ~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G   84 (438)
T Consensus         3 ~~~~~~~~~--~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~~~~~~l~~~~~t~Gi~~G   80 (441)
T PRK08927          3 KALAAQIGD--IDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFRGDRALLMPFGPLEGVRRG   80 (441)
T ss_pred             HHHHHHHHC--CCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf             899999844--897157789999977089998057777758889999089988999999885987999988887788999


Q ss_pred             CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r   85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR  163 (438)
Q Consensus        85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR  163 (438)
T Consensus        81 ~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQR  160 (441)
T PRK08927         81 CRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQR  160 (441)
T ss_pred             CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             99998999987777866428787767111589998888760040247896846617777631036015653300203646


Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             375266788999999998740789838993124652238899998642-7755328984157788034444445677788
Q gi|254780684|r  164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIA  242 (438)
Q Consensus       164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA  242 (438)
T Consensus       161 igIfagsGvGKs~Ll~~i~r~~~adv~VialIGeRgrEv~efi~~~l~~~~l~rsvvV~atsd~p~~~R~~a~~~A~aiA  240 (441)
T PRK08927        161 LGIFAGSGVGKSVLLSMLARNTDADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIA  240 (441)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             66316899987899999986416773787522651899999999872024522458999637898788799998755899


Q ss_pred             HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf             88642679889997098999999876654047784323663245542004444431136788523554333421676420
Q gi|254780684|r  243 EYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHND  322 (438)
Q Consensus       243 Eyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~  322 (438)
T Consensus       241 Eyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~-~~GSIT~~~tVl~~gdD~~d  319 (441)
T PRK08927        241 EYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGL-GEGTITGLFTVLVDGDDHNE  319 (441)
T ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEECEEEEEECCCCCCC
T ss_conf             99997799679983460288899999997558999877878617877178887613578-99503030357612787678


Q ss_pred             HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             27899986126089870427758971311445640002212089999999999999999999999999852344699989
Q gi|254780684|r  323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI  402 (438)
Q Consensus       323 pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~  402 (438)
T Consensus       320 Pi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~~g~d~~  399 (441)
T PRK08927        320 PVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLVRRARQLMATYADMEELIRLGAYRAGSDPE  399 (441)
T ss_pred             CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             72454465636479996879866999980876256442400027999999999999999888999999973864799989


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf             99999999999998359988899976-899999870
Q gi|254780684|r  403 LDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL  437 (438)
Q Consensus       403 ~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l  437 (438)
T Consensus       400 ~D~ai~~~~~i~~fL~Q~~~e~~~~~e~~~~L~~~~  435 (441)
T PRK08927        400 VDEAIRLHPPLEAFLRQGKDEATSLAEGYAQLAQIL  435 (441)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999998679999984899889989999999999986