HHsearch alignment for GI: 254780684 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.37 E-value=0.0022 Score=43.68 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=57.2
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 00223585037526678899999999874078983899312465223889999864277553289841577880344444
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
T Consensus 46 ~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~-------------------------- 99 (726)
T PRK13341 46 AIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDA-------------------------- 99 (726)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH--------------------------
T ss_conf 997699982788897999999999999887488679985620377999999999--------------------------
Q ss_pred HHHHHHHHHH-HHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 4567778888-6426798899970989999998766
Q gi|254780684|r 235 PLTAVTIAEY-FSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 235 ~~~a~~iAEy-fr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
T Consensus 100 -------A~~~~~~~g~~tILFIDEIHRfNK~QQD~ 128 (726)
T PRK13341 100 -------AKERLERHGKRTILFIDEVHRFNKAQQDA 128 (726)
T ss_pred -------HHHHHHHCCCCEEEEEECHHHCCHHHHHH
T ss_conf -------99998745996599986254258878998