HHsearch alignment for GI: 254780684 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=97.06 E-value=0.0036 Score=42.07 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=52.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
Q ss_conf 87520022358503752667889999999987407898389931246522388999986427755328984157788034
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPIL 230 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~ 230 (438)
T Consensus 27 ~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~---------------------- 84 (417)
T PRK13342 27 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEE---------------------- 84 (417)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----------------------
T ss_conf 9999997699975998896999899999999998689889961410388999999999----------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 444445677788886426798899970989999998766
Q gi|254780684|r 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
T Consensus 85 -----------a~~~-~~~~~tilfiDEIHRfnK~QQD~ 111 (417)
T PRK13342 85 -----------AKQS-RLGRRTILFIDEIHRFNKAQQDA 111 (417)
T ss_pred -----------HHHH-HCCCCEEEEEECHHHCCHHHHHH
T ss_conf -----------8863-14896599997820058899999