HHsearch alignment for GI: 254780684 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=90.04 E-value=0.5 Score=26.47 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCCEEEEECCCCCHHHHHHHHHH---HCCCCCCEEEEEEC
Q ss_conf 8752002-23585037526678899999999874---07898389931246522388999986---42775532898415
Q gi|254780684|r 151 VIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFAR---SDCFDKVIISLVGERGREVREFIEDY---LGDNLKKSVVVVAT 223 (438)
Q Consensus 151 ~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~---~~~~dv~V~alIGeR~rev~efi~~~---~~~~l~~tvvv~~t 223 (438)
T Consensus 38 ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~ 117 (325)
T PRK09435 38 LLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPS 117 (325)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99986301798259974279998688999999999996798589999789999888610103888876147998488406
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7788-034444445677788886426798899970
Q gi|254780684|r 224 SDES-PILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 224 ~d~~-~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
T Consensus 118 ~srg~lgg~~~~~~~~~~~~~---a~g~d~i~iET 149 (325)
T PRK09435 118 PSSGTLGGVARKTRETMLLCE---AAGFDVILVET 149 (325)
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HCCCCEEEEEE
T ss_conf 778886773354999999999---77999899970