HHsearch alignment for GI: 254780684 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=97.06  E-value=0.0036  Score=42.07  Aligned_cols=85  Identities=22%  Similarity=0.312  Sum_probs=52.1

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
Q ss_conf             87520022358503752667889999999987407898389931246522388999986427755328984157788034
Q gi|254780684|r  151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPIL  230 (438)
Q Consensus       151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~  230 (438)
T Consensus        27 ~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~----------------------   84 (417)
T PRK13342         27 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEE----------------------   84 (417)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----------------------
T ss_conf             9999997699975998896999899999999998689889961410388999999999----------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             444445677788886426798899970989999998766
Q gi|254780684|r  231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREI  269 (438)
Q Consensus       231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei  269 (438)
T Consensus        85 -----------a~~~-~~~~~tilfiDEIHRfnK~QQD~  111 (417)
T PRK13342         85 -----------AKQS-RLGRRTILFIDEIHRFNKAQQDA  111 (417)
T ss_pred             -----------HHHH-HCCCCEEEEEECHHHCCHHHHHH
T ss_conf             -----------8863-14896599997820058899999