HHsearch alignment for GI: 254780684 and conserved domain: TIGR01242
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=93.36 E-value=0.11 Score=31.20 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=34.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 585037526678899999999874078983899312465223889999864277
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN 213 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~ 213 (438)
T Consensus 157 KG--vLLyGPPGtGKTLlAKAvA~et~ATFIrvV--------gSElV~KyIGEG 200 (364)
T TIGR01242 157 KG--VLLYGPPGTGKTLLAKAVAHETNATFIRVV--------GSELVRKYIGEG 200 (364)
T ss_pred CC--EEEECCCCCCHHHHHHHHHCCCCCEEEEEE--------HHHHHHHHHCCH
T ss_conf 86--570075797688999986314551268860--------444444441331