HHsearch alignment for GI: 254780684 and conserved domain: PRK08972
>PRK08972 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=998.19 Aligned_cols=421 Identities=36% Similarity=0.587 Sum_probs=401.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999999741334212012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 5 LETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 5 l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
T Consensus 6 ~~~~~~~~~~~~~~~~~~sGrv~~v~G~~ie~~g~~--~~iG~~c~i~~~~g~~~aEVvgf~~~~~~l~p~~~~~Gi~~G 83 (440)
T PRK08972 6 LNRLKQYQQKVPPFRAVASGQLVRVVGLTLEATGCR--APVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPG 83 (440)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEECC--CCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 999999975267789866048999982589998168--987887899849982899999982997999988888888999
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
T Consensus 84 ~~V~~tg~~~~VpVG~~lLGRVvD~lG~PiDg~g~~~~~-~~~~i~~~~~~pl~R~~i~epl~TGIkaID~l~pigrGQR 162 (440)
T PRK08972 84 ARVTPLGEQSGLPVGMSLLGRVLDGNGNPLDGLGPIYTD-QRAPRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQR 162 (440)
T ss_pred CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
T ss_conf 999978998678848131188757886635899999998-5213137997821037778610158345634367124646
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652238899998642-7755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
T Consensus 163 igIf~gsGvGKS~Ll~~i~r~~~advvVi~lIGERgrEv~efie~~l~~~~~~rsvvV~atsd~~p~~R~~a~~~A~tiA 242 (440)
T PRK08972 163 MGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATRIA 242 (440)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECEEHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 66315789758999988875147878999862313699999999985047744789997048888688999999999889
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 88642679889997098999999876654047784323663245542004444431136788523554333421676420
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHND 322 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~ 322 (438)
T Consensus 243 EyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~~~GSITa~~tVlv~gdD~~d 322 (440)
T PRK08972 243 EYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQD 322 (440)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
T ss_conf 99996799779996355677788878998748998766776427777368887522689997658885666315886678
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 27899986126089870427758971311445640002212089999999999999999999999999852344699989
Q gi|254780684|r 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI 402 (438)
Q Consensus 323 pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~ 402 (438)
T Consensus 323 Pi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~ 402 (440)
T PRK08972 323 PIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYAQGSDPR 402 (440)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 72454465535079984879866999875875066552741068999999999999999888899999975966899989
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999999999998359988899976
Q gi|254780684|r 403 LDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 403 ~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
T Consensus 403 ~D~ai~~~~~i~~fL~Q~~~e~~~~~ 428 (440)
T PRK08972 403 IDNAIRLQPAMNAFLQQTMKEAVPYD 428 (440)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999868999998389999997999