HHsearch alignment for GI: 254780684 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.19 E-value=0.056 Score=33.40 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=26.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
T Consensus 483 nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QR 513 (703)
T TIGR01846 483 NLSLDIKPGEVIGIVGPSGSGKSTLTKLLQR 513 (703)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 2687657865799872789867899999886